NO06G03020.1, NO06G03020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03020.1
Unique NameNO06G03020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2608
Alignment locationchr6:860339..862946 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:860339..862946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G03020.1 vs.
Match: EWM26339.1 (SNARE associated Golgi protein [Nannochloropsis gaditana])

HSP 1 Score: 372.1 bits (954), Expect = 3.200e-99
Identity = 261/523 (49.90%), Postives = 320/523 (61.19%), Query Frame = 0 
Query:   15 AQQALPRPLQQATADSPARTDMDDEESTADFTEDMIETMASAAGMHLMPPLVTLSLNDDDEEEEKGKPKAC----TQQHLCLRIDEAVEDGDDHL--HEFDPTALSSCTSQTSRANKCKGTCGTLKKLRPVLLLLVVVTTFLVSGSYLVVRYRDKVLEASEYIRQQAPRSAVYYALIVALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCTIAFLIGKVVASRAIRDTLGRPHRVSSSTILAAEGKGERSNTTIAVAGSDEQQKASQGRRRGRQPASASGSDSSSTKRGRWSSSKPMSKRKRTIQAMFYAMECHPWKITLLLRFLPIPISVKNYGMACLPCPTHVFLISTFVASLPFTFIWVNLGESTKSLLEALSGKGESMGKHGLFAQEIALLVVGLLLLILLVVILKRYTHRYAAVLEAEETARLAAAAAAAAAAAAVAEQGAGGGQDGHSTVRSNLTLSSIPTWTLTEEEGGDEGGREEGEEDEDARSCFGWRRHSRESFVEREIVEGRGIAG 532
            A + L  PL   +A SP      DE S   FTEDMIE MASAA +   PP V L   ++  +E + K        + +H+CL++++ V    +        PTAL S     SR   C+    TL++LR +LL+L VV    V+GSYL VRYRD+VLE SE+IR  AP+SAVYYALI ALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGC +AFL+ KV AS  +RD LG  H   S T      +G+  N ++ V  +D++   +   R  R PA+A               SKPMSKRKRTI+AMF AMECHPWKIT LLRFLPIPIS+KNYGMA LPCPTHVF + TFVAS+PFT IWVNLGESTK+LLEAL+G G +M +HG+FAQE+ LLVVGL LL++L+ IL+RYT RYAAV+EAEE   +   A  A         G G G++   T                     DEGG +   ED+D R     +R   +S  ER   +G G  G
Sbjct:   50 AGELLNSPLP--SAPSPESLTSRDESSIG-FTEDMIEMMASAAAIR--PPSVNLPPRENITQENERKTDNFYDDRSSRHVCLQMNDTVSGAGEKEGNQSVGPTALPS-----SRQGFCRRAYKTLRRLRSMLLVLSVVLICAVAGSYLCVRYRDQVLEGSEWIRAHAPQSAVYYALITALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCMLAFLLAKVFASPTLRDALG--HSSHSPT------RGKEPNESV-VENNDQEGGDAPSLRHSRFPAAA-------------RPSKPMSKRKRTIRAMFIAMECHPWKITFLLRFLPIPISIKNYGMAFLPCPTHVFFLCTFVASIPFTLIWVNLGESTKNLLEALNGGGAAMKRHGIFAQELGLLVVGLALLMVLIFILRRYTQRYAAVIEAEEADGVGTGAERA---------GDGKGEEDSLT-------------------RADEGGSKRA-EDDDRRGVDPKKRGHGDS-NERSQAKGAGEEG 510
The following BLAST results are available for this feature:
BLAST of NO06G03020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26339.13.200e-9949.90SNARE associated Golgi protein [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03020NO06G03020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03020.1NO06G03020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03020.1.cds1NO06G03020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03020.1 ID=NO06G03020.1|Name=NO06G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2608bp
ACAGTCCAGAATGACAAGTCGACGGGTTGCGCCGTCAGGAGGGCTTTGCC
ATGCCCAACAAGCACTACCACGCCCATTGCAACAAGCCACAGCAGATTCG
CCTGCTCGAACAGACATGGATGATGAGGAGAGCACGGCAGACTTCACCGA
GGACATGATCGAGACGATGGCATCGGCCGCGGGCATGCATCTAATGCCCC
CCCTGGTTACTTTGTCCTTGAACGACGATGATGAGGAGGAAGAAAAGGGC
AAGCCGAAAGCATGCACGCAACAGCACCTCTGCCTACGGATTGACGAAGC
GGTCGAGGACGGCGACGACCATCTGCATGAATTTGACCCGACTGCACTTT
CTTCCTGCACTTCCCAAACGTCAAGAGCCAATAAATGCAAGGGCACGTGT
GGCACGCTGAAAAAATTGCGGCCGGTCCTGCTGCTTTTGGTGGTGGTAAC
GACGTTCCTTGTGAGCGGCAGCTACTTGGTAGTGCGGTACCGGGACAAGG
TGTTGGAAGCTTCAGAATACATTCGCCAGCAAGCCCCTCGTTCTGCCGTG
TACTATGCTTTGATTGTGGCTTTGTGGATAATCTTGTGCTTGCCTTCTAC
AATCATAGAGTTGCTGGGTGGGGCAATATTTTCGTACCCTGTGGCGTTGC
TGACGTTGACGGTGGGCAAGCAGCTTGGATGCACGATTGCCTTTCTGATT
GGGAAGGTCGTGGCGTCTAGAGCCATACGGGACACATTGGGTCGGCCGCA
TCGTGTGTCTTCCTCTACAATATTAGCGGCAGAGGGAAAGGGAGAGCGGA
GCAATACTACTATTGCGGTTGCTGGTAGTGATGAGCAGCAGAAAGCGTCT
CAGGGAAGACGACGCGGACGACAACCCGCCAGCGCCAGCGGCAGTGACAG
CAGCAGTACCAAGCGGGGCAGGTGGAGCAGCTCCAAACCTATGTCCAAGC
GAAAGCGGACGATACAAGCCATGTTCTACGCCATGGAATGCCATCCGTGG
AAGATCACGCTCCTCCTCCGCTTCCTCCCCATCCCAATCAGTGTCAAAAA
CTACGGCATGGCCTGCCTGCCTTGTCCGACACATGTATTTCTCATCTCCA
CCTTTGTTGCTTCCCTTCCTTTCACCTTCATTTGGGTCAACCTAGGGGAG
TCGACCAAGAGTTTGTTGGAGGCACTAAGTGGCAAGGGGGAATCCATGGG
AAAGCATGGGCTCTTCGCACAGGAGATCGCTTTACTGGTGGTGGGCCTGC
TGCTGCTGATACTGCTTGTGGTGATATTGAAACGATACACGCATCGATAC
GCGGCCGTTTTGGAGGCGGAGGAAACAGCACGTTTGGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCCGTAGCGGAGCAGGGGGCGGGGGGAGGGC
AGGATGGACATAGCACGGTAAGGAGTAATTTGACGCTGTCGTCGATACCG
ACATGGACATTGACAGAGGAGGAGGGCGGGGACGAGGGAGGAAGGGAGGA
AGGGGAGGAAGATGAGGATGCGCGGAGTTGCTTCGGGTGGCGAAGACATA
GTCGGGAGTCATTCGTCGAGAGGGAGATCGTGGAGGGACGTGGGATCGCG
GGAGGCGAGGTGTCATTGGTGGTGGTGCCTTCTCTGATGAAAGCAACAGA
GGAGACCATAAATGACAGGAAGAAGATGGGGAGGAGGGGGAGGAAGAGGA
GAAGGAGGAGGAAGAAGTGGTCGGAAGTCCTTCTTGTAGTGTGGCATCCG
TAGCTTAAGGTTTAAGGGACATTGAGTAAGATTGAGTGAGTGGTGTGATA
TTGAATGAGATGAAGTAAGTGAGGTTGAGTGTGTGAGATTGAGTAAGCTT
GAACAGAAGAGCAAAGAGTGTTGGGAATTCGAGGATCAGCAAGAGGAGGA
GAAGAAGCAGCAAAGGCGGGTGGGGGAAAGGGGGGGGCGAGAAGAGTACC
AAAGCATGAAGACATTGAACGTGGTTTGTGAGGGTGAAGATTCGAAGGAC
TAGATTGAGACAACAGAGAGAGAAGAGGTAAGAGATGACAGGGAGAAGAG
AGAAACGTGGATTGAGACAGCAGAGAGAGGAGAGGTGAGAACTAACAGGG
AGAAGAGAGAAACGGACGATGATGGTACGCTTAGCAGCTCAATAATGAGT
CGTCTTAACTGTACATCCAAATGAATTGATGGGGAGTAGATGCAGTAGTA
GATGCAGTAGTAGTAGCAGTAGTAGTAGCAGTAGTAGTAGTAGTAGTATC
AATAGTAGCAGTAGTAGTATCAATATTTGGAGTTGAATATGATGGTGAGT
TTCGCTTTGCACTGCATGTGGGTTTGTGTTGTGTATCTGTCTGTTTGTGT
CCTTCGGTGCGTGTGAGAAAATGAGCGGATATAAGTGCAAATTCATGTTA
AGATTGCACGCAAGCAATTACGGGGCAGTTAAAGCAATTATCATTCGTCA
GACTGCCATAATATACCTAGGCAGGCGTATCCAAATAACCATGTATATTG
GGAGAACAAGAACAAGGAGGAGAAGGAGGACGACGAGGAGAAGAAGAAGA
AGAAGGAGAAGGAGAAGGAGAAGAAGGAGATAAAGAAATATGAACATTGG
AATCGACG
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protein sequence of NO06G03020.1

>NO06G03020.1-protein ID=NO06G03020.1-protein|Name=NO06G03020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp
MTSRRVAPSGGLCHAQQALPRPLQQATADSPARTDMDDEESTADFTEDMI
ETMASAAGMHLMPPLVTLSLNDDDEEEEKGKPKACTQQHLCLRIDEAVED
GDDHLHEFDPTALSSCTSQTSRANKCKGTCGTLKKLRPVLLLLVVVTTFL
VSGSYLVVRYRDKVLEASEYIRQQAPRSAVYYALIVALWIILCLPSTIIE
LLGGAIFSYPVALLTLTVGKQLGCTIAFLIGKVVASRAIRDTLGRPHRVS
SSTILAAEGKGERSNTTIAVAGSDEQQKASQGRRRGRQPASASGSDSSST
KRGRWSSSKPMSKRKRTIQAMFYAMECHPWKITLLLRFLPIPISVKNYGM
ACLPCPTHVFLISTFVASLPFTFIWVNLGESTKSLLEALSGKGESMGKHG
LFAQEIALLVVGLLLLILLVVILKRYTHRYAAVLEAEETARLAAAAAAAA
AAAAVAEQGAGGGQDGHSTVRSNLTLSSIPTWTLTEEEGGDEGGREEGEE
DEDARSCFGWRRHSRESFVEREIVEGRGIAGGEVSLVVVPSLMKATEETI
NDRKKMGRRGRKRRRRRKKWSEVLLVVWHP*
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mRNA from alignment at chr6:860339..862946+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03020.1 ID=NO06G03020.1|Name=NO06G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2608bp|location=Sequence derived from alignment at chr6:860339..862946+ (Nannochloropsis oceanica)
ACAGTCCAGAATGACAAGTCGACGGGTTGCGCCGTCAGGAGGGCTTTGCC
ATGCCCAACAAGCACTACCACGCCCATTGCAACAAGCCACAGCAGATTCG
CCTGCTCGAACAGACATGGATGATGAGGAGAGCACGGCAGACTTCACCGA
GGACATGATCGAGACGATGGCATCGGCCGCGGGCATGCATCTAATGCCCC
CCCTGGTTACTTTGTCCTTGAACGACGATGATGAGGAGGAAGAAAAGGGC
AAGCCGAAAGCATGCACGCAACAGCACCTCTGCCTACGGATTGACGAAGC
GGTCGAGGACGGCGACGACCATCTGCATGAATTTGACCCGACTGCACTTT
CTTCCTGCACTTCCCAAACGTCAAGAGCCAATAAATGCAAGGGCACGTGT
GGCACGCTGAAAAAATTGCGGCCGGTCCTGCTGCTTTTGGTGGTGGTAAC
GACGTTCCTTGTGAGCGGCAGCTACTTGGTAGTGCGGTACCGGGACAAGG
TGTTGGAAGCTTCAGAATACATTCGCCAGCAAGCCCCTCGTTCTGCCGTG
TACTATGCTTTGATTGTGGCTTTGTGGATAATCTTGTGCTTGCCTTCTAC
AATCATAGAGTTGCTGGGTGGGGCAATATTTTCGTACCCTGTGGCGTTGC
TGACGTTGACGGTGGGCAAGCAGCTTGGATGCACGATTGCCTTTCTGATT
GGGAAGGTCGTGGCGTCTAGAGCCATACGGGACACATTGGGTCGGCCGCA
TCGTGTGTCTTCCTCTACAATATTAGCGGCAGAGGGAAAGGGAGAGCGGA
GCAATACTACTATTGCGGTTGCTGGTAGTGATGAGCAGCAGAAAGCGTCT
CAGGGAAGACGACGCGGACGACAACCCGCCAGCGCCAGCGGCAGTGACAG
CAGCAGTACCAAGCGGGGCAGGTGGAGCAGCTCCAAACCTATGTCCAAGC
GAAAGCGGACGATACAAGCCATGTTCTACGCCATGGAATGCCATCCGTGG
AAGATCACGCTCCTCCTCCGCTTCCTCCCCATCCCAATCAGTGTCAAAAA
CTACGGCATGGCCTGCCTGCCTTGTCCGACACATGTATTTCTCATCTCCA
CCTTTGTTGCTTCCCTTCCTTTCACCTTCATTTGGGTCAACCTAGGGGAG
TCGACCAAGAGTTTGTTGGAGGCACTAAGTGGCAAGGGGGAATCCATGGG
AAAGCATGGGCTCTTCGCACAGGAGATCGCTTTACTGGTGGTGGGCCTGC
TGCTGCTGATACTGCTTGTGGTGATATTGAAACGATACACGCATCGATAC
GCGGCCGTTTTGGAGGCGGAGGAAACAGCACGTTTGGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCCGTAGCGGAGCAGGGGGCGGGGGGAGGGC
AGGATGGACATAGCACGGTAAGGAGTAATTTGACGCTGTCGTCGATACCG
ACATGGACATTGACAGAGGAGGAGGGCGGGGACGAGGGAGGAAGGGAGGA
AGGGGAGGAAGATGAGGATGCGCGGAGTTGCTTCGGGTGGCGAAGACATA
GTCGGGAGTCATTCGTCGAGAGGGAGATCGTGGAGGGACGTGGGATCGCG
GGAGGCGAGGTGTCATTGGTGGTGGTGCCTTCTCTGATGAAAGCAACAGA
GGAGACCATAAATGACAGGAAGAAGATGGGGAGGAGGGGGAGGAAGAGGA
GAAGGAGGAGGAAGAAGTGGTCGGAAGTCCTTCTTGTAGTGTGGCATCCG
TAGCTTAAGGTTTAAGGGACATTGAGTAAGATTGAGTGAGTGGTGTGATA
TTGAATGAGATGAAGTAAGTGAGGTTGAGTGTGTGAGATTGAGTAAGCTT
GAACAGAAGAGCAAAGAGTGTTGGGAATTCGAGGATCAGCAAGAGGAGGA
GAAGAAGCAGCAAAGGCGGGTGGGGGAAAGGGGGGGGCGAGAAGAGTACC
AAAGCATGAAGACATTGAACGTGGTTTGTGAGGGTGAAGATTCGAAGGAC
TAGATTGAGACAACAGAGAGAGAAGAGGTAAGAGATGACAGGGAGAAGAG
AGAAACGTGGATTGAGACAGCAGAGAGAGGAGAGGTGAGAACTAACAGGG
AGAAGAGAGAAACGGACGATGATGGTACGCTTAGCAGCTCAATAATGAGT
CGTCTTAACTGTACATCCAAATGAATTGATGGGGAGTAGATGCAGTAGTA
GATGCAGTAGTAGTAGCAGTAGTAGTAGCAGTAGTAGTAGTAGTAGTATC
AATAGTAGCAGTAGTAGTATCAATATTTGGAGTTGAATATGATGGTGAGT
TTCGCTTTGCACTGCATGTGGGTTTGTGTTGTGTATCTGTCTGTTTGTGT
CCTTCGGTGCGTGTGAGAAAATGAGCGGATATAAGTGCAAATTCATGTTA
AGATTGCACGCAAGCAATTACGGGGCAGTTAAAGCAATTATCATTCGTCA
GACTGCCATAATATACCTAGGCAGGCGTATCCAAATAACCATGTATATTG
GGAGAACAAGAACAAGGAGGAGAAGGAGGACGACGAGGAGAAGAAGAAGA
AGAAGGAGAAGGAGAAGGAGAAGAAGGAGATAAAGAAATATGAACATTGG
AATCGACG
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Coding sequence (CDS) from alignment at chr6:860339..862946+

>NO06G03020.1 ID=NO06G03020.1|Name=NO06G03020.1|organism=Nannochloropsis oceanica|type=CDS|length=1743bp|location=Sequence derived from alignment at chr6:860339..862946+ (Nannochloropsis oceanica)
ATGACAAGTCGACGGGTTGCGCCGTCAGGAGGGCTTTGCCATGCCCAACA
AGCACTACCACGCCCATTGCAACAAGCCACAGCAGATTCGCCTGCTCGAA
CAGACATGGATGATGAGGAGAGCACGGCAGACTTCACCGAGGACATGATC
GAGACGATGGCATCGGCCGCGGGCATGCATCTAATGCCCCCCCTGGTTAC
TTTGTCCTTGAACGACGATGATGAGGAGGAAGAAAAGGGCAAGCCGAAAG
CATGCACGCAACAGCACCTCTGCCTACGGATTGACGAAGCGGTCGAGGAC
GGCGACGACCATCTGCATGAATTTGACCCGACTGCACTTTCTTCCTGCAC
TTCCCAAACGTCAAGAGCCAATAAATGCAAGGGCACGTGTGGCACGCTGA
AAAAATTGCGGCCGGTCCTGCTGCTTTTGGTGGTGGTAACGACGTTCCTT
GTGAGCGGCAGCTACTTGGTAGTGCGGTACCGGGACAAGGTGTTGGAAGC
TTCAGAATACATTCGCCAGCAAGCCCCTCGTTCTGCCGTGTACTATGCTT
TGATTGTGGCTTTGTGGATAATCTTGTGCTTGCCTTCTACAATCATAGAG
TTGCTGGGTGGGGCAATATTTTCGTACCCTGTGGCGTTGCTGACGTTGAC
GGTGGGCAAGCAGCTTGGATGCACGATTGCCTTTCTGATTGGGAAGGTCG
TGGCGTCTAGAGCCATACGGGACACATTGGGTCGGCCGCATCGTGTGTCT
TCCTCTACAATATTAGCGGCAGAGGGAAAGGGAGAGCGGAGCAATACTAC
TATTGCGGTTGCTGGTAGTGATGAGCAGCAGAAAGCGTCTCAGGGAAGAC
GACGCGGACGACAACCCGCCAGCGCCAGCGGCAGTGACAGCAGCAGTACC
AAGCGGGGCAGGTGGAGCAGCTCCAAACCTATGTCCAAGCGAAAGCGGAC
GATACAAGCCATGTTCTACGCCATGGAATGCCATCCGTGGAAGATCACGC
TCCTCCTCCGCTTCCTCCCCATCCCAATCAGTGTCAAAAACTACGGCATG
GCCTGCCTGCCTTGTCCGACACATGTATTTCTCATCTCCACCTTTGTTGC
TTCCCTTCCTTTCACCTTCATTTGGGTCAACCTAGGGGAGTCGACCAAGA
GTTTGTTGGAGGCACTAAGTGGCAAGGGGGAATCCATGGGAAAGCATGGG
CTCTTCGCACAGGAGATCGCTTTACTGGTGGTGGGCCTGCTGCTGCTGAT
ACTGCTTGTGGTGATATTGAAACGATACACGCATCGATACGCGGCCGTTT
TGGAGGCGGAGGAAACAGCACGTTTGGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCCGTAGCGGAGCAGGGGGCGGGGGGAGGGCAGGATGGACA
TAGCACGGTAAGGAGTAATTTGACGCTGTCGTCGATACCGACATGGACAT
TGACAGAGGAGGAGGGCGGGGACGAGGGAGGAAGGGAGGAAGGGGAGGAA
GATGAGGATGCGCGGAGTTGCTTCGGGTGGCGAAGACATAGTCGGGAGTC
ATTCGTCGAGAGGGAGATCGTGGAGGGACGTGGGATCGCGGGAGGCGAGG
TGTCATTGGTGGTGGTGCCTTCTCTGATGAAAGCAACAGAGGAGACCATA
AATGACAGGAAGAAGATGGGGAGGAGGGGGAGGAAGAGGAGAAGGAGGAG
GAAGAAGTGGTCGGAAGTCCTTCTTGTAGTGTGGCATCCGTAG
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Synonyms
Publications