NO06G03610.1, NO06G03610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03610.1
Unique NameNO06G03610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2022
Alignment locationchr6:991225..993503 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:991225..993503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G03610.1 vs.
Match: EWM26387.1 (polyadenylate-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 189.1 bits (479), Expect = 1.800e-44
Identity = 100/154 (64.94%), Postives = 117/154 (75.97%), Query Frame = 0 
Query:   43 MKRGRIEEPVVSVGGTKATPAAPDLADDPLAGRASPTLFVGSLAKSVQEKDVLTLFLPFGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKALNDVRLHGRAIAVRYQRDADEGGNGARSMVFKARAKSIQQ--GGRRDGRGVGGEG 195
            MKR R E      G         D A+DPLAGR  P LF+GSLAKSVQEKDVL LFLP+GK+VDIAFFWHMHGPRKGEPKG+CF+T+A TE+AT+AI+AL+  RLHGR+IAVRYQRDAD+    AR+++ KARAKS+QQ  GG R GR   GEG
Sbjct:    1 MKRRREE------GAGARNAGKDDPAEDPLAGRPGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRDADDMNMDARTLLSKARAKSLQQSGGGGRGGRATEGEG 148
The following BLAST results are available for this feature:
BLAST of NO06G03610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26387.11.800e-4464.94polyadenylate-binding protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03610NO06G03610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03610.1NO06G03610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03610.1.cds1NO06G03610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03610.1.cds2NO06G03610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03610.1 ID=NO06G03610.1|Name=NO06G03610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2022bp
TAATCAAACAGACTTGTGTTTTTACTCCTTCCCCTCCCCCCTTTTAACCA
CTTTTCCTCTTCCTCTTCATAAACATCATCTATATATATCCCCCTTCTTC
GTGTTGAACGGGGTGGCCATGCTATTCACCATCCGCACACTCCTCGAGAT
CACCGTACCCGTCGGGTTGACACTCAACCCCCTCGCGGTTTGCCTCAATC
TTGTACTCATCTCATCCAACTCCTCCCTCTCATCCTCGGGGAAAACCATA
CGTTTCTCCGTTGCGGCTTTGAATAAATCTTCAATCGAAGGCTTAGCCCA
CGAGTGGAAGTTATGCCGAAGGGCTGTGGCGAGACAAGCGAGAATGGCTC
TCCTTCGTTCCTTATCTGCGTAAGTCTCTTGTTCGTCGTCTATCGCTTGC
AACGCAACAATGTACTCCTTGATATTCCGCGCCGCGCGGCGGAACTCAAA
GGTATCATCCGTCAACATCTCCGACCGCAGTAATCCTAGCAAAATCCATG
TTGCTGCGCGATATTGTTCTTCCGGACCAAAAAGGAGGATGTGCTCCTTA
ACCAACGACAAGAGCTGGACAGCCTGCGCCCTGTCCTCGGCTGCGGGCCC
TAGTAACCGGTCCCACGTGCCATCGACCGCCATAAAAAATGCGATGGTCG
CATGAAATTGTGCAGCGTTTTCTGCATTGATATTTCCTGTCATTAACTTG
GTCAGCAAGCCCAGTGCCTTCCGACTCTTTTCCAGCTTGGTCGAGGTCAA
AGCGCGTGTGATTTTATCAAGGGCTTCTTCGAGGTCTAACGTGGCCGGCT
TGATGGCAGCGGCTGTCGTTTTGCCATTGTCATCCTGGTTCTCTTGTCGT
GCACGTTTCTTGGTGCTGGTAGGGCTACCGTCCTTTTCTTGCGGCTTCTT
CTGATCTTTGTCGGTGTGGGGGGGAGCGGGTCGCTTCTGCTGCCGTTGTG
TCTCGTTCGTGATATTAAGCTCCTCCTTCTTGGCCGCTGCCGGCAGGTCA
CCAAAGAGACCATCAAAAGGATCCGCCATTACTGTGGCTGTGGCTGTAGT
TGTCTGTGTGTAGCCGGTAAATCTGTCTGTTAGCACAAATGTGATGTATG
GAGAAGCTCCACGCCCCAACACTTTCCCCGTCTCGCCGCAATCATCATAC
CACCGCTAATCCTTTACCATGCGGCCCCACACCCCCCGTATCACCTCCCT
ACAGATCTCATCCAAGTACACTGATGAAGCGGGGCCGAATAGAAGAGCCA
GTGGTCAGTGTTGGTGGAACAAAAGCTACGCCCGCGGCGCCCGACCTCGC
CGATGACCCCCTCGCAGGGCGTGCCAGCCCCACGCTCTTTGTTGGTTCCC
TTGCCAAAAGCGTGCAGGAGAAAGATGTCCTTACGCTCTTTCTCCCCTTC
GGGAAAATCGTGGACATAGCGTTCTTTTGGCACATGCATGGCCCGCGGAA
AGGTGAGCCCAAAGGTTATTGTTTTCTCACGTTTGCGCACACAGAGGATG
CCACTGCAGCAATTAAGGCATTGAACGACGTTCGCTTGCACGGTCGAGCG
ATAGCAGTACGGTATCAGAGAGATGCGGATGAAGGAGGGAATGGCGCAAG
GTCGATGGTGTTTAAAGCACGAGCCAAAAGCATTCAGCAAGGCGGAAGAA
GAGATGGACGAGGAGTTGGTGGGGAGGGTAAGGACAACAGAACAGAAGGA
TCAAGAGCAGCGGCAGCAGGCGTGGCCTCGGTCGCGTTACCAAAACGGTC
AAAATTAGCGTCAACAGCAGCAGCTGAGAGGGGAGGAAACGGGGGAAGGG
AGGGAGAGGAGGAAGAATCGGCATTGGAAGCCAAGATTCGCATGCTAAGA
TTCCAGATTGCGGCAAGCAGTGGGGGTGGAGGTGGAGGACGGGGGTGAGA
GATTAATCTGTAAGTCGCATTTCGCAAAGACTTGTGAGTATTACAGACAA
CTGTGCGCTTGTTCTAAAAATCAGGGGGAGGAGAAACTTTAAAAAAACAA
AAGTAAGGGTGGCAAAAGCGGG
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protein sequence of NO06G03610.1

>NO06G03610.1-protein ID=NO06G03610.1-protein|Name=NO06G03610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MEKLHAPTLSPSRRNHHTTANPLPCGPTPPVSPPYRSHPSTLMKRGRIEE
PVVSVGGTKATPAAPDLADDPLAGRASPTLFVGSLAKSVQEKDVLTLFLP
FGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKALNDVRLHGR
AIAVRYQRDADEGGNGARSMVFKARAKSIQQGGRRDGRGVGGEGKDNRTE
GSRAAAAGVASVALPKRSKLASTAAAERGGNGGREGEEEESALEAKIRML
RFQIAASSGGGGGGRG*
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mRNA from alignment at chr6:991225..993503+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03610.1 ID=NO06G03610.1|Name=NO06G03610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2279bp|location=Sequence derived from alignment at chr6:991225..993503+ (Nannochloropsis oceanica)
TAATCAAACAGACTTGTGTTTTTACTCCTTCCCCTCCCCCCTTTTAACCA
CTTTTCCTCTTCCTCTTCATAAACATCATCTATATATATCCCCCTTCTTC
GTGTTGAACGGGGTGGCCATGCTATTCACCATCCGCACACTCCTCGAGAT
CACCGTACCCGTCGGGTTGACACTCAACCCCCTCGCGGTTTGCCTCAATC
TTGTACTCATCTCATCCAACTCCTCCCTCTCATCCTCGGGGAAAACCATA
CGTTTCTCCGTTGCGGCTTTGAATAAATCTTCAATCGAAGGCTTAGCCCA
CGAGTGGAAGTTATGCCGAAGGGCTGTGGCGAGACAAGCGAGAATGGCTC
TCCTTCGTTCCTTATCTGCGTAAGTCTCTTGTTCGTCGTCTATCGCTTGC
AACGCAACAATGTACTCCTTGATATTCCGCGCCGCGCGGCGGAACTCAAA
GGTATCATCCGTCAACATCTCCGACCGCAGTAATCCTAGCAAAATCCATG
TTGCTGCGCGATATTGTTCTTCCGGACCAAAAAGGAGGATGTGCTCCTTA
ACCAACGACAAGAGCTGGACAGCCTGCGCCCTGTCCTCGGCTGCGGGCCC
TAGTAACCGGTCCCACGTGCCATCGACCGCCATAAAAAATGCGATGGTCG
CATGAAATTGTGCAGCGTTTTCTGCATTGATATTTCCTGTCATTAACTTG
GTCAGCAAGCCCAGTGCCTTCCGACTCTTTTCCAGCTTGGTCGAGGTCAA
AGCGCGTGTGATTTTATCAAGGGCTTCTTCGAGGTCTAACGTGGCCGGCT
TGATGGCAGCGGCTGTCGTTTTGCCATTGTCATCCTGGTTCTCTTGTCGT
GCACGTTTCTTGGTGCTGGTAGGGCTACCGTCCTTTTCTTGCGGCTTCTT
CTGATCTTTGTCGGTGTGGGGGGGAGCGGGTCGCTTCTGCTGCCGTTGTG
TCTCGTTCGTGATATTAAGCTCCTCCTTCTTGGCCGCTGCCGGCAGGTCA
CCAAAGAGACCATCAAAAGGATCCGCCATTACTGTGGCTGTGGCTGTAGT
TGTCTGTGTGTAGCCGGTAAATCTGTCTGTTAGCACAAATGTGATGTATG
GAGAAGCTCCACGCCCCAACACTTTCCCCGTCTCGCCGCAATCATCATAC
CACCGCTAATCCTTTACCATGCGGCCCCACACCCCCCGTATCACCTCCCT
ACAGATCTCATCCAAGTACACTGATGAAGCGGGGCCGAATAGAAGAGCCA
GTGGTCAGTGTTGGTGGAACAAAAGGTAAGCGGGGACATGAATTGAAGGG
TGGGGCTGTACTGTCATGTGTTCTTTGACGGCATGGTAGAAAGGGGATGG
CAACAAAACGTGAGCCGTTGGCTGGTTGGCTGGAGGCACACATCATTGCA
GTATTGTCTGTTTGGGAGCTGCGGCACGTGGATGAGTTGGCCACGTGAAA
TGTAGTGTGTGTTCGTTGTCCTTCCGCCTCTCTCCCCGACCAAGCCACAG
CACACACCACACCGTCCTCCCACACCAAACAGCTACGCCCGCGGCGCCCG
ACCTCGCCGATGACCCCCTCGCAGGGCGTGCCAGCCCCACGCTCTTTGTT
GGTTCCCTTGCCAAAAGCGTGCAGGAGAAAGATGTCCTTACGCTCTTTCT
CCCCTTCGGGAAAATCGTGGACATAGCGTTCTTTTGGCACATGCATGGCC
CGCGGAAAGGTGAGCCCAAAGGTTATTGTTTTCTCACGTTTGCGCACACA
GAGGATGCCACTGCAGCAATTAAGGCATTGAACGACGTTCGCTTGCACGG
TCGAGCGATAGCAGTACGGTATCAGAGAGATGCGGATGAAGGAGGGAATG
GCGCAAGGTCGATGGTGTTTAAAGCACGAGCCAAAAGCATTCAGCAAGGC
GGAAGAAGAGATGGACGAGGAGTTGGTGGGGAGGGTAAGGACAACAGAAC
AGAAGGATCAAGAGCAGCGGCAGCAGGCGTGGCCTCGGTCGCGTTACCAA
AACGGTCAAAATTAGCGTCAACAGCAGCAGCTGAGAGGGGAGGAAACGGG
GGAAGGGAGGGAGAGGAGGAAGAATCGGCATTGGAAGCCAAGATTCGCAT
GCTAAGATTCCAGATTGCGGCAAGCAGTGGGGGTGGAGGTGGAGGACGGG
GGTGAGAGATTAATCTGTAAGTCGCATTTCGCAAAGACTTGTGAGTATTA
CAGACAACTGTGCGCTTGTTCTAAAAATCAGGGGGAGGAGAAACTTTAAA
AAAACAAAAGTAAGGGTGGCAAAAGCGGG
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Coding sequence (CDS) from alignment at chr6:991225..993503+

>NO06G03610.1 ID=NO06G03610.1|Name=NO06G03610.1|organism=Nannochloropsis oceanica|type=CDS|length=801bp|location=Sequence derived from alignment at chr6:991225..993503+ (Nannochloropsis oceanica)
ATGGAGAAGCTCCACGCCCCAACACTTTCCCCGTCTCGCCGCAATCATCA
TACCACCGCTAATCCTTTACCATGCGGCCCCACACCCCCCGTATCACCTC
CCTACAGATCTCATCCAAGTACACTGATGAAGCGGGGCCGAATAGAAGAG
CCAGTGGTCAGTGTTGGTGGAACAAAAGCTACGCCCGCGGCGCCCGACCT
CGCCGATGACCCCCTCGCAGGGCGTGCCAGCCCCACGCTCTTTGTTGGTT
CCCTTGCCAAAAGCGTGCAGGAGAAAGATGTCCTTACGCTCTTTCTCCCC
TTCGGGAAAATCGTGGACATAGCGTTCTTTTGGCACATGCATGGCCCGCG
GAAAGGTGAGCCCAAAGGTTATTGTTTTCTCACGTTTGCGCACACAGAGG
ATGCCACTGCAGCAATTAAGGCATTGAACGACGTTCGCTTGCACGGTCGA
GCGATAGCAGTACGGTATCAGAGAGATGCGGATGAAGGAGGGAATGGCGC
AAGGTCGATGGTGTTTAAAGCACGAGCCAAAAGCATTCAGCAAGGCGGAA
GAAGAGATGGACGAGGAGTTGGTGGGGAGGGTAAGGACAACAGAACAGAA
GGATCAAGAGCAGCGGCAGCAGGCGTGGCCTCGGTCGCGTTACCAAAACG
GTCAAAATTAGCGTCAACAGCAGCAGCTGAGAGGGGAGGAAACGGGGGAA
GGGAGGGAGAGGAGGAAGAATCGGCATTGGAAGCCAAGATTCGCATGCTA
AGATTCCAGATTGCGGCAAGCAGTGGGGGTGGAGGTGGAGGACGGGGGTG
A
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Synonyms
Publications