NO06G02860.1, NO06G02860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02860.1
Unique NameNO06G02860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1181
Alignment locationchr6:820159..821615 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:820159..821615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02860.1 vs.
Match: EWM26300.1 (ubiquinone biosynthesis protein coq7 [Nannochloropsis gaditana])

HSP 1 Score: 313.5 bits (802), Expect = 7.400e-82
Identity = 150/223 (67.26%), Postives = 182/223 (81.61%), Query Frame = 0 
Query:  100 TSTTVPSNPTLTPHAPPVFDWVALDEEKKMWSDYDNNYEAALVQDLRSNHAGETGAVWIYAGAKAAMKLGSPSRFSPGASAFVAEHYATEAEHLAHFDRLLDMQMKSKLLPLWRVSGWCLGFFPTLVGGEPALFLTVEAVETFVEEHYMEQIFPLECSGRYPELLKLLRHCCEEEVHHKEDAAARWISGGGGGKGGARPWYVRVWAKLVGWGSKGAVAVCKRI 323
            T+ ++ + P+  P  P  FDW+ L+EEKK+W D+++N EA LVQDLRS+HAGETGAV+IYAGA+AAMK G   RFS  + AFV  H+ATE+EHLA+F+RLLD  MKSKLLP WR+SGWCLGFFPTL+GGE ALFLTVEAVETFVE HY EQI+PL+CSGR+PELLKLLRHCC+EEVHHKEDA ARW+ G G G+   RP   R+WA +VG GS+ AVAVC++I
Sbjct:   95 TAASLNARPSSPPQPP--FDWIGLEEEKKIWGDFESNGEAVLVQDLRSDHAGETGAVYIYAGAQAAMKWGGGGRFSAESRAFVQTHHATESEHLAYFERLLDPGMKSKLLPFWRISGWCLGFFPTLLGGESALFLTVEAVETFVEAHYQEQIYPLQCSGRFPELLKLLRHCCDEEVHHKEDAQARWLQGRGFGEVEDRPRLARLWAWVVGTGSRAAVAVCRKI 315
The following BLAST results are available for this feature:
BLAST of NO06G02860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26300.17.400e-8267.26ubiquinone biosynthesis protein coq7 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02860NO06G02860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02860.1NO06G02860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02860.1.cds1NO06G02860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02860.1.cds2NO06G02860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02860.1.cds3NO06G02860.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02860.1 ID=NO06G02860.1|Name=NO06G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1181bp
AACAGATTTCACATTAATCTGCTATCAGCGCCTCAACCAAACCAGTCCTC
ATCCACCCCTCAAGCTACACGTCATCGCCAACCCCGGGCTTGCATCAGCC
TAATTTGCCATGGCCCTGCCCCATGCGCTGTCTGTTTTCCAAAGAGGGAT
GGAAAGTCAAGCGATAAGACGCCACTTCATGGTCATCGTGCTTGGCGGCA
CCGACAACCGAATGCCTCCTCGTCTCAGCCCGAGGCATCTCATGACGGAG
CCGGCCCGTGTTCGGCCCAGCAGCCTCACTACCACCGCAGCAACACGCAT
CATGAGCGCCAAGTTCGCTGACGCCAGTCACGCCTCTTCCCTCCATGCCC
TTGTCATTCACGCACCACGTTTCTGCTTCTCCACCAGCACCAGCACCAGT
ACCAGCACAAGTACCACCGTCCCCTCAAACCCAACCCTTACTCCCCACGC
GCCGCCCGTATTTGATTGGGTCGCTTTGGACGAAGAGAAAAAGATGTGGA
GCGATTATGATAATAATTATGAGGCTGCGCTTGTGCAAGACCTGAGGAGT
AACCATGCGGGTGAGACAGGTGCGGTCTGGATCTATGCTGGTGCCAAGGC
TGCTATGAAATTAGGTTCTCCCTCTCGCTTCTCTCCGGGGGCCAGCGCCT
TCGTGGCCGAGCACTACGCCACCGAAGCTGAGCACCTTGCACATTTCGAC
CGTCTGCTGGACATGCAAATGAAATCAAAGTTACTACCTCTCTGGAGAGT
TAGTGGATGGTGTCTGGGATTTTTTCCCACGCTGGTAGGAGGGGAGCCAG
CCCTCTTTCTGACGGTTGAAGCAGTGGAAACCTTTGTGGAGGAGCATTAC
ATGGAGCAAATCTTTCCCTTGGAATGCAGCGGTCGATACCCAGAGCTTTT
GAAATTATTGAGGCATTGCTGTGAGGAGGAGGTGCATCACAAGGAGGACG
CAGCGGCAAGGTGGATTTCAGGGGGAGGGGGAGGAAAGGGGGGAGCAAGG
CCCTGGTATGTACGAGTTTGGGCGAAACTGGTTGGGTGGGGGAGTAAGGG
CGCGGTGGCGGTGTGTAAAAGAATATGAATATCTAGGCCAATAGATGGGC
GGGTAAATTGAGCATGTGGCTGCGTGGTAGAGATTGGCTGATTGTAGAAA
GATACGAAAGAATGAATCACGGTGTGACAAA
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protein sequence of NO06G02860.1

>NO06G02860.1-protein ID=NO06G02860.1-protein|Name=NO06G02860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MALPHALSVFQRGMESQAIRRHFMVIVLGGTDNRMPPRLSPRHLMTEPAR
VRPSSLTTTAATRIMSAKFADASHASSLHALVIHAPRFCFSTSTSTSTST
STTVPSNPTLTPHAPPVFDWVALDEEKKMWSDYDNNYEAALVQDLRSNHA
GETGAVWIYAGAKAAMKLGSPSRFSPGASAFVAEHYATEAEHLAHFDRLL
DMQMKSKLLPLWRVSGWCLGFFPTLVGGEPALFLTVEAVETFVEEHYMEQ
IFPLECSGRYPELLKLLRHCCEEEVHHKEDAAARWISGGGGGKGGARPWY
VRVWAKLVGWGSKGAVAVCKRI*
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mRNA from alignment at chr6:820159..821615-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02860.1 ID=NO06G02860.1|Name=NO06G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp|location=Sequence derived from alignment at chr6:820159..821615- (Nannochloropsis oceanica)
AACAGATTTCACATTAATCTGCTATCAGCGCCTCAACCAAACCAGTCCTC
ATCCACCCCTCAAGCTACACGTCATCGCCAACCCCGGGCTTGCATCAGCC
TAATTTGCCATGGCCCTGCCCCATGCGCTGTCTGTTTTCCAAAGAGGGAT
GGAAAGTCAAGCGATAAGACGCCACTTCATGGTCATCGTGCTTGGCGGCA
CCGACAACCGAATGCCTCCTCGTCTCAGCCCGAGGCATCTCATGACGGAG
CCGGCCCGTGTTCGGCCCAGCAGCCTCACTACCACCGCAGCAACACGCAT
CATGAGCGCCAAGTTCGCTGACGCCAGTCACGCCTCTTCCCTCCATGCCC
TTGTCATTCACGCACCACGTTTCTGCTTCTCCACCAGCACCAGCACCAGT
ACCAGCACAAGTACCACCGTCCCCTCAAACCCAACCCTTACTCCCCACGC
GCCGCCCGTATTTGATTGGGTCGCTTTGGACGAAGAGAAAAAGATGTGGA
GCGATTATGATAATAATTATGAGGCTGCGCTTGTGCAAGACCTGAGGAGT
AACCATGCGGGTGAGACAGGTGCGGTCTGGATCTATGCTGGTGCCAAGGT
ATGTATCTTACACATGAGAGAAGACAGTATCACTTTTTTACGGAGGGAAT
GAAGCCAATTTGCGTGCCTATTTTTTGCATTCTCTTTATTTTCCTTTTTC
TCTAATCCATAAACATTCTCTCTCTCTTTCTTTCTCACGCACGACCCACC
CACCCACATAGGCTGCTATGAAATTAGGTTCTCCCTCTCGCTTCTCTCCG
GGGGCCAGCGCCTTCGTGGCCGAGCACTACGCCACCGAAGCTGAGCACCT
TGCACATTTCGACCGTCTGCTGGACATGCAAATGAAATCAAAGTTACTAC
CTCTCTGGAGAGTTAGTGGATGGTGTCTGGGATTTTTTCCCACGCTGGTA
GGAGGGGAGCCAGCCCTCTTTCTGACGGTTGAAGCAGTGGAAACCTTTGT
GGAGGAGCATTACATGGTATCAAAGGAGGGAGGAAGGGGCAGAGGGAGGG
AAACGTCACATGAATGCTGCCCATACTGATTGTTGTTCCCTCCTTTTCCT
TCGTTTAAAAAAAACACATCTATCTATAGGAGCAAATCTTTCCCTTGGAA
TGCAGCGGTCGATACCCAGAGCTTTTGAAATTATTGAGGCATTGCTGTGA
GGAGGAGGTGCATCACAAGGAGGACGCAGCGGCAAGGTGGATTTCAGGGG
GAGGGGGAGGAAAGGGGGGAGCAAGGCCCTGGTATGTACGAGTTTGGGCG
AAACTGGTTGGGTGGGGGAGTAAGGGCGCGGTGGCGGTGTGTAAAAGAAT
ATGAATATCTAGGCCAATAGATGGGCGGGTAAATTGAGCATGTGGCTGCG
TGGTAGAGATTGGCTGATTGTAGAAAGATACGAAAGAATGAATCACGGTG
TGACAAA
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Coding sequence (CDS) from alignment at chr6:820159..821615-

>NO06G02860.1 ID=NO06G02860.1|Name=NO06G02860.1|organism=Nannochloropsis oceanica|type=CDS|length=969bp|location=Sequence derived from alignment at chr6:820159..821615- (Nannochloropsis oceanica)
ATGGCCCTGCCCCATGCGCTGTCTGTTTTCCAAAGAGGGATGGAAAGTCA
AGCGATAAGACGCCACTTCATGGTCATCGTGCTTGGCGGCACCGACAACC
GAATGCCTCCTCGTCTCAGCCCGAGGCATCTCATGACGGAGCCGGCCCGT
GTTCGGCCCAGCAGCCTCACTACCACCGCAGCAACACGCATCATGAGCGC
CAAGTTCGCTGACGCCAGTCACGCCTCTTCCCTCCATGCCCTTGTCATTC
ACGCACCACGTTTCTGCTTCTCCACCAGCACCAGCACCAGTACCAGCACA
AGTACCACCGTCCCCTCAAACCCAACCCTTACTCCCCACGCGCCGCCCGT
ATTTGATTGGGTCGCTTTGGACGAAGAGAAAAAGATGTGGAGCGATTATG
ATAATAATTATGAGGCTGCGCTTGTGCAAGACCTGAGGAGTAACCATGCG
GGTGAGACAGGTGCGGTCTGGATCTATGCTGGTGCCAAGGCTGCTATGAA
ATTAGGTTCTCCCTCTCGCTTCTCTCCGGGGGCCAGCGCCTTCGTGGCCG
AGCACTACGCCACCGAAGCTGAGCACCTTGCACATTTCGACCGTCTGCTG
GACATGCAAATGAAATCAAAGTTACTACCTCTCTGGAGAGTTAGTGGATG
GTGTCTGGGATTTTTTCCCACGCTGGTAGGAGGGGAGCCAGCCCTCTTTC
TGACGGTTGAAGCAGTGGAAACCTTTGTGGAGGAGCATTACATGGAGCAA
ATCTTTCCCTTGGAATGCAGCGGTCGATACCCAGAGCTTTTGAAATTATT
GAGGCATTGCTGTGAGGAGGAGGTGCATCACAAGGAGGACGCAGCGGCAA
GGTGGATTTCAGGGGGAGGGGGAGGAAAGGGGGGAGCAAGGCCCTGGTAT
GTACGAGTTTGGGCGAAACTGGTTGGGTGGGGGAGTAAGGGCGCGGTGGC
GGTGTGTAAAAGAATATGA
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Synonyms
Publications