NO06G03020, NO06G03020 (gene) Nannochloropsis oceanica

Overview
NameNO06G03020
Unique NameNO06G03020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2608
Alignment locationchr6:860339..862946 +

Link to JBrowse

Properties
Property NameValue
DescriptionSNARE associated Golgi protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:860339..862946 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR015414Tvp38/TMEM64-like
IPR032816SNARE_assoc
Homology
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BLAST of NO06G03020 vs. NCBI_GenBank
Match: EWM26339.1 (SNARE associated Golgi protein [Nannochloropsis gaditana])

HSP 1 Score: 330.1 bits (845), Expect = 1.400e-86
Identity = 210/400 (52.50%), Postives = 246/400 (61.50%), Query Frame = 0 
Query:   15 AQQALPRPLQQATADSPARTDMDDEESTADFTEDMIETMASAAGMHLMPPLVTLSLNXXXXXXXXGKPKAC----TQQHLCLRIDEAVEDGDDH--LHEFDPTALSSCTSQTSRANKCKGTCGTLKKLRPVLLLLVVVTTFLVSGSYLVVRYRDKVLEASEYIRQQAPRSAVYYALIVALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCTIAFLIGKVVASRAIRDTLGRPHRVSSSTILAAEGKGERSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWSSSKPMSKRKRTIQAMFYAMECHPWKITLLLRFLPIPISVKNYGMACLPCPTHVFLISTFVASLPFTFIWVNLGESTKSLLEALSGKGESMGKHGLFAQEIAL 409
            A + L  PL   +A SP      D ES+  FTEDMIE MASAA   + PP V L            K        + +H+CL++++ V    +        PTAL S     SR   C+    TL++LR +LL+L VV    V+GSYL VRYRD+VLE SE+IR  AP+SAVYYALI ALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGC +AFL+ KV AS  +RD LG  H   S T      +G+  N                                          SKPMSKRKRTI+AMF AMECHPWKIT LLRFLPIPIS+KNYGMA LPCPTHVF + TFVAS+PFT IWVNLGESTK+LLEAL+G G +M +HG+FAQE+ L
Sbjct:   50 AGELLNSPL--PSAPSPESLTSRD-ESSIGFTEDMIEMMASAAA--IRPPSVNLPPRENITQENERKTDNFYDDRSSRHVCLQMNDTVSGAGEKEGNQSVGPTALPS-----SRQGFCRRAYKTLRRLRSMLLVLSVVLICAVAGSYLCVRYRDQVLEGSEWIRAHAPQSAVYYALITALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCMLAFLLAKVFASPTLRDALG--HSSHSPT------RGKEPNESVVENNDQEGGDAPSLRHSRFPAAA--------------RPSKPMSKRKRTIRAMFIAMECHPWKITFLLRFLPIPISIKNYGMAFLPCPTHVFFLCTFVASIPFTLIWVNLGESTKNLLEALNGGGAAMKRHGIFAQELGL 417
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BLAST of NO06G03020 vs. NCBI_GenBank
Match: EWM20987.1 (SNARE associated Golgi protein [Nannochloropsis gaditana])

HSP 1 Score: 160.6 bits (405), Expect = 1.500e-35
Identity = 96/258 (37.21%), Postives = 131/258 (50.78%), Query Frame = 0 
Query:  136 LRPVLLLLVVVTTFLVSGSYLVVRYRDKVLEASEYIRQQAPRSAVYYALIVALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCTIAFLIGKVVASRAIRDTLGRPHRVSSSTILAAEGKGERSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWSSSKPMSKRKRTIQAMFYAMECHPWKITLLLRFLPIPISVKNYGMACLPCPTHVFLISTFVASLPFTFIWVNLGESTKSLLEALSGKG 394
            L PVL LL VV+  LV+G  L+  +  ++ +   +++ +AP SA+YYA    LW++LCLPST+IEL GG IF  PV LLT+ V K  GC +AFL+G+ VA+ ++R  L  P                                                                        +A+F AME HPWK+TLLLRF+ +PI+VKNYGMA LPCP  VF + T  ASLP+T +W + G S++SL + L G G
Sbjct:   88 LCPVLSLLAVVSLLLVTGGTLLALFHSRLTDLMAWVQARAPLSALYYAAFTVLWVLLCLPSTLIELCGGFIFGLPVTLLTVGVAKPFGCCLAFLLGRCVAADSLRQGLLLP-------------------------------------------------------PVRXXXXXXXXXXXXXXRALFLAMERHPWKVTLLLRFMYLPIAVKNYGMAALPCPFPVFALCTLAASLPYTLLWAHAGASSRSLYDVLGGGG 290
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BLAST of NO06G03020 vs. NCBI_GenBank
Match: EWM28436.1 (hypothetical protein Naga_100924g3 [Nannochloropsis gaditana])

HSP 1 Score: 158.7 bits (400), Expect = 5.500e-35
Identity = 126/334 (37.72%), Postives = 182/334 (54.49%), Query Frame = 0 
Query:  115 SCTSQT----SRANKCKGTCGTLKKLRPVLLLLVVVTTFLVSGSYLVVRYRDKVLEASEYIRQQAPRSAVYYALIVALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCTIAFLIGKVVASRAIRD------TLGRPHRVSSSTIL-AAEGKGERSN--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWSSSKPMSKRKRTI---------------------QAMFYAMECHPWKITLLLRFLPIPISVKNYGMACLPCPTHVFLISTFVASLPFTFIWVNLGESTKSLLEALSGKGESMGKHGLFAQEIAL 409
            SC+S T    SR   C+     L   R  + L  +V   L  GS+ + +Y+D++L+ ++YI+ +AP SAVY AL++ALWIILCLP+T++E++ G I+++PVA ++LTVGKQLGC + F IG+ + + + +D      T G    V+ +  L  A   G R+         XXXXXXXXXXXXXXXXXXX                       ++P                              A+ +A++ HPW+I  LLR LP+PI  KNYGMACLP P  ++ +   VA +PFT +W+++G S +SLLEA++G G   GK   +  EI L
Sbjct:   79 SCSSTTIGHRSRGAACR---DFLINHRRFVFLFFLVVLLLALGSFALAQYKDELLQGAQYIQDRAPLSAVYMALLLALWIILCLPATLLEVVAGMIYTWPVAFVSLTVGKQLGCNLGFSIGQCITTGSFQDNFLSKLTKGEQDAVARARALERASSAGPRAGGELEXXXXXXXXXXXXXXXXXXXXXXXRQVAPQANGQVPTPHVASMVGGDARPARXXXXXXXXXXXXXXXXXXXXXXXGTPKDALLWAVKKHPWQICFLLRLLPVPIGAKNYGMACLPFPVLIYSLCVLVAEMPFTILWIHIGRSCRSLLEAMNGHGS--GKRRSYWHEILL 407
The following BLAST results are available for this feature:
BLAST of NO06G03020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM26339.11.400e-8652.50SNARE associated Golgi protein [Nannochloropsis ga... [more]
EWM20987.11.500e-3537.21SNARE associated Golgi protein [Nannochloropsis ga... [more]
EWM28436.15.500e-3537.72hypothetical protein Naga_100924g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR029ncniR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000153NSK000153Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03020.1NO06G03020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640914gene_6634Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100078g2gene4210Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03020.1NO06G03020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03020 ID=NO06G03020|Name=NO06G03020|organism=Nannochloropsis oceanica|type=gene|length=2608bp
ACAGTCCAGAATGACAAGTCGACGGGTTGCGCCGTCAGGAGGGCTTTGCC
ATGCCCAACAAGCACTACCACGCCCATTGCAACAAGCCACAGCAGATTCG
CCTGCTCGAACAGACATGGATGATGAGGAGAGCACGGCAGACTTCACCGA
GGACATGATCGAGACGATGGCATCGGCCGCGGGCATGCATCTAATGCCCC
CCCTGGTTACTTTGTCCTTGAACGACGATGATGAGGAGGAAGAAAAGGGC
AAGCCGAAAGCATGCACGCAACAGCACCTCTGCCTACGGATTGACGAAGC
GGTCGAGGACGGCGACGACCATCTGCATGAATTTGACCCGACTGCACTTT
CTTCCTGCACTTCCCAAACGTCAAGAGCCAATAAATGCAAGGGCACGTGT
GGCACGCTGAAAAAATTGCGGCCGGTCCTGCTGCTTTTGGTGGTGGTAAC
GACGTTCCTTGTGAGCGGCAGCTACTTGGTAGTGCGGTACCGGGACAAGG
TGTTGGAAGCTTCAGAATACATTCGCCAGCAAGCCCCTCGTTCTGCCGTG
TACTATGCTTTGATTGTGGCTTTGTGGATAATCTTGTGCTTGCCTTCTAC
AATCATAGAGTTGCTGGGTGGGGCAATATTTTCGTACCCTGTGGCGTTGC
TGACGTTGACGGTGGGCAAGCAGCTTGGATGCACGATTGCCTTTCTGATT
GGGAAGGTCGTGGCGTCTAGAGCCATACGGGACACATTGGGTCGGCCGCA
TCGTGTGTCTTCCTCTACAATATTAGCGGCAGAGGGAAAGGGAGAGCGGA
GCAATACTACTATTGCGGTTGCTGGTAGTGATGAGCAGCAGAAAGCGTCT
CAGGGAAGACGACGCGGACGACAACCCGCCAGCGCCAGCGGCAGTGACAG
CAGCAGTACCAAGCGGGGCAGGTGGAGCAGCTCCAAACCTATGTCCAAGC
GAAAGCGGACGATACAAGCCATGTTCTACGCCATGGAATGCCATCCGTGG
AAGATCACGCTCCTCCTCCGCTTCCTCCCCATCCCAATCAGTGTCAAAAA
CTACGGCATGGCCTGCCTGCCTTGTCCGACACATGTATTTCTCATCTCCA
CCTTTGTTGCTTCCCTTCCTTTCACCTTCATTTGGGTCAACCTAGGGGAG
TCGACCAAGAGTTTGTTGGAGGCACTAAGTGGCAAGGGGGAATCCATGGG
AAAGCATGGGCTCTTCGCACAGGAGATCGCTTTACTGGTGGTGGGCCTGC
TGCTGCTGATACTGCTTGTGGTGATATTGAAACGATACACGCATCGATAC
GCGGCCGTTTTGGAGGCGGAGGAAACAGCACGTTTGGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCCGTAGCGGAGCAGGGGGCGGGGGGAGGGC
AGGATGGACATAGCACGGTAAGGAGTAATTTGACGCTGTCGTCGATACCG
ACATGGACATTGACAGAGGAGGAGGGCGGGGACGAGGGAGGAAGGGAGGA
AGGGGAGGAAGATGAGGATGCGCGGAGTTGCTTCGGGTGGCGAAGACATA
GTCGGGAGTCATTCGTCGAGAGGGAGATCGTGGAGGGACGTGGGATCGCG
GGAGGCGAGGTGTCATTGGTGGTGGTGCCTTCTCTGATGAAAGCAACAGA
GGAGACCATAAATGACAGGAAGAAGATGGGGAGGAGGGGGAGGAAGAGGA
GAAGGAGGAGGAAGAAGTGGTCGGAAGTCCTTCTTGTAGTGTGGCATCCG
TAGCTTAAGGTTTAAGGGACATTGAGTAAGATTGAGTGAGTGGTGTGATA
TTGAATGAGATGAAGTAAGTGAGGTTGAGTGTGTGAGATTGAGTAAGCTT
GAACAGAAGAGCAAAGAGTGTTGGGAATTCGAGGATCAGCAAGAGGAGGA
GAAGAAGCAGCAAAGGCGGGTGGGGGAAAGGGGGGGGCGAGAAGAGTACC
AAAGCATGAAGACATTGAACGTGGTTTGTGAGGGTGAAGATTCGAAGGAC
TAGATTGAGACAACAGAGAGAGAAGAGGTAAGAGATGACAGGGAGAAGAG
AGAAACGTGGATTGAGACAGCAGAGAGAGGAGAGGTGAGAACTAACAGGG
AGAAGAGAGAAACGGACGATGATGGTACGCTTAGCAGCTCAATAATGAGT
CGTCTTAACTGTACATCCAAATGAATTGATGGGGAGTAGATGCAGTAGTA
GATGCAGTAGTAGTAGCAGTAGTAGTAGCAGTAGTAGTAGTAGTAGTATC
AATAGTAGCAGTAGTAGTATCAATATTTGGAGTTGAATATGATGGTGAGT
TTCGCTTTGCACTGCATGTGGGTTTGTGTTGTGTATCTGTCTGTTTGTGT
CCTTCGGTGCGTGTGAGAAAATGAGCGGATATAAGTGCAAATTCATGTTA
AGATTGCACGCAAGCAATTACGGGGCAGTTAAAGCAATTATCATTCGTCA
GACTGCCATAATATACCTAGGCAGGCGTATCCAAATAACCATGTATATTG
GGAGAACAAGAACAAGGAGGAGAAGGAGGACGACGAGGAGAAGAAGAAGA
AGAAGGAGAAGGAGAAGGAGAAGAAGGAGATAAAGAAATATGAACATTGG
AATCGACG
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protein sequence of NO06G03020.1

>NO06G03020.1-protein ID=NO06G03020.1-protein|Name=NO06G03020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp
MTSRRVAPSGGLCHAQQALPRPLQQATADSPARTDMDDEESTADFTEDMI
ETMASAAGMHLMPPLVTLSLNDDDEEEEKGKPKACTQQHLCLRIDEAVED
GDDHLHEFDPTALSSCTSQTSRANKCKGTCGTLKKLRPVLLLLVVVTTFL
VSGSYLVVRYRDKVLEASEYIRQQAPRSAVYYALIVALWIILCLPSTIIE
LLGGAIFSYPVALLTLTVGKQLGCTIAFLIGKVVASRAIRDTLGRPHRVS
SSTILAAEGKGERSNTTIAVAGSDEQQKASQGRRRGRQPASASGSDSSST
KRGRWSSSKPMSKRKRTIQAMFYAMECHPWKITLLLRFLPIPISVKNYGM
ACLPCPTHVFLISTFVASLPFTFIWVNLGESTKSLLEALSGKGESMGKHG
LFAQEIALLVVGLLLLILLVVILKRYTHRYAAVLEAEETARLAAAAAAAA
AAAAVAEQGAGGGQDGHSTVRSNLTLSSIPTWTLTEEEGGDEGGREEGEE
DEDARSCFGWRRHSRESFVEREIVEGRGIAGGEVSLVVVPSLMKATEETI
NDRKKMGRRGRKRRRRRKKWSEVLLVVWHP*
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Synonyms
Publications