NO06G03520.1, NO06G03520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03520.1
Unique NameNO06G03520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1766
Alignment locationchr6:970921..972945 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:970921..972945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G03520.1 vs.
Match: EWM26346.1 (hypothetical protein Naga_100268g6 [Nannochloropsis gaditana])

HSP 1 Score: 180.3 bits (456), Expect = 1.300e-41
Identity = 110/247 (44.53%), Postives = 143/247 (57.89%), Query Frame = 0 
Query:  148 LSGSFHEGQARKWEMRFREEARRGLELDEALKVALAEAQQAVGALSTCQQEQTACCVTRGPTIMPWIRAQGQNGTKFKKEQLQQQQQQQQEKVEAQKTGATHPGHAYEFAGATIAPTSYSTDPKTAGATIAPTSYSTDPKTCPPSVECPSFPPSSGAATAMHLSNCLLQLHAGPGPCTTDALNQLTGCVGHVLTSSELVLKDVLRQSMNMVGKAQGLYDTVEASFDGAVAMAAGHVDGWLDVLARGL 395
            L GSF+EGQA KWE R+RE+  +G  ++ ALK ALAEA QA   L+ CQ+EQ +CC+TRGPT MP + A    G K +   L+        +    ++G     H++  +    + TS  + P+             +P   PP+   PSF P  G++   HLS CLL L     PCT +AL  LTGCVGHVLTSSELVLK+ L+Q M M+GKAQ L D+VE   D A A A   VDGW++ LARGL
Sbjct:    9 LKGSFYEGQAGKWEARYREQVDKGRTMEAALKTALAEAMQARDGLALCQEEQASCCLTRGPTPMPAMPAN-PTGAKNESGTLESGTSSPANERRGGRSGRKG-AHSHPISNPDPSFTSVGSPPRP------------EPSVVPPTPRRPSFLPPGGSSPTPHLSRCLLHLDVNQSPCTAEALQHLTGCVGHVLTSSELVLKEALKQGMGMMGKAQSLVDSVENFVDEATAEALVRVDGWMEGLARGL 241
The following BLAST results are available for this feature:
BLAST of NO06G03520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26346.11.300e-4144.53hypothetical protein Naga_100268g6 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03520NO06G03520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03520.1NO06G03520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03520.1.cds1NO06G03520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03520.1.cds2NO06G03520.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03520.1.cds3NO06G03520.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03520.1 ID=NO06G03520.1|Name=NO06G03520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1766bp
CTCATTGCTTGCGTGCAACCTTGCCTTAATTATTCTATCTTGGTCATTTG
TGCCATGATAATGCACGTTCCCCCATCACGCATATAGTGCTCAGGGTTTA
TATTCTGACGTCGGACACATCTCTAGTGGGAGCTTTGGGCTATTATTTGT
GTGGGCATTTTTGCGCCTGAGCAAGGATACGATTCAGTCAACCAGCTTGA
GCTTGCACTGACGAGCGGCATTTGGCTGATCACTAACCGGAGGCACCATG
CGACAGCGCAGTATCTTGCGCTTGCGGGCCATGGTAGTGATGGCCGTGGA
TTAGAGCACTGCGACTGTGTGCGGAGCGAGCTCGTCCTATGCCAGGCTTT
GCCTTAGCGCGTGACCTCCCTGTACTGAAAAGCTTAAAGCTCTTCAATGA
TCGCCTTTCCCTGCAATCCCTCTCATCTCGCGCTTCCCACACACCATCAG
GCCAGCCCAACCGCACACACGGGGCTGTGAGTAGGAGAAGTACCGATTTT
GGGTAAATGGGCGGCTACAACTCGTCTTCGTCCAGCAGCGGGGCGGGAAG
CCCGGAAGCTACTCCTCCTCGCCCCCCCCCCTCATCTAGCAGCAATCTTC
TCTGGGGCGACTCGGCCTCCTTTGAAAGGGTGGAACACGATCAGCAGCAG
CAGCAACAACCACTGTCACCGCTGCCGCGTGATCATACACAGATCCCCAC
GCAAAGCTTTGTGGGGTTGGGGCGGAGCTTGTCCTTGTCAGCGTCGTCAG
TCCTGAGTAGCATGACAATCAGCGCCAGCAGTCTCCTCAACACCAGCGGG
CCTGCCATGACACCTGAAGAAGAGGAGGAATTGACGGAATCAATGCTAAA
GCGTACGATGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGG
ATGACTTTGAGCAGATCCGCCGCGAGGATGCATTCCCCCCCCTCCTTCTT
TCAGGGAGTTTCCACGAGGGGCAAGCTCGGAAATGGGAAATGCGTTTTCG
GGAGGAGGCCCGCCGGGGGTTGGAGCTCGATGAGGCGTTGAAGGTGGCAT
TGGCGGAGGCACAACAGGCAGTTGGTGCCTTGTCTACTTGCCAGCAGGAG
CAGACTGCGTGTTGTGTGACCCGTGGACCGACGATCATGCCTTGGATTCG
AGCACAGGGGCAGAATGGGACTAAGTTTAAGAAGGAGCAGCTGCAGCAGC
AGCAGCAGCAGCAGCAGGAGAAGGTAGAGGCGCAAAAGACGGGAGCCACA
CACCCTGGCCACGCTTATGAGTTTGCCGGCGCTACCATTGCCCCCACGTC
CTATTCTACTGATCCCAAAACAGCCGGCGCTACCATTGCCCCCACGTCCT
ATTCTACTGATCCCAAAACCTGTCCTCCGTCCGTGGAGTGTCCCTCCTTC
CCTCCCTCTTCGGGAGCGGCCACGGCCATGCATCTTTCCAATTGTCTTTT
GCAATTGCACGCGGGCCCGGGACCTTGTACAACTGATGCTCTCAACCAGT
TGACTGGCTGTGTGGGCCACGTGCTGACGTCTTCGGAGTTGGTGCTGAAG
GATGTGTTACGGCAGAGCATGAACATGGTGGGCAAGGCCCAGGGGCTTTA
CGACACTGTCGAGGCGTCTTTTGATGGTGCTGTGGCTATGGCCGCGGGGC
ATGTGGATGGGTGGTTGGACGTGCTGGCTCGGGGACTGGAGGTGATTGAT
AAGGAGGATAATAAAGTGGAGGTGATAGAGGCGGTGGCGGCCGCAGAGTT
CGCAGAGGTGGAGTAG
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protein sequence of NO06G03520.1

>NO06G03520.1-protein ID=NO06G03520.1-protein|Name=NO06G03520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp
MGGYNSSSSSSGAGSPEATPPRPPPSSSSNLLWGDSASFERVEHDQQQQQ
QPLSPLPRDHTQIPTQSFVGLGRSLSLSASSVLSSMTISASSLLNTSGPA
MTPEEEEELTESMLKRTMEEEEEEEEEEEEEDDFEQIRREDAFPPLLLSG
SFHEGQARKWEMRFREEARRGLELDEALKVALAEAQQAVGALSTCQQEQT
ACCVTRGPTIMPWIRAQGQNGTKFKKEQLQQQQQQQQEKVEAQKTGATHP
GHAYEFAGATIAPTSYSTDPKTAGATIAPTSYSTDPKTCPPSVECPSFPP
SSGAATAMHLSNCLLQLHAGPGPCTTDALNQLTGCVGHVLTSSELVLKDV
LRQSMNMVGKAQGLYDTVEASFDGAVAMAAGHVDGWLDVLARGLEVIDKE
DNKVEVIEAVAAAEFAEVE*
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mRNA from alignment at chr6:970921..972945+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03520.1 ID=NO06G03520.1|Name=NO06G03520.1|organism=Nannochloropsis oceanica|type=mRNA|length=2025bp|location=Sequence derived from alignment at chr6:970921..972945+ (Nannochloropsis oceanica)
CTCATTGCTTGCGTGCAACCTTGCCTTAATTATTCTATCTTGGTCATTTG
TGCCATGATAATGCACGTTCCCCCATCACGCATATAGTGCTCAGGGTTTA
TATTCTGACGTCGGACACATCTCTAGTGGGAGCTTTGGGCTATTATTTGT
GTGGGCATTTTTGCGCCTGAGCAAGGATACGATTCAGTCAACCAGCTTGA
GCTTGCACTGACGAGCGGCATTTGGCTGATCACTAACCGGAGGCACCATG
CGACAGCGCAGTATCTTGCGCTTGCGGGCCATGGTAGTGATGGCCGTGGA
TTAGAGCACTGCGACTGTGTGCGGAGCGAGCTCGTCCTATGCCAGGCTTT
GCCTTAGCGCGTGACCTCCCTGTACTGAAAAGCTTAAAGCTCTTCAATGA
TCGCCTTTCCCTGCAATCCCTCTCATCTCGCGCTTCCCACACACCATCAG
GCCAGCCCAACCGCACACACGGGGCTGTGAGTAGGAGAAGTACCGATTTT
GGGTAAATGGGCGGCTACAACTCGTCTTCGTCCAGCAGCGGGGCGGGAAG
CCCGGAAGCTACTCCTCCTCGCCCCCCCCCCTCATCTAGCAGCAATCTTC
TCTGGGGCGACTCGGCCTCCTTTGAAAGGGTGGAACACGATCAGCAGCAG
CAGCAACAACCACTGTCACCGCTGCCGCGTGATCATACACAGATCCCCAC
GCAAAGCTTTGTGGGGTTGGGGCGGAGCTTGTCCTTGTCAGCGTCGTCAG
TCCTGAGTAGCATGACAATCAGCGCCAGCAGTCTCCTCAACACCAGCGGG
CCTGCCATGACACCTGAAGAAGAGGAGGAATTGACGGAATCAATGCTAAA
GCGTACGATGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGG
ATGACTTTGAGCAGATCCGCCGCGAGGATGCATTCCCCCCCCTCCTTCTT
TCAGTACCTGGATGGCCCCCAAGGTGGACTCCGCCCTCACATCCTTGCTC
ACCCCCAAGGGTGTGATCTCCGCCGTAGTTGTTTATTTGGCCATGTATTG
GCGCTTAAAGGGGAGTTTCCACGAGGGGCAAGCTCGGAAATGGGAAATGC
GTTTTCGGGAGGAGGCCCGCCGGGGGTTGGAGCTCGATGAGGCGTTGAAG
GTGGCATTGGCGGAGGCACAACAGGCAGTTGGTGCCTTGTCTACTTGCCA
GCAGGAGCAGACTGCGTGTTGTGTGACCCGTGGACCGACGATCATGCCTT
GGATTCGAGCACAGGGGCAGAATGGGACTAAGTTTAAGAAGGAGCAGCTG
CAGCAGCAGCAGCAGCAGCAGCAGGAGAAGGTAGAGGCGCAAAAGACGGG
AGCCACACACCCTGGCCACGCTTATGAGTTTGCCGGCGCTACCATTGCCC
CCACGTCCTATTCTACTGATCCCAAAACAGCCGGCGCTACCATTGCCCCC
ACGTCCTATTCTACTGATCCCAAAACCTGTCCTCCGTCCGTGGAGTGTCC
CTCCTTCCCTCCCTCTTCGGGAGCGGCCACGGCCATGCATCTTTCCAATT
GTCTTTTGCAATTGCACGCGGGCCCGGGACCTTGTACAACTGATGCTCTC
AACCAGTTGACTGGCTGTGTGGGCCACGTGCTGACGTCTTCGGAGTTGGT
GCTGAAGGATGTGTTACGGCAGGTAGGTCTGCGGGGAGGGTCAGTGGATG
GACTGTTGACTGCTTCCGTTGGCGTCATCCTTATCGCCGTTTGTTTCATC
CATAGATCTCCTCCTCGCTCATCTTTTTTTCCTTTCCTTCTGTACTGTAC
TTTTGTCTTCCACGTAATCTACAGAGCATGAACATGGTGGGCAAGGCCCA
GGGGCTTTACGACACTGTCGAGGCGTCTTTTGATGGTGCTGTGGCTATGG
CCGCGGGGCATGTGGATGGGTGGTTGGACGTGCTGGCTCGGGGACTGGAG
GTGATTGATAAGGAGGATAATAAAGTGGAGGTGATAGAGGCGGTGGCGGC
CGCAGAGTTCGCAGAGGTGGAGTAG
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Coding sequence (CDS) from alignment at chr6:970921..972945+

>NO06G03520.1 ID=NO06G03520.1|Name=NO06G03520.1|organism=Nannochloropsis oceanica|type=CDS|length=1260bp|location=Sequence derived from alignment at chr6:970921..972945+ (Nannochloropsis oceanica)
ATGGGCGGCTACAACTCGTCTTCGTCCAGCAGCGGGGCGGGAAGCCCGGA
AGCTACTCCTCCTCGCCCCCCCCCCTCATCTAGCAGCAATCTTCTCTGGG
GCGACTCGGCCTCCTTTGAAAGGGTGGAACACGATCAGCAGCAGCAGCAA
CAACCACTGTCACCGCTGCCGCGTGATCATACACAGATCCCCACGCAAAG
CTTTGTGGGGTTGGGGCGGAGCTTGTCCTTGTCAGCGTCGTCAGTCCTGA
GTAGCATGACAATCAGCGCCAGCAGTCTCCTCAACACCAGCGGGCCTGCC
ATGACACCTGAAGAAGAGGAGGAATTGACGGAATCAATGCTAAAGCGTAC
GATGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGGATGACT
TTGAGCAGATCCGCCGCGAGGATGCATTCCCCCCCCTCCTTCTTTCAGGG
AGTTTCCACGAGGGGCAAGCTCGGAAATGGGAAATGCGTTTTCGGGAGGA
GGCCCGCCGGGGGTTGGAGCTCGATGAGGCGTTGAAGGTGGCATTGGCGG
AGGCACAACAGGCAGTTGGTGCCTTGTCTACTTGCCAGCAGGAGCAGACT
GCGTGTTGTGTGACCCGTGGACCGACGATCATGCCTTGGATTCGAGCACA
GGGGCAGAATGGGACTAAGTTTAAGAAGGAGCAGCTGCAGCAGCAGCAGC
AGCAGCAGCAGGAGAAGGTAGAGGCGCAAAAGACGGGAGCCACACACCCT
GGCCACGCTTATGAGTTTGCCGGCGCTACCATTGCCCCCACGTCCTATTC
TACTGATCCCAAAACAGCCGGCGCTACCATTGCCCCCACGTCCTATTCTA
CTGATCCCAAAACCTGTCCTCCGTCCGTGGAGTGTCCCTCCTTCCCTCCC
TCTTCGGGAGCGGCCACGGCCATGCATCTTTCCAATTGTCTTTTGCAATT
GCACGCGGGCCCGGGACCTTGTACAACTGATGCTCTCAACCAGTTGACTG
GCTGTGTGGGCCACGTGCTGACGTCTTCGGAGTTGGTGCTGAAGGATGTG
TTACGGCAGAGCATGAACATGGTGGGCAAGGCCCAGGGGCTTTACGACAC
TGTCGAGGCGTCTTTTGATGGTGCTGTGGCTATGGCCGCGGGGCATGTGG
ATGGGTGGTTGGACGTGCTGGCTCGGGGACTGGAGGTGATTGATAAGGAG
GATAATAAAGTGGAGGTGATAGAGGCGGTGGCGGCCGCAGAGTTCGCAGA
GGTGGAGTAG
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Synonyms
Publications