NO06G02500, NO06G02500 (gene) Nannochloropsis oceanica

Overview
NameNO06G02500
Unique NameNO06G02500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1521
Alignment locationchr6:702217..703737 +

Link to JBrowse

Properties
Property NameValue
DescriptionAlkylated dna repair protein alkb-like protein
Mutants
The following records are associated with this feature:
TitleMethodAccession dateLast modified date
NO06G02500 knockout mutantCRISPR/Cas2023-12-182023-12-18
NO06G02500-knockout mutants of N.oceanica IMET1CRISPR/Cas2024-03-252024-03-25
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:702217..703737 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR005123Oxoglu/Fe-dep_dioxygenase
IPR004574Alkb
IPR027450AlkB-like
Homology
BLAST of NO06G02500 vs. NCBI_GenBank
Match: EWM26266.1 (alkylated dna repair protein alkb-like protein [Nannochloropsis gaditana])

HSP 1 Score: 419.9 bits (1078), Expect = 1.200e-113
Identity = 246/478 (51.46%), Postives = 297/478 (62.13%), Query Frame = 0
Query:   45 CSKEANRYKSPASGEQDNSAYRRAEKQYRRQSVAVNRRRTRFVRQDPDLGEAVDFVREGVEDDPRVRLVTVMEDGRRIYALRNRPGFYYVHGALDWRKQVYWARCCLRELSRSPFTNITNNHAEINNALGHDKEI---SSGGSLWQQAVLRAEKD--EGGG--DGE-------LLQAVQDLHALRWANVGLNYLWTTRQYAASAVKDEIXXXXXXXXXXKEGPSMEDEGQEDQDGRKEGKGVQ---------VRDTRKDK---DSLPFASTSHYQRQDSFPIPPALTELARDILTLVARADSHHLEEKEETRFGAAAPASPLPPPQAAQAEAFQAEAGIVNYYPPESSMGGHVDDAEGALEVPLVSFSLGLGGVFLMGGRSKEVEPVPIVFRSGDCMVMGGEARLCFHGVPCVLMESARPDERLVNWKALSEVGGREGGRGKRPKCTETEDRLLAHYLASSRVNFNVRQVWRRRGWEG 497
            CSKEANRYK     E+D++AYRRAEKQYRRQ V VN+RR RFVR+DPDL  A+DF + G   D RV L+  +E GR IY++R+RPGFYY+ GAL W+ QV WAR CL E SRSPFTNIT NH  +      D E    S   +LW  AV R E +  EGG   DGE       L QA+QDL+ALRWAN+G NY+WTTR+YA   VK+            +EG ++ D G      R E  G Q         VR+  + K   + +     + +   D  P+P ALT+LAR++L  +A A+SH     +  R      A PLP         F+ EAGIVNYYPPESSMGGHVDDAEGA  VPLVSFSLGLG VFL+GG+ KEV PVP+VFRSGDCMVM GEARL FHGVPC+L ESA PD  L  W  ++ V   + G  +       E R+L+HYL SSR+NFNVRQVWRR   EG
Sbjct:    6 CSKEANRYKVSHLEERDDTAYRRAEKQYRRQRVPVNKRRNRFVRRDPDLAHAIDFAKRGSRMDQRVLLLETVEGGREIYSVRDRPGFYYIRGALTWQAQVRWARRCLTEFSRSPFTNIT-NHIRLALRPARDMECPHQSGQEALWDAAVRRVESEGWEGGDEEDGEEKRTGQALQQALQDLYALRWANLGANYIWTTRKYAV-PVKEAAKEETGRGGGLREGETVRDSGGPHATNRDEEGGAQGTPSSVHSRVRNLHEGKVGAEEVGLPERAAFPPSDGLPVPQALTDLAREVLEDIAHAESHRPCASKGER------AFPLP-------MNFRGEAGIVNYYPPESSMGGHVDDAEGATSVPLVSFSLGLGCVFLLGGKDKEVAPVPLVFRSGDCMVMAGEARLAFHGVPCILEESAGPDPALGQWTRVAAVLREDDGASR-----AAEARMLSHYLTSSRLNFNVRQVWRRELCEG 463          
BLAST of NO06G02500 vs. NCBI_GenBank
Match: XP_015894297.1 (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB-like [Ziziphus jujuba] >XP_015900888.1 PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB-like isoform X2 [Ziziphus jujuba])

HSP 1 Score: 138.7 bits (348), Expect = 5.200e-29
Identity = 126/464 (27.16%), Postives = 195/464 (42.03%), Query Frame = 0
Query:   57 SGEQDNSAYRRAEKQYRRQSVAVNRRRTRFVRQDPDLGEAVDF--VREGVEDD---PRVRLVTVMEDGRRIYALRNRPGFYYVHGALDWRKQVYWARCCLRELSRSPFTNITNNHA---EINN---ALGHDKEISSGGSLWQQAVLRAEKDEGGGDGEL--------------------LQAVQDLHALRWANVGLNYLWTTRQYAASAVKDEIXXXXXXXXXXKEGPSMEDEGQEDQDGRKEGKGVQVRDTRKDKDSLPFASTSHYQRQDSFPIPPALTELARDILTLVARADSHHLEEKEETRFGAAAPASPLPPPQAAQAEAFQAEAGIVNYYPPESSMGGHVDDAEGALEVPLVSFSLGLGGVFLMGGRSKEVEPVPIVFRSGDCMVMGGEARLCFHGVPCVLMESARPDERLVNWKALSEVGGREGGRGKRPKCTETEDRLLAHYLASSRVNFNVRQVW 490
            S + + +A+RRAEK+Y+      ++++ +   +  DL E +DF  + E   ++   P    V   + GR ++++ NRPGFY++ GAL+ ++Q  W +  L    + P  N TN++A    IN+   A    K +   G+    A L +  +   GDG++                    + A   L  LRW+ +GL + W+ R Y  S   ++                                                             IP AL ELA+ +                      AAPA PL        E F+ EA IVNY+    S+GGH+DD E     P+VS SLG   +FL+GG+SKE  P+ +  RSGD ++M GEAR CFHGVP           R+   K  +E+   E       + +  +D     Y+ +SR+N N+RQV+
Sbjct:    8 SDDSERTAFRRAEKKYKLYYDPASKKKKQ--PKKVDLSEVLDFKSILESYNENSELPNGFNVLRCDSGRPVFSMENRPGFYFIPGALNIQEQCEWIKESLTSFPQPP--NRTNHNAFYGPINDLFLAATEKKILVEEGN--SPASLNSGCNVSPGDGDVQRWKFFKEDVVSSRGNTRKSISASVLLRKLRWSTLGLQFDWSKRNYNVSLPHNK-------------------------------------------------------------IPTALGELAKRM----------------------AAPAMPL-------GEGFKPEAAIVNYFGLGDSLGGHLDDMEADWSKPIVSISLGCKAIFLLGGKSKEDPPLAMFLRSGDVVLMAGEARECFHGVP-----------RIFTAKENAEIAALE------LQLSHEDDHYFLEYIQTSRININIRQVY 358          
BLAST of NO06G02500 vs. NCBI_GenBank
Match: XP_015900887.1 (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 138.7 bits (348), Expect = 5.200e-29
Identity = 126/464 (27.16%), Postives = 195/464 (42.03%), Query Frame = 0
Query:   57 SGEQDNSAYRRAEKQYRRQSVAVNRRRTRFVRQDPDLGEAVDF--VREGVEDD---PRVRLVTVMEDGRRIYALRNRPGFYYVHGALDWRKQVYWARCCLRELSRSPFTNITNNHA---EINN---ALGHDKEISSGGSLWQQAVLRAEKDEGGGDGEL--------------------LQAVQDLHALRWANVGLNYLWTTRQYAASAVKDEIXXXXXXXXXXKEGPSMEDEGQEDQDGRKEGKGVQVRDTRKDKDSLPFASTSHYQRQDSFPIPPALTELARDILTLVARADSHHLEEKEETRFGAAAPASPLPPPQAAQAEAFQAEAGIVNYYPPESSMGGHVDDAEGALEVPLVSFSLGLGGVFLMGGRSKEVEPVPIVFRSGDCMVMGGEARLCFHGVPCVLMESARPDERLVNWKALSEVGGREGGRGKRPKCTETEDRLLAHYLASSRVNFNVRQVW 490
            S + + +A+RRAEK+Y+      ++++ +   +  DL E +DF  + E   ++   P    V   + GR ++++ NRPGFY++ GAL+ ++Q  W +  L    + P  N TN++A    IN+   A    K +   G+    A L +  +   GDG++                    + A   L  LRW+ +GL + W+ R Y  S   ++                                                             IP AL ELA+ +                      AAPA PL        E F+ EA IVNY+    S+GGH+DD E     P+VS SLG   +FL+GG+SKE  P+ +  RSGD ++M GEAR CFHGVP           R+   K  +E+   E       + +  +D     Y+ +SR+N N+RQV+
Sbjct:    8 SDDSERTAFRRAEKKYKLYYDPASKKKKQ--PKKVDLSEVLDFKSILESYNENSELPNGFNVLRCDSGRPVFSMENRPGFYFIPGALNIQEQCEWIKESLTSFPQPP--NRTNHNAFYGPINDLFLAATEKKILVEEGN--SPASLNSGCNVSPGDGDVQRWKFFKEDVVSSRGNTRKSISASVLLRKLRWSTLGLQFDWSKRNYDVSLPHNK-------------------------------------------------------------IPTALGELAKRM----------------------AAPAMPL-------GEGFKPEAAIVNYFGLGDSLGGHLDDMEADWSKPIVSISLGCKAIFLLGGKSKEDPPLAMFLRSGDVVLMAGEARECFHGVP-----------RIFTAKENAEIAALE------LQLSHEDDHYFLEYIQTSRININIRQVY 358          
BLAST of NO06G02500 vs. NCBI_GenBank
Match: XP_009405524.1 (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 137.5 bits (345), Expect = 1.100e-28
Identity = 126/463 (27.21%), Postives = 180/463 (38.88%), Query Frame = 0
Query:   52 YKSPASG-EQDNSAYRRAEKQYRRQSVAVNRRRTRFVRQDPDLGEAVDF--VREGVEDD----PRVRLVTVMEDGRRIYALRNRPGFYYVHGALDWRKQVYWARCCLRELSRSP---------------FTNITNN----HAEINNALGHDKEISSGGSLWQQAVLRAEKDEGGGDGELLQAVQDLHALRWANVGLNYLWTTRQYAASAVKDEIXXXXXXXXXXKEGPSMEDEGQEDQDGRKEGKGVQVRDTRKDKDSLPFASTSHYQRQDSFPIPPALTELARDILTLVARADSHHLEEKEETRFGAAAPASPLPPPQAAQAEAFQAEAGIVNYYPPESSMGGHVDDAEGALEVPLVSFSLGLGGVFLMGGRSKEVEPVPIVFRSGDCMVMGGEARLCFHGVPCVLMESARPDERLVNWKALSEVGGREGGRGKRPKCTETEDRLLAHYLASSRVNFNVRQV 489
            Y   ASG E + +A+RRAEK+Y+       R R + V    DL + +DF  V E  E D      +           I+ L++RPGFY++  AL   +Q YW R  L    + P                T + N      AE +N    D  + +   ++ +  L A   EG    + + A   L  LRW+ +GL + W+ R Y  S   ++                                                             IP  L  LA+ +                               P  +  E FQ EA IVNY+ P   +GGH+DD E     P+VS SLG   +FL+GG+S+E  PV +  RSGD ++M G+AR CFHGVP + ++    DE   N   LS+  G              +DR    Y+ SSR+N N+RQV
Sbjct:    2 YGVEASGAETERTAFRRAEKRYKLYKSQPTRSRKQPVVNRTDLSDVIDFLAVLESFERDGGTPEGIYRFECPGFALPIFCLKDRPGFYFIPCALTIEEQCYWIRQSLISFPQPPNRTNHTAIYGPISYLLTAVQNKKILVEAENSNVSLVDNNMLAPRYIFSETSLDAHV-EGHDSCKSVSASVLLRKLRWSTLGLQFDWSKRNYDVSLPHNK-------------------------------------------------------------IPNDLCLLAKKMAV-----------------------------PAMSSGEEFQPEAAIVNYFGPSDMLGGHLDDMEADWSKPIVSISLGCKAIFLLGGKSREDMPVSMFLRSGDIILMAGQARECFHGVPRIFID----DEHAENSDLLSQFSGE-------------DDRCFMDYIKSSRININIRQV 356          
BLAST of NO06G02500 vs. NCBI_GenBank
Match: XP_015900889.1 (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 135.6 bits (340), Expect = 4.400e-28
Identity = 124/464 (26.72%), Postives = 194/464 (41.81%), Query Frame = 0
Query:   57 SGEQDNSAYRRAEKQYRRQSVAVNRRRTRFVRQDPDLGEAVDF--VREGVEDD---PRVRLVTVMEDGRRIYALRNRPGFYYVHGALDWRKQVYWARCCLRELSRSPFTNITNNHA---EINN---ALGHDKEISSGGSLWQQAVLRAEKDEGGGDGEL--------------------LQAVQDLHALRWANVGLNYLWTTRQYAASAVKDEIXXXXXXXXXXKEGPSMEDEGQEDQDGRKEGKGVQVRDTRKDKDSLPFASTSHYQRQDSFPIPPALTELARDILTLVARADSHHLEEKEETRFGAAAPASPLPPPQAAQAEAFQAEAGIVNYYPPESSMGGHVDDAEGALEVPLVSFSLGLGGVFLMGGRSKEVEPVPIVFRSGDCMVMGGEARLCFHGVPCVLMESARPDERLVNWKALSEVGGREGGRGKRPKCTETEDRLLAHYLASSRVNFNVRQVW 490
            S + + +A+RRAEK+Y+      ++++ +   +  DL E +DF  + E   ++   P    V   + GR ++++ NRPGFY++ GAL+ ++Q  W +  L    + P  N TN++A    IN+   A    K +   G+    A L +  +   GDG++                    + A   L  LRW+ +GL + W+ R Y  S   ++                                                             IP AL ELA+ +                      AAPA PL        E F+ EA IVNY+     +GGH+DD E     P+VS SLG   +FL+GG+S+E  P+ +  RSGD ++M GEAR CFHGVP           R+   K  +E+   E       + +  +D     Y+ +SR+N N+RQV+
Sbjct:    8 SDDSERTAFRRAEKKYKLYYDPASKKKKQ--PKKVDLSEVLDFKSILESYNENSELPNGFNVLRCDSGRPVFSMENRPGFYFIPGALNIQEQCEWIKESLTSFPQPP--NRTNHNAFYGPINDLFLAATEKKILVEEGN--SPASLNSGCNVSPGDGDVQRWKFFKEDVVSSRGNTRKSISASVLLRKLRWSTLGLQFDWSKRNYDVSLPHNK-------------------------------------------------------------IPTALGELAKRM----------------------AAPAMPL-------GEGFKPEAAIVNYFGLGDCLGGHLDDMEADWSKPIVSISLGCKAIFLLGGKSREDPPLAMFLRSGDVVLMAGEARECFHGVP-----------RIFTAKENAEIAALE------LQLSHEDDHYFLEYIQTSRININIRQVY 358          
BLAST of NO06G02500 vs. NCBI_GenBank
Match: PUZ44896.1 (hypothetical protein GQ55_8G171500 [Panicum hallii var. hallii])

HSP 1 Score: 133.7 bits (335), Expect = 1.700e-27
Identity = 127/466 (27.25%), Postives = 187/466 (40.13%), Query Frame = 0
Query:   55 PASGEQDNSAYRRAEKQYRRQSVAVNRRRTRFVRQDP--------DLGEAVDF---VREGVEDDPRVRLVTVMEDGRRIYALRNRPGFYYVHGALDWRKQVYWARCCLRELSRSP-FTNITNNHAEINNALGHDKEISSGGSLWQQAVLRAEKDEGGG-----------DGEL--------LQAVQDLHALRWANVGLNYLWTTRQYAASAVKDEIXXXXXXXXXXKEGPSMEDEGQEDQDGRKEGKGVQVRDTRKDKDSLPFASTSHYQRQDSFPIPPALTELARDILTLVARADSHHLEEKEETRFGAAAPASPLPPPQAAQAEAFQAEAGIVNYYPPESSMGGHVDDAEGALEVPLVSFSLGLGGVFLMGGRSKEVEPVPIVFRSGDCMVMGGEARLCFHGVPCVLMESARPDERLVNWKALSEVGGREGGRGKRPKCTETEDRLLAHYLASSRVNFNVRQVW 490
            PA+ E+  +A+RRAEKQY+       + R+R  R  P        DL   VDF   +    E    +         R ++   +R GFY++ GAL   +Q YW R  L+   + P  TN+T  +  I++ L   K       +    V   E+++G G           D E+         +A+  +  LRW+ +GL + W+ R Y                                                    SLP              IP AL  LA+++                      A PA P         E F+ EA IVNYY P   +GGHVDD E     P+VS SLG   +FL+GG++++  P  +  RSGD ++M GEAR CFHGVP +  ES        N + +S +  +  G          +D  + HY+ +SR+N N+RQV+
Sbjct:    7 PAAAER--TAFRRAEKQYKLYKPPNLKGRSR-SRSKPAGVDGDGGDLSAVVDFHALLAADGELPAGIGRRDCAGFDRPVFCFLDRSGFYFIPGALSTEEQCYWIRESLKTFPQPPNRTNLTAIYGSISDLLTAAKNQKILVEVENSDVEEKEQNKGDGKTEAKNFKFVEDSEIQKGEECRTTRAITLMRKLRWSTLGLQFDWSKRNYDV--------------------------------------------------SLPHKK-----------IPDALASLAKNM----------------------AIPAMPF-------GEEFKPEAAIVNYYGPSDMLGGHVDDMEADWTKPIVSISLGCKCIFLLGGKTRDEVPTAMFLRSGDIVLMAGEARECFHGVPRIFTES--------NQQEISALVSQLSGE---------DDCFILHYVKNSRININIRQVY 362          
BLAST of NO06G02500 vs. NCBI_GenBank
Match: PAN42548.1 (hypothetical protein PAHAL_H02391 [Panicum hallii] >PAN42549.1 hypothetical protein PAHAL_H02391 [Panicum hallii] >PAN42558.1 hypothetical protein PAHAL_H02391 [Panicum hallii])

HSP 1 Score: 133.3 bits (334), Expect = 2.200e-27
Identity = 125/466 (26.82%), Postives = 185/466 (39.70%), Query Frame = 0
Query:   55 PASGEQDNSAYRRAEKQYRRQSVAVNRRRTRFVRQDP--------DLGEAVDF---VREGVEDDPRVRLVTVMEDGRRIYALRNRPGFYYVHGALDWRKQVYWARCCLRELSRSP---------------FTNITNNH--AEINNALGHDKEISSGGSLWQQAVLRAEKD---EGGGDGELLQAVQDLHALRWANVGLNYLWTTRQYAASAVKDEIXXXXXXXXXXKEGPSMEDEGQEDQDGRKEGKGVQVRDTRKDKDSLPFASTSHYQRQDSFPIPPALTELARDILTLVARADSHHLEEKEETRFGAAAPASPLPPPQAAQAEAFQAEAGIVNYYPPESSMGGHVDDAEGALEVPLVSFSLGLGGVFLMGGRSKEVEPVPIVFRSGDCMVMGGEARLCFHGVPCVLMESARPDERLVNWKALSEVGGREGGRGKRPKCTETEDRLLAHYLASSRVNFNVRQVW 490
            PA+ E+  +A+RRAEKQY+       + R+R  R  P        DL   VDF   +    E    +         R ++   +R GFY++ GAL   +Q YW R  L+   + P               FT   N     E+ N+   +KE + G    +    +  +D   + G +    +A+  +  LRW+ +GL + W+ R Y                                                    SLP              IP AL  LA+++                      A PA P         E F+ EA IVNYY P   +GGHVDD E     P+VS SLG   +FL+GG++++  P  +  RSGD ++M GEAR CFHGVP +  ES        N + +S +  +  G          +D  + HY+ +SR+N N+RQV+
Sbjct:    7 PAAAER--TAFRRAEKQYKLYKPPNLKGRSR-SRSKPAGVDGDGGDLSAVVDFHALLAADGELPAGIGRRDCAGFDRPVFCFLDRSGFYFIPGALSTEEQCYWIRESLKTFPQPPNRTNLTAIYGSISDLFTAAKNQKILVEVENSDVEEKEQNKGDRKTESKNFKFVEDSEIQKGEECRTTRAITLMRKLRWSTLGLQFDWSKRNYDV--------------------------------------------------SLPHKK-----------IPDALASLAKNM----------------------AIPAMPF-------GEEFKPEAAIVNYYGPSDMLGGHVDDMEADWTKPIVSISLGCKCIFLLGGKTRDEVPTAMFLRSGDIVLMAGEARECFHGVPRIFTES--------NQQEISALVSQLSGE---------DDCFILHYVKNSRININIRQVY 362          
BLAST of NO06G02500 vs. NCBI_GenBank
Match: PNR39724.1 (hypothetical protein PHYPA_020003 [Physcomitrella patens])

HSP 1 Score: 132.9 bits (333), Expect = 2.800e-27
Identity = 123/453 (27.15%), Postives = 200/453 (44.15%), Query Frame = 0
Query:   52 YKSPASGEQDNSAYRRAEKQYRRQ---SVAVNRRRTRFVRQDP--DLGEAVDFVREGVEDDPRVRLVTVME-DGRRIYALRNRPGFYYVHGALDWRKQVYWARCCLRELSRSPFTNITNNHAEINNALGHDKEISSGGSLWQQAVLRAEKDEGGGDGELLQAVQDLHALRWANVGLNYLWTTRQYAASAVKDEIXXXXXXXXXXKEGPSMEDEGQEDQDGRKEGKGVQVRDTRKDKDSLPFASTSHYQRQDSFPIPPALTELARDILTLVARADSHHLEEKEETRFGAAAPASPLPP----------PQAAQAEAFQAEAGIVNYYPPESSMGGHVDDAEGALEVPLVSFSLGLGGVFLMGGRSKEVEPVPIVFRSGDCMVMGGEARLCFHGVPCVLMESARPDERLVNWKALSEVGGREGGRGKRPKCTETEDRLLAHYLASSRVNFNVRQV 489
            Y     G    +A+R  EK Y+R    S A +R +     Q P  D+ + +DF + G + +  +  V+ +E  G  +Y +   PGFY++  AL+  +Q+YWA  CL    + P  N TN++A           I++  + +Q+  +  E   G  + +L+    +  ++         +  + +   + V D+I           E     D G     G   G   + RD   D     F  TS            A T  +  ++  +  A      +  +  +  A P   +PP            A + E F+AEA IVN+Y P+  +GGHVDD E  +  P+VS SLG   +FL+GG +++  P  +  RSGD ++M G AR CFHGVP +  E+   +  L ++ ++S+V G              + R +  YL SSR+N N+RQV
Sbjct:    3 YADAQEGAFSRTAFRSTEKAYKRYTHVSSAKSRNQHSRRAQVPATDVSKVLDFKKLGEDGEYNIEGVSRVEGSGWPVYTIDKHPGFYFIPEALNKAEQLYWATECLTTFPQPP--NRTNHNAMYG-------PIANLWAAFQENKILVEVASGKQERDLISNSAETRSVD------EKISDSIESVRAEVSDDITVV--------EKNRFHDNGITTSGG-DGGNSWEFRDCSTD-----FLKTS-----------SAKTVSSETLVRKLRWATVGIQFDWSKRAYNEALPFQEIPPKLADLARRLAKPAMENEDFKAEAAIVNFYGPDDMLGGHVDDMEADMSKPIVSISLGCKAIFLLGGTTRDEPPAAMFVRSGDVVLMAGPARHCFHGVPRIFSEA--KESELPDFTSMSDVDG-------------IQPRSIVKYLESSRINVNIRQV 400          
BLAST of NO06G02500 vs. NCBI_GenBank
Match: XP_024396772.1 (alpha-ketoglutarate-dependent dioxygenase alkB-like isoform X2 [Physcomitrella patens])

HSP 1 Score: 132.9 bits (333), Expect = 2.800e-27
Identity = 123/453 (27.15%), Postives = 200/453 (44.15%), Query Frame = 0
Query:   52 YKSPASGEQDNSAYRRAEKQYRRQ---SVAVNRRRTRFVRQDP--DLGEAVDFVREGVEDDPRVRLVTVME-DGRRIYALRNRPGFYYVHGALDWRKQVYWARCCLRELSRSPFTNITNNHAEINNALGHDKEISSGGSLWQQAVLRAEKDEGGGDGELLQAVQDLHALRWANVGLNYLWTTRQYAASAVKDEIXXXXXXXXXXKEGPSMEDEGQEDQDGRKEGKGVQVRDTRKDKDSLPFASTSHYQRQDSFPIPPALTELARDILTLVARADSHHLEEKEETRFGAAAPASPLPP----------PQAAQAEAFQAEAGIVNYYPPESSMGGHVDDAEGALEVPLVSFSLGLGGVFLMGGRSKEVEPVPIVFRSGDCMVMGGEARLCFHGVPCVLMESARPDERLVNWKALSEVGGREGGRGKRPKCTETEDRLLAHYLASSRVNFNVRQV 489
            Y     G    +A+R  EK Y+R    S A +R +     Q P  D+ + +DF + G + +  +  V+ +E  G  +Y +   PGFY++  AL+  +Q+YWA  CL    + P  N TN++A           I++  + +Q+  +  E   G  + +L+    +  ++         +  + +   + V D+I           E     D G     G   G   + RD   D     F  TS            A T  +  ++  +  A      +  +  +  A P   +PP            A + E F+AEA IVN+Y P+  +GGHVDD E  +  P+VS SLG   +FL+GG +++  P  +  RSGD ++M G AR CFHGVP +  E+   +  L ++ ++S+V G              + R +  YL SSR+N N+RQV
Sbjct:   20 YADAQEGAFSRTAFRSTEKAYKRYTHVSSAKSRNQHSRRAQVPATDVSKVLDFKKLGEDGEYNIEGVSRVEGSGWPVYTIDKHPGFYFIPEALNKAEQLYWATECLTTFPQPP--NRTNHNAMYG-------PIANLWAAFQENKILVEVASGKQERDLISNSAETRSVD------EKISDSIESVRAEVSDDITVV--------EKNRFHDNGITTSGG-DGGNSWEFRDCSTD-----FLKTS-----------SAKTVSSETLVRKLRWATVGIQFDWSKRAYNEALPFQEIPPKLADLARRLAKPAMENEDFKAEAAIVNFYGPDDMLGGHVDDMEADMSKPIVSISLGCKAIFLLGGTTRDEPPAAMFVRSGDVVLMAGPARHCFHGVPRIFSEA--KESELPDFTSMSDVDG-------------IQPRSIVKYLESSRINVNIRQV 417          
BLAST of NO06G02500 vs. NCBI_GenBank
Match: XP_024396771.1 (alpha-ketoglutarate-dependent dioxygenase alkB-like isoform X1 [Physcomitrella patens])

HSP 1 Score: 132.9 bits (333), Expect = 2.800e-27
Identity = 123/453 (27.15%), Postives = 200/453 (44.15%), Query Frame = 0
Query:   52 YKSPASGEQDNSAYRRAEKQYRRQ---SVAVNRRRTRFVRQDP--DLGEAVDFVREGVEDDPRVRLVTVME-DGRRIYALRNRPGFYYVHGALDWRKQVYWARCCLRELSRSPFTNITNNHAEINNALGHDKEISSGGSLWQQAVLRAEKDEGGGDGELLQAVQDLHALRWANVGLNYLWTTRQYAASAVKDEIXXXXXXXXXXKEGPSMEDEGQEDQDGRKEGKGVQVRDTRKDKDSLPFASTSHYQRQDSFPIPPALTELARDILTLVARADSHHLEEKEETRFGAAAPASPLPP----------PQAAQAEAFQAEAGIVNYYPPESSMGGHVDDAEGALEVPLVSFSLGLGGVFLMGGRSKEVEPVPIVFRSGDCMVMGGEARLCFHGVPCVLMESARPDERLVNWKALSEVGGREGGRGKRPKCTETEDRLLAHYLASSRVNFNVRQV 489
            Y     G    +A+R  EK Y+R    S A +R +     Q P  D+ + +DF + G + +  +  V+ +E  G  +Y +   PGFY++  AL+  +Q+YWA  CL    + P  N TN++A           I++  + +Q+  +  E   G  + +L+    +  ++         +  + +   + V D+I           E     D G     G   G   + RD   D     F  TS            A T  +  ++  +  A      +  +  +  A P   +PP            A + E F+AEA IVN+Y P+  +GGHVDD E  +  P+VS SLG   +FL+GG +++  P  +  RSGD ++M G AR CFHGVP +  E+   +  L ++ ++S+V G              + R +  YL SSR+N N+RQV
Sbjct:   32 YADAQEGAFSRTAFRSTEKAYKRYTHVSSAKSRNQHSRRAQVPATDVSKVLDFKKLGEDGEYNIEGVSRVEGSGWPVYTIDKHPGFYFIPEALNKAEQLYWATECLTTFPQPP--NRTNHNAMYG-------PIANLWAAFQENKILVEVASGKQERDLISNSAETRSVD------EKISDSIESVRAEVSDDITVV--------EKNRFHDNGITTSGG-DGGNSWEFRDCSTD-----FLKTS-----------SAKTVSSETLVRKLRWATVGIQFDWSKRAYNEALPFQEIPPKLADLARRLAKPAMENEDFKAEAAIVNFYGPDDMLGGHVDDMEADMSKPIVSISLGCKAIFLLGGTTRDEPPAAMFVRSGDVVLMAGPARHCFHGVPRIFSEA--KESELPDFTSMSDVDG-------------IQPRSIVKYLESSRINVNIRQV 429          
The following BLAST results are available for this feature:
BLAST of NO06G02500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26266.11.200e-11351.46alkylated dna repair protein alkb-like protein [Na... [more]
XP_015894297.15.200e-2927.16PREDICTED: alpha-ketoglutarate-dependent dioxygena... [more]
XP_015900887.15.200e-2927.16PREDICTED: alpha-ketoglutarate-dependent dioxygena... [more]
XP_009405524.11.100e-2827.21PREDICTED: alpha-ketoglutarate-dependent dioxygena... [more]
XP_015900889.14.400e-2826.72PREDICTED: alpha-ketoglutarate-dependent dioxygena... [more]
PUZ44896.11.700e-2727.25hypothetical protein GQ55_8G171500 [Panicum hallii... [more]
PAN42548.12.200e-2726.82hypothetical protein PAHAL_H02391 [Panicum hallii]... [more]
PNR39724.12.800e-2727.15hypothetical protein PHYPA_020003 [Physcomitrella ... [more]
XP_024396772.12.800e-2727.15alpha-ketoglutarate-dependent dioxygenase alkB-lik... [more]
XP_024396771.12.800e-2727.15alpha-ketoglutarate-dependent dioxygenase alkB-lik... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000210NSK000210Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02500.1NO06G02500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651535gene_6568Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100145g9gene4260Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02500.1NO06G02500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02500 ID=NO06G02500|Name=NO06G02500|organism=Nannochloropsis oceanica|type=gene|length=1521bp
ATGGACGCACCATTACCTAGGCAACAAGGCTACAATGTTGATGCAACTCA
GGATGGCCTCCCAGCGTCGAAGACCACCTCTGCATTGCCGTCTGCCGCAC
CGTTACCGCCAGCGCCTCCTCGACCTCCCATGTGCAGCAAGGAAGCGAAC
CGCTACAAGTCGCCCGCCAGTGGGGAACAAGACAATTCCGCCTATCGGCG
CGCGGAGAAGCAGTACAGACGCCAAAGCGTGGCTGTCAATAGGCGCCGAA
CTCGCTTTGTGCGGCAGGACCCTGATCTCGGGGAGGCTGTTGATTTTGTC
AGGGAAGGCGTGGAGGACGACCCACGTGTGCGCCTCGTGACGGTAATGGA
GGATGGACGTCGCATCTATGCGTTGCGAAATCGTCCGGGCTTTTACTACG
TGCATGGTGCTTTGGACTGGCGAAAGCAAGTGTATTGGGCGCGTTGCTGT
TTGAGAGAGTTGAGTAGGTCGCCTTTCACCAATATCACCAACAATCATGC
GGAGATAAACAACGCTCTGGGCCACGACAAAGAGATCAGCAGCGGTGGTA
GCTTGTGGCAACAAGCTGTGCTAAGGGCAGAAAAAGATGAAGGGGGAGGA
GATGGGGAGTTGTTGCAGGCGGTGCAAGATTTGCATGCTCTGCGATGGGC
TAATGTTGGTCTAAATTATCTTTGGACGACGCGTCAATACGCAGCATCCG
CAGTCAAGGACGAGATCAAGGACGAGGACAAAGAACACAATAAGGACAAA
GAAGGTCCTAGTATGGAGGACGAGGGGCAAGAGGACCAGGACGGCAGAAA
GGAGGGGAAGGGCGTTCAAGTGCGTGACACTCGCAAGGACAAGGACAGCC
TTCCTTTCGCTTCGACAAGCCATTACCAGCGTCAAGACTCGTTTCCGATT
CCTCCAGCGTTGACAGAACTAGCGCGGGACATTCTAACTCTGGTGGCTCG
CGCGGATAGTCACCACTTGGAGGAAAAGGAGGAGACTCGATTTGGAGCGG
CAGCACCAGCATCACCATTGCCACCACCACAAGCAGCACAAGCAGAGGCA
TTTCAGGCAGAGGCCGGAATTGTGAATTACTACCCCCCCGAAAGCAGCAT
GGGTGGGCATGTGGACGACGCAGAGGGGGCTTTGGAGGTACCTCTTGTCT
CGTTCAGCTTGGGGTTGGGTGGTGTGTTTCTGATGGGAGGCAGGAGCAAG
GAGGTGGAGCCGGTGCCGATCGTTTTTCGGAGTGGGGATTGCATGGTCAT
GGGAGGGGAGGCGCGCTTGTGTTTTCATGGAGTGCCATGTGTGTTGATGG
AGAGTGCTCGGCCAGACGAGCGGCTTGTAAATTGGAAAGCGTTGTCTGAG
GTGGGAGGTAGAGAGGGAGGAAGAGGGAAGAGGCCGAAGTGTACCGAGAC
GGAGGATCGATTGTTGGCGCATTATTTGGCATCGTCGCGGGTGAACTTCA
ATGTGAGGCAGGTTTGGAGGAGGAGGGGGTGGGAGGGACGGGCCTCGACG
ACTGCAGCACACCAGCAATAG
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protein sequence of NO06G02500.1

>NO06G02500.1-protein ID=NO06G02500.1-protein|Name=NO06G02500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=507bp
MDAPLPRQQGYNVDATQDGLPASKTTSALPSAAPLPPAPPRPPMCSKEAN
RYKSPASGEQDNSAYRRAEKQYRRQSVAVNRRRTRFVRQDPDLGEAVDFV
REGVEDDPRVRLVTVMEDGRRIYALRNRPGFYYVHGALDWRKQVYWARCC
LRELSRSPFTNITNNHAEINNALGHDKEISSGGSLWQQAVLRAEKDEGGG
DGELLQAVQDLHALRWANVGLNYLWTTRQYAASAVKDEIKDEDKEHNKDK
EGPSMEDEGQEDQDGRKEGKGVQVRDTRKDKDSLPFASTSHYQRQDSFPI
PPALTELARDILTLVARADSHHLEEKEETRFGAAAPASPLPPPQAAQAEA
FQAEAGIVNYYPPESSMGGHVDDAEGALEVPLVSFSLGLGGVFLMGGRSK
EVEPVPIVFRSGDCMVMGGEARLCFHGVPCVLMESARPDERLVNWKALSE
VGGREGGRGKRPKCTETEDRLLAHYLASSRVNFNVRQVWRRRGWEGRAST
TAAHQQ*
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Synonyms
Publications