NO06G03520, NO06G03520 (gene) Nannochloropsis oceanica

Overview
NameNO06G03520
Unique NameNO06G03520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2025
Alignment locationchr6:970921..972945 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:970921..972945 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO06G03520 vs. NCBI_GenBank
Match: EWM26346.1 (hypothetical protein Naga_100268g6 [Nannochloropsis gaditana])

HSP 1 Score: 169.1 bits (427), Expect = 2.900e-38
Identity = 109/247 (44.13%), Postives = 138/247 (55.87%), Query Frame = 0 
Query:  148 LSGSFHEGQARKWEMRFREEARRGLELDEALKVALAEAQQAVGALSTCQQEQTACCVTRGPTIMPWIRAQGQNGTKFKXXXXXXXXXXXXXXXXXXKTGATHPGHAYEFAGATIAPTSYSTDPKXXXXXXXXXXXXXXXXXXXXXXXXXXFPPSSGAATAMHLSNCLLQLHAGPGPCTTDALNQLTGCVGHVLTSSELVLKDVLRQSMNMVGKAQGLYDTVEASFDGAVAMAAGHVDGWLDVLARGL 395
            L GSF+EGQA KWE R+RE+  +G  ++ ALK ALAEA QA   L+ CQ+EQ +CC+TRGPT MP + A    G K +                  ++G     H++  +    + TS  + P+                   XXXXXXX     G++   HLS CLL L     PCT +AL  LTGCVGHVLTSSELVLK+ L+Q M M+GKAQ L D+VE   D A A A   VDGW++ LARGL
Sbjct:    9 LKGSFYEGQAGKWEARYREQVDKGRTMEAALKTALAEAMQARDGLALCQEEQASCCLTRGPTPMPAMPA-NPTGAKNESGTLESGTSSPANERRGGRSG-RKGAHSHPISNPDPSFTSVGSPPR------------PEPSVVPXXXXXXXXXXXGGSSPTPHLSRCLLHLDVNQSPCTAEALQHLTGCVGHVLTSSELVLKEALKQGMGMMGKAQSLVDSVENFVDEATAEALVRVDGWMEGLARGL 241
The following BLAST results are available for this feature:
BLAST of NO06G03520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26346.12.900e-3844.13hypothetical protein Naga_100268g6 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR029ncniR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000125NSK000125Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03520.1NO06G03520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597694gene_6678Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100268g6gene4182Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03520.1NO06G03520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03520 ID=NO06G03520|Name=NO06G03520|organism=Nannochloropsis oceanica|type=gene|length=2025bp
CTCATTGCTTGCGTGCAACCTTGCCTTAATTATTCTATCTTGGTCATTTG
TGCCATGATAATGCACGTTCCCCCATCACGCATATAGTGCTCAGGGTTTA
TATTCTGACGTCGGACACATCTCTAGTGGGAGCTTTGGGCTATTATTTGT
GTGGGCATTTTTGCGCCTGAGCAAGGATACGATTCAGTCAACCAGCTTGA
GCTTGCACTGACGAGCGGCATTTGGCTGATCACTAACCGGAGGCACCATG
CGACAGCGCAGTATCTTGCGCTTGCGGGCCATGGTAGTGATGGCCGTGGA
TTAGAGCACTGCGACTGTGTGCGGAGCGAGCTCGTCCTATGCCAGGCTTT
GCCTTAGCGCGTGACCTCCCTGTACTGAAAAGCTTAAAGCTCTTCAATGA
TCGCCTTTCCCTGCAATCCCTCTCATCTCGCGCTTCCCACACACCATCAG
GCCAGCCCAACCGCACACACGGGGCTGTGAGTAGGAGAAGTACCGATTTT
GGGTAAATGGGCGGCTACAACTCGTCTTCGTCCAGCAGCGGGGCGGGAAG
CCCGGAAGCTACTCCTCCTCGCCCCCCCCCCTCATCTAGCAGCAATCTTC
TCTGGGGCGACTCGGCCTCCTTTGAAAGGGTGGAACACGATCAGCAGCAG
CAGCAACAACCACTGTCACCGCTGCCGCGTGATCATACACAGATCCCCAC
GCAAAGCTTTGTGGGGTTGGGGCGGAGCTTGTCCTTGTCAGCGTCGTCAG
TCCTGAGTAGCATGACAATCAGCGCCAGCAGTCTCCTCAACACCAGCGGG
CCTGCCATGACACCTGAAGAAGAGGAGGAATTGACGGAATCAATGCTAAA
GCGTACGATGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGG
ATGACTTTGAGCAGATCCGCCGCGAGGATGCATTCCCCCCCCTCCTTCTT
TCAgtacctggatggcccccaaggtggactccgccctcacatccttgctc
acccccaagggtgtgatctccgccgtagttgtttatttggccatgtattg
gcgcttaaagGGGAGTTTCCACGAGGGGCAAGCTCGGAAATGGGAAATGC
GTTTTCGGGAGGAGGCCCGCCGGGGGTTGGAGCTCGATGAGGCGTTGAAG
GTGGCATTGGCGGAGGCACAACAGGCAGTTGGTGCCTTGTCTACTTGCCA
GCAGGAGCAGACTGCGTGTTGTGTGACCCGTGGACCGACGATCATGCCTT
GGATTCGAGCACAGGGGCAGAATGGGACTAAGTTTAAGAAGGAGCAGCTG
CAGCAGCAGCAGCAGCAGCAGCAGGAGAAGGTAGAGGCGCAAAAGACGGG
AGCCACACACCCTGGCCACGCTTATGAGTTTGCCGGCGCTACCATTGCCC
CCACGTCCTATTCTACTGATCCCAAAACAGCCGGCGCTACCATTGCCCCC
ACGTCCTATTCTACTGATCCCAAAACCTGTCCTCCGTCCGTGGAGTGTCC
CTCCTTCCCTCCCTCTTCGGGAGCGGCCACGGCCATGCATCTTTCCAATT
GTCTTTTGCAATTGCACGCGGGCCCGGGACCTTGTACAACTGATGCTCTC
AACCAGTTGACTGGCTGTGTGGGCCACGTGCTGACGTCTTCGGAGTTGGT
GCTGAAGGATGTGTTACGGCAGgtaggtctgcggggagggtcagtggatg
gactgttgactgcttccgttggcgtcatccttatcgccgtttgtttcatc
catagatctcctcctcgctcatctttttttcctttccttctgtactgtac
ttttgtcttccacgtaatctacagAGCATGAACATGGTGGGCAAGGCCCA
GGGGCTTTACGACACTGTCGAGGCGTCTTTTGATGGTGCTGTGGCTATGG
CCGCGGGGCATGTGGATGGGTGGTTGGACGTGCTGGCTCGGGGACTGGAG
GTGATTGATAAGGAGGATAATAAAGTGGAGGTGATAGAGGCGGTGGCGGC
CGCAGAGTTCGCAGAGGTGGAGTAG
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protein sequence of NO06G03520.1

>NO06G03520.1-protein ID=NO06G03520.1-protein|Name=NO06G03520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp
MGGYNSSSSSSGAGSPEATPPRPPPSSSSNLLWGDSASFERVEHDQQQQQ
QPLSPLPRDHTQIPTQSFVGLGRSLSLSASSVLSSMTISASSLLNTSGPA
MTPEEEEELTESMLKRTMEEEEEEEEEEEEEDDFEQIRREDAFPPLLLSG
SFHEGQARKWEMRFREEARRGLELDEALKVALAEAQQAVGALSTCQQEQT
ACCVTRGPTIMPWIRAQGQNGTKFKKEQLQQQQQQQQEKVEAQKTGATHP
GHAYEFAGATIAPTSYSTDPKTAGATIAPTSYSTDPKTCPPSVECPSFPP
SSGAATAMHLSNCLLQLHAGPGPCTTDALNQLTGCVGHVLTSSELVLKDV
LRQSMNMVGKAQGLYDTVEASFDGAVAMAAGHVDGWLDVLARGLEVIDKE
DNKVEVIEAVAAAEFAEVE*
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Synonyms
Publications