NO06G02860, NO06G02860 (gene) Nannochloropsis oceanica

Overview
NameNO06G02860
Unique NameNO06G02860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1457
Alignment locationchr6:820159..821615 -

Link to JBrowse

Properties
Property NameValue
DescriptionUbiquinone biosynthesis protein coq7
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:820159..821615 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009078Ferritin-like_SF
IPR011566Ubq_synth_Coq7
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0006744ubiquinone biosynthetic process
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0008152metabolic process
Homology
BLAST of NO06G02860 vs. NCBI_GenBank
Match: EWM26300.1 (ubiquinone biosynthesis protein coq7 [Nannochloropsis gaditana])

HSP 1 Score: 208.4 bits (529), Expect = 2.800e-50
Identity = 99/137 (72.26%), Postives = 116/137 (84.67%), Query Frame = 0
Query:  111 TPHAPPVFDWVALDEEKKMWSDYDNNYEAALVQDLRSNHAGETGAVWIYAGAKAAMKLGSPSRFSPGASAFVAEHYATEAEHLAHFDRLLDMQMKSKLLPLWRVSGWCLGFFPTLVGGEPALFLTVEAVETFVEEHY 248
            +P  PP FDW+ L+EEKK+W D+++N EA LVQDLRS+HAGETGAV+IYAGA+AAMK G   RFS  + AFV  H+ATE+EHLA+F+RLLD  MKSKLLP WR+SGWCLGFFPTL+GGE ALFLTVEAVETFVE HY
Sbjct:  105 SPPQPP-FDWIGLEEEKKIWGDFESNGEAVLVQDLRSDHAGETGAVYIYAGAQAAMKWGGGGRFSAESRAFVQTHHATESEHLAYFERLLDPGMKSKLLPFWRISGWCLGFFPTLLGGESALFLTVEAVETFVEAHY 240          
BLAST of NO06G02860 vs. NCBI_GenBank
Match: OYV68416.1 (ubiquinone biosynthesis protein COQ7 [Acidiphilium sp. 21-60-14] >OYV88960.1 ubiquinone biosynthesis protein COQ7 [Acidiphilium sp. 37-60-79] >OZB37938.1 ubiquinone biosynthesis protein COQ7 [Acidiphilium sp. 34-60-192])

HSP 1 Score: 103.6 bits (257), Expect = 9.700e-19
Identity = 56/107 (52.34%), Postives = 66/107 (61.68%), Query Frame = 0
Query:  141 LVQDLRSNHAGETGAVWIYAGAKAAMKLGSPSRFSPGASAFVAEHYATEAEHLAHFDRLLDMQMKSKLLPLWRVSGWCLGFFPTLVGGEPALFLTVEAVETFVEEHY 248
            LV DLRS+HAGETGAV IY G  A  +        P    F  EH A+E EHLA    LL    +S LLPLWRV+GW  GF P LVG   A++ T++AVETFV+ HY
Sbjct:   28 LVGDLRSDHAGETGAVAIYLGILAVSR-------DPKVRQFAQEHLASEREHLARMGELLPPGQRSVLLPLWRVAGWLTGFLPALVGPH-AVYATIDAVETFVDHHY 126          
BLAST of NO06G02860 vs. NCBI_GenBank
Match: XP_001749524.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ85575.1 predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 101.7 bits (252), Expect = 3.700e-18
Identity = 62/143 (43.36%), Postives = 81/143 (56.64%), Query Frame = 0
Query:  105 PSNPTLTPHAPPVFDWVALDEEKKMWSDYDNNYEAALVQDLRSNHAGETGAVWIYAGAKAAMKLGSPSRFSPGASAFVAEHYATEAEHLAHFDRLLDMQMKSKLLPLWRVSGWCLGFFPTLVGGEPALFLTVEAVETFVEEHY 248
            P+ P  TP      D+ A   E     D     +  LVQ LRS+HAGE  AV+IY GA+ A +L        G   FV +H  TE  HL +F+ LL+ + +S L P+W V+G+ LGF PTL G   AL+ T+ AVET+VEEHY
Sbjct:   44 PTRPLPTPFPVSPNDFAAAMAE----MDQVRREDPWLVQALRSDHAGELAAVYIYRGARDAARL---RPLPEGVHHFVNQHLETERGHLHYFETLLERRERSWLSPVWLVAGYALGFLPTLAGPH-ALYTTIHAVETYVEEHY 178          
BLAST of NO06G02860 vs. NCBI_GenBank
Match: WP_082901827.1 (demethoxyubiquinone hydroxylase family protein [Leptolyngbya valderiana])

HSP 1 Score: 100.9 bits (250), Expect = 6.300e-18
Identity = 52/104 (50.00%), Postives = 66/104 (63.46%), Query Frame = 0
Query:  144 DLRSNHAGETGAVWIYAGAKAAMKLGSPSRFSPGASAFVAEHYATEAEHLAHFDRLLDMQMKSKLLPLWRVSGWCLGFFPTLVGGEPALFLTVEAVETFVEEHY 248
            DLRS+ AGETGAVWIY G  +A +        P   +F   H +TEAEHL   D LL  + +S+LLPLWR++GW  G  P  +G + A F TV+AVETFV+ HY
Sbjct:   30 DLRSDQAGETGAVWIYRGMLSAAR-------DPVVRSFAERHLSTEAEHLRLIDGLLPRRARSRLLPLWRLAGWITGALPAALGAQ-AAFATVQAVETFVDRHY 125          
BLAST of NO06G02860 vs. NCBI_GenBank
Match: EEB78066.1 (hypothetical protein GPB2148_2698 [marine gamma proteobacterium HTCC2148])

HSP 1 Score: 100.1 bits (248), Expect = 1.100e-17
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 0
Query:  140 ALVQDLRSNHAGETGAVWIYAGAKAAMKLGSPSRFSPGASAFVAEHYATEAEHLAHFDRLLDMQMKSKLLPLWRVSGWCLGFFPTLVGGEPALFLTVEAVETFVEEHY 248
            A+ +DLRS+HAGETGAV+IY G  +  +             F  EH ATE  HL  F++ L   +KS+L+PLW+++GW LG   +L+GG   +FLT+EAVETFV  HY
Sbjct:   40 AVQRDLRSDHAGETGAVFIYRGILSCTR-------DSALREFATEHLATEQRHLVFFEQWLPASLKSRLIPLWKLAGWLLGAL-SLLGGRRGVFLTIEAVETFVVAHY 139          
BLAST of NO06G02860 vs. NCBI_GenBank
Match: OYV52807.1 (ubiquinone biosynthesis protein COQ7 [Rhodospirillales bacterium 20-60-12])

HSP 1 Score: 99.8 bits (247), Expect = 1.400e-17
Identity = 54/107 (50.47%), Postives = 65/107 (60.75%), Query Frame = 0
Query:  141 LVQDLRSNHAGETGAVWIYAGAKAAMKLGSPSRFSPGASAFVAEHYATEAEHLAHFDRLLDMQMKSKLLPLWRVSGWCLGFFPTLVGGEPALFLTVEAVETFVEEHY 248
            L+ D+RS+HAGETGAV IY G  A           P   AF   H ATE +HL   D LL    +S LLPLWRV+GW  GF PTL  G  A++ T++AVETFV+ HY
Sbjct:   20 LIGDIRSDHAGETGAVMIYRGILAGTA-------DPVLRAFAQTHMATEQKHLDLLDGLLRPDQRSLLLPLWRVAGWLTGFLPTL-AGSLAVYATIDAVETFVDHHY 118          
BLAST of NO06G02860 vs. NCBI_GenBank
Match: GAP38762.1 (hypothetical protein ISF6_5315 [Ideonella sakaiensis])

HSP 1 Score: 98.6 bits (244), Expect = 3.100e-17
Identity = 51/103 (49.51%), Postives = 64/103 (62.14%), Query Frame = 0
Query:  145 LRSNHAGETGAVWIYAGAKAAMKLGSPSRFSPGASAFVAEHYATEAEHLAHFDRLLDMQMKSKLLPLWRVSGWCLGFFPTLVGGEPALFLTVEAVETFVEEHY 248
            LR++HAGETGAV IY G  A  +        P   AF AEH ATEA HLA  D  +  + +S+LLP WR++GW  G  P L  G+ A+  TV+AVETFV+ HY
Sbjct:  126 LRTDHAGETGAVMIYRGVLAVTR-------DPALRAFAAEHLATEARHLAEMDATVPARWRSRLLPCWRLAGWLTGALPAL-AGQRAVHATVQAVETFVDRHY 220          
BLAST of NO06G02860 vs. NCBI_GenBank
Match: WP_054022606.1 (DUF393 domain-containing protein [Ideonella sakaiensis])

HSP 1 Score: 98.6 bits (244), Expect = 3.100e-17
Identity = 51/103 (49.51%), Postives = 64/103 (62.14%), Query Frame = 0
Query:  145 LRSNHAGETGAVWIYAGAKAAMKLGSPSRFSPGASAFVAEHYATEAEHLAHFDRLLDMQMKSKLLPLWRVSGWCLGFFPTLVGGEPALFLTVEAVETFVEEHY 248
            LR++HAGETGAV IY G  A  +        P   AF AEH ATEA HLA  D  +  + +S+LLP WR++GW  G  P L  G+ A+  TV+AVETFV+ HY
Sbjct:  145 LRTDHAGETGAVMIYRGVLAVTR-------DPALRAFAAEHLATEARHLAEMDATVPARWRSRLLPCWRLAGWLTGALPAL-AGQRAVHATVQAVETFVDRHY 239          
BLAST of NO06G02860 vs. NCBI_GenBank
Match: AKO54235.1 (conjugal transfer protein [Marinobacter psychrophilus])

HSP 1 Score: 98.2 bits (243), Expect = 4.100e-17
Identity = 52/105 (49.52%), Postives = 67/105 (63.81%), Query Frame = 0
Query:  143 QDLRSNHAGETGAVWIYAGAKAAMKLGSPSRFSPGASAFVAEHYATEAEHLAHFDRLLDMQMKSKLLPLWRVSGWCLGFFPTLVGGEPALFLTVEAVETFVEEHY 248
            Q+LR +HAGETGAVWIY G  AA   G+          F  EH  TE +HL  FD L     +S +LPLWR++G+  GF P+L+ G+ A+F T+EAVETFV+ HY
Sbjct:   20 QELRCSHAGETGAVWIYRGILAARPTGA-------LLEFAREHLQTEQQHLGMFDDLSVCYRRSLILPLWRLAGFLTGFLPSLI-GKNAVFATIEAVETFVDLHY 116          
BLAST of NO06G02860 vs. NCBI_GenBank
Match: WP_053076131.1 (conjugal transfer protein [Marinobacter psychrophilus])

HSP 1 Score: 98.2 bits (243), Expect = 4.100e-17
Identity = 52/105 (49.52%), Postives = 67/105 (63.81%), Query Frame = 0
Query:  143 QDLRSNHAGETGAVWIYAGAKAAMKLGSPSRFSPGASAFVAEHYATEAEHLAHFDRLLDMQMKSKLLPLWRVSGWCLGFFPTLVGGEPALFLTVEAVETFVEEHY 248
            Q+LR +HAGETGAVWIY G  AA   G+          F  EH  TE +HL  FD L     +S +LPLWR++G+  GF P+L+ G+ A+F T+EAVETFV+ HY
Sbjct:   25 QELRCSHAGETGAVWIYRGILAARPTGA-------LLEFAREHLQTEQQHLGMFDDLSVCYRRSLILPLWRLAGFLTGFLPSLI-GKNAVFATIEAVETFVDLHY 121          
The following BLAST results are available for this feature:
BLAST of NO06G02860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26300.12.800e-5072.26ubiquinone biosynthesis protein coq7 [Nannochlorop... [more]
OYV68416.19.700e-1952.34ubiquinone biosynthesis protein COQ7 [Acidiphilium... [more]
XP_001749524.13.700e-1843.36hypothetical protein [Monosiga brevicollis MX1] >E... [more]
WP_082901827.16.300e-1850.00demethoxyubiquinone hydroxylase family protein [Le... [more]
EEB78066.11.100e-1747.22hypothetical protein GPB2148_2698 [marine gamma pr... [more]
OYV52807.11.400e-1750.47ubiquinone biosynthesis protein COQ7 [Rhodospirill... [more]
GAP38762.13.100e-1749.51hypothetical protein ISF6_5315 [Ideonella sakaiens... [more]
WP_054022606.13.100e-1749.51DUF393 domain-containing protein [Ideonella sakaie... [more]
AKO54235.14.100e-1749.52conjugal transfer protein [Marinobacter psychrophi... [more]
WP_053076131.14.100e-1749.52conjugal transfer protein [Marinobacter psychrophi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000168NSK000168Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02860.2NO06G02860.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO06G02860.1NO06G02860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597488gene_6615Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100093g8gene4224Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02860.2NO06G02860.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO06G02860.1NO06G02860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02860 ID=NO06G02860|Name=NO06G02860|organism=Nannochloropsis oceanica|type=gene|length=1457bp
AACAGATTTCACATTAATCTGCTATCAGCGCCTCAACCAAACCAGTCCTC
ATCCACCCCTCAAGCTACACGTCATCGCCAACCCCGGGCTTGCATCAGCC
TAATTTGCCATGGCCCTGCCCCATGCGCTGTCTGTTTTCCAAAGAGGGAT
GGAAAGTCAAGCGATAAGACGCCACTTCATGGTCATCGTGCTTGGCGGCA
CCGACAACCGAATGCCTCCTCGTCTCAGCCCGAGGCATCTCATGACGGAG
CCGGCCCGTGTTCGGCCCAGCAGCCTCACTACCACCGCAGCAACACGCAT
CATGAGCGCCAAGTTCGCTGACGCCAGTCACGCCTCTTCCCTCCATGCCC
TTGTCATTCACGCACCACGTTTCTGCTTCTCCACCAGCACCAGCACCAGT
ACCAGCACAAGTACCACCGTCCCCTCAAACCCAACCCTTACTCCCCACGC
GCCGCCCGTATTTGATTGGGTCGCTTTGGACGAAGAGAAAAAGATGTGGA
GCGATTATGATAATAATTATGAGGCTGCGCTTGTGCAAGACCTGAGGAGT
AACCATGCGGGTGAGACAGGTGCGGTCTGGATCTATGCTGGTGCCAAGgt
atgtatcttacacatgagagaagacagtatcacttttttacggagggaat
gaagccaatttgcgtgcctattttttgcattctctttattttcctttttc
tctaatccataaacattctctctctctttctttctcacgcacgacccacc
cacccacatagGCTGCTATGAAATTAGGTTCTCCCTCTCGCTTCTCTCCG
GGGGCCAGCGCCTTCGTGGCCGAGCACTACGCCACCGAAGCTGAGCACCT
TGCACATTTCGACCGTCTGCTGGACATGCAAATGAAATCAAAGTTACTAC
CTCTCTGGAGAGTTAGTGGATGGTGTCTGGGATTTTTTCCCACGCTGGTA
GGAGGGGAGCCAGCCCTCTTTCTGACGGTTGAAGCAGTGGAAACCTTTGT
GGAGGAGCATTACATGgtatcaaaggagggaggaaggggcagagggaggg
aaacgtcacatgaatgctgcccatactgattgttgttccctccttttcct
tcgtttaaaaaaaacacatctatctatagGAGCAAATCTTTCCCTTGGAA
TGCAGCGGTCGATACCCAGAGCTTTTGAAATTATTGAGGCATTGCTGTGA
GGAGGAGGTGCATCACAAGGAGGACGCAGCGGCAAGGTGGATTTCAGGGG
GAGGGGGAGGAAAGGGGGGAGCAAGGCCCTGGTATGTACGAGTTTGGGCG
AAACTGGTTGGGTGGGGGAGTAAGGGCGCGGTGGCGGTGTGTAAAAGAAT
ATGAATATCTAGGCCAATAGATGGGCGGGTAAATTGAGCATGTGGCTGCG
TGGTAGAGATTGGCTGATTGTAGAAAGATACGAAAGAATGAATCACGGTG
TGACAAA
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protein sequence of NO06G02860.2

>NO06G02860.2-protein ID=NO06G02860.2-protein|Name=NO06G02860.2|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MALPHALSVFQRGMESQAIRRHFMVIVLGGTDNRMPPRLSPRHLMTEPAR
VRPSSLTTTAATRIMSAKFADASHASSLHALVIHAPRFCFSTSTSTSTST
STTVPSNPTLTPHAPPVFDWVALDEEKKMWSDYDNNYEAALVQDLRSNHA
GETGAVWIYAGAKAAMKLGSPSRFSPGASAFVAEHYATEAEHLAHFDRLL
DMQMKSKLLPLWRVSGWCLGFFPTLVGGEPALFLTVEAVETFVEEHYMVS
KEGGRGRGRETSHECCPY*
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protein sequence of NO06G02860.1

>NO06G02860.1-protein ID=NO06G02860.1-protein|Name=NO06G02860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MALPHALSVFQRGMESQAIRRHFMVIVLGGTDNRMPPRLSPRHLMTEPAR
VRPSSLTTTAATRIMSAKFADASHASSLHALVIHAPRFCFSTSTSTSTST
STTVPSNPTLTPHAPPVFDWVALDEEKKMWSDYDNNYEAALVQDLRSNHA
GETGAVWIYAGAKAAMKLGSPSRFSPGASAFVAEHYATEAEHLAHFDRLL
DMQMKSKLLPLWRVSGWCLGFFPTLVGGEPALFLTVEAVETFVEEHYMEQ
IFPLECSGRYPELLKLLRHCCEEEVHHKEDAAARWISGGGGGKGGARPWY
VRVWAKLVGWGSKGAVAVCKRI*
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Synonyms
Publications