NO06G02500.1, NO06G02500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02500.1
Unique NameNO06G02500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1521
Alignment locationchr6:702217..703737 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:702217..703737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02500.1 vs.
Match: EWM26266.1 (alkylated dna repair protein alkb-like protein [Nannochloropsis gaditana])

HSP 1 Score: 421.8 bits (1083), Expect = 3.000e-114
Identity = 250/481 (51.98%), Postives = 302/481 (62.79%), Query Frame = 0 
Query:   42 PPMCSKEANRYKSPASGEQDNSAYRRAEKQYRRQSVAVNRRRTRFVRQDPDLGEAVDFVREGVEDDPRVRLVTVMEDGRRIYALRNRPGFYYVHGALDWRKQVYWARCCLRELSRSPFTNITNNHAEINNALGHDKEI---SSGGSLWQQAVLRAEKD--EGGG--DGE-------LLQAVQDLHALRWANVGLNYLWTTRQYAASAVKDEIKDEDKEHNKDKEGPSMEDEGQEDQDGRKEGKGVQ---------VRDTRKDK---DSLPFASTSHYQRQDSFPIPPALTELARDILTLVARADSHHLEEKEETRFGAAAPASPLPPPQAAQAEAFQAEAGIVNYYPPESSMGGHVDDAEGALEVPLVSFSLGLGGVFLMGGRSKEVEPVPIVFRSGDCMVMGGEARLCFHGVPCVLMESARPDERLVNWKALSEVGGREGGRGKRPKCTETEDRLLAHYLASSRVNFNVRQVWRRRGWEG 497
            PP CSKEANRYK     E+D++AYRRAEKQYRRQ V VN+RR RFVR+DPDL  A+DF + G   D RV L+  +E GR IY++R+RPGFYY+ GAL W+ QV WAR CL E SRSPFTNIT NH  +      D E    S   +LW  AV R E +  EGG   DGE       L QA+QDL+ALRWAN+G NY+WTTR+YA   VK+  K+E       +EG ++ D G      R E  G Q         VR+  + K   + +     + +   D  P+P ALT+LAR++L  +A A+SH     +  R      A PLP         F+ EAGIVNYYPPESSMGGHVDDAEGA  VPLVSFSLGLG VFL+GG+ KEV PVP+VFRSGDCMVM GEARL FHGVPC+L ESA PD  L  W  ++ V   + G  +       E R+L+HYL SSR+NFNVRQVWRR   EG
Sbjct:    3 PPTCSKEANRYKVSHLEERDDTAYRRAEKQYRRQRVPVNKRRNRFVRRDPDLAHAIDFAKRGSRMDQRVLLLETVEGGREIYSVRDRPGFYYIRGALTWQAQVRWARRCLTEFSRSPFTNIT-NHIRLALRPARDMECPHQSGQEALWDAAVRRVESEGWEGGDEEDGEEKRTGQALQQALQDLYALRWANLGANYIWTTRKYAV-PVKEAAKEETGRGGGLREGETVRDSGGPHATNRDEEGGAQGTPSSVHSRVRNLHEGKVGAEEVGLPERAAFPPSDGLPVPQALTDLAREVLEDIAHAESHRPCASKGER------AFPLP-------MNFRGEAGIVNYYPPESSMGGHVDDAEGATSVPLVSFSLGLGCVFLLGGKDKEVAPVPLVFRSGDCMVMAGEARLAFHGVPCILEESAGPDPALGQWTRVAAVLREDDGASR-----AAEARMLSHYLTSSRLNFNVRQVWRRELCEG 463
The following BLAST results are available for this feature:
BLAST of NO06G02500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26266.13.000e-11451.98alkylated dna repair protein alkb-like protein [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02500NO06G02500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02500.1NO06G02500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02500.1.cds1NO06G02500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02500.1 ID=NO06G02500.1|Name=NO06G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1521bp
ATGGACGCACCATTACCTAGGCAACAAGGCTACAATGTTGATGCAACTCA
GGATGGCCTCCCAGCGTCGAAGACCACCTCTGCATTGCCGTCTGCCGCAC
CGTTACCGCCAGCGCCTCCTCGACCTCCCATGTGCAGCAAGGAAGCGAAC
CGCTACAAGTCGCCCGCCAGTGGGGAACAAGACAATTCCGCCTATCGGCG
CGCGGAGAAGCAGTACAGACGCCAAAGCGTGGCTGTCAATAGGCGCCGAA
CTCGCTTTGTGCGGCAGGACCCTGATCTCGGGGAGGCTGTTGATTTTGTC
AGGGAAGGCGTGGAGGACGACCCACGTGTGCGCCTCGTGACGGTAATGGA
GGATGGACGTCGCATCTATGCGTTGCGAAATCGTCCGGGCTTTTACTACG
TGCATGGTGCTTTGGACTGGCGAAAGCAAGTGTATTGGGCGCGTTGCTGT
TTGAGAGAGTTGAGTAGGTCGCCTTTCACCAATATCACCAACAATCATGC
GGAGATAAACAACGCTCTGGGCCACGACAAAGAGATCAGCAGCGGTGGTA
GCTTGTGGCAACAAGCTGTGCTAAGGGCAGAAAAAGATGAAGGGGGAGGA
GATGGGGAGTTGTTGCAGGCGGTGCAAGATTTGCATGCTCTGCGATGGGC
TAATGTTGGTCTAAATTATCTTTGGACGACGCGTCAATACGCAGCATCCG
CAGTCAAGGACGAGATCAAGGACGAGGACAAAGAACACAATAAGGACAAA
GAAGGTCCTAGTATGGAGGACGAGGGGCAAGAGGACCAGGACGGCAGAAA
GGAGGGGAAGGGCGTTCAAGTGCGTGACACTCGCAAGGACAAGGACAGCC
TTCCTTTCGCTTCGACAAGCCATTACCAGCGTCAAGACTCGTTTCCGATT
CCTCCAGCGTTGACAGAACTAGCGCGGGACATTCTAACTCTGGTGGCTCG
CGCGGATAGTCACCACTTGGAGGAAAAGGAGGAGACTCGATTTGGAGCGG
CAGCACCAGCATCACCATTGCCACCACCACAAGCAGCACAAGCAGAGGCA
TTTCAGGCAGAGGCCGGAATTGTGAATTACTACCCCCCCGAAAGCAGCAT
GGGTGGGCATGTGGACGACGCAGAGGGGGCTTTGGAGGTACCTCTTGTCT
CGTTCAGCTTGGGGTTGGGTGGTGTGTTTCTGATGGGAGGCAGGAGCAAG
GAGGTGGAGCCGGTGCCGATCGTTTTTCGGAGTGGGGATTGCATGGTCAT
GGGAGGGGAGGCGCGCTTGTGTTTTCATGGAGTGCCATGTGTGTTGATGG
AGAGTGCTCGGCCAGACGAGCGGCTTGTAAATTGGAAAGCGTTGTCTGAG
GTGGGAGGTAGAGAGGGAGGAAGAGGGAAGAGGCCGAAGTGTACCGAGAC
GGAGGATCGATTGTTGGCGCATTATTTGGCATCGTCGCGGGTGAACTTCA
ATGTGAGGCAGGTTTGGAGGAGGAGGGGGTGGGAGGGACGGGCCTCGACG
ACTGCAGCACACCAGCAATAG
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protein sequence of NO06G02500.1

>NO06G02500.1-protein ID=NO06G02500.1-protein|Name=NO06G02500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=507bp
MDAPLPRQQGYNVDATQDGLPASKTTSALPSAAPLPPAPPRPPMCSKEAN
RYKSPASGEQDNSAYRRAEKQYRRQSVAVNRRRTRFVRQDPDLGEAVDFV
REGVEDDPRVRLVTVMEDGRRIYALRNRPGFYYVHGALDWRKQVYWARCC
LRELSRSPFTNITNNHAEINNALGHDKEISSGGSLWQQAVLRAEKDEGGG
DGELLQAVQDLHALRWANVGLNYLWTTRQYAASAVKDEIKDEDKEHNKDK
EGPSMEDEGQEDQDGRKEGKGVQVRDTRKDKDSLPFASTSHYQRQDSFPI
PPALTELARDILTLVARADSHHLEEKEETRFGAAAPASPLPPPQAAQAEA
FQAEAGIVNYYPPESSMGGHVDDAEGALEVPLVSFSLGLGGVFLMGGRSK
EVEPVPIVFRSGDCMVMGGEARLCFHGVPCVLMESARPDERLVNWKALSE
VGGREGGRGKRPKCTETEDRLLAHYLASSRVNFNVRQVWRRRGWEGRAST
TAAHQQ*
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mRNA from alignment at chr6:702217..703737+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02500.1 ID=NO06G02500.1|Name=NO06G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1521bp|location=Sequence derived from alignment at chr6:702217..703737+ (Nannochloropsis oceanica)
ATGGACGCACCATTACCTAGGCAACAAGGCTACAATGTTGATGCAACTCA
GGATGGCCTCCCAGCGTCGAAGACCACCTCTGCATTGCCGTCTGCCGCAC
CGTTACCGCCAGCGCCTCCTCGACCTCCCATGTGCAGCAAGGAAGCGAAC
CGCTACAAGTCGCCCGCCAGTGGGGAACAAGACAATTCCGCCTATCGGCG
CGCGGAGAAGCAGTACAGACGCCAAAGCGTGGCTGTCAATAGGCGCCGAA
CTCGCTTTGTGCGGCAGGACCCTGATCTCGGGGAGGCTGTTGATTTTGTC
AGGGAAGGCGTGGAGGACGACCCACGTGTGCGCCTCGTGACGGTAATGGA
GGATGGACGTCGCATCTATGCGTTGCGAAATCGTCCGGGCTTTTACTACG
TGCATGGTGCTTTGGACTGGCGAAAGCAAGTGTATTGGGCGCGTTGCTGT
TTGAGAGAGTTGAGTAGGTCGCCTTTCACCAATATCACCAACAATCATGC
GGAGATAAACAACGCTCTGGGCCACGACAAAGAGATCAGCAGCGGTGGTA
GCTTGTGGCAACAAGCTGTGCTAAGGGCAGAAAAAGATGAAGGGGGAGGA
GATGGGGAGTTGTTGCAGGCGGTGCAAGATTTGCATGCTCTGCGATGGGC
TAATGTTGGTCTAAATTATCTTTGGACGACGCGTCAATACGCAGCATCCG
CAGTCAAGGACGAGATCAAGGACGAGGACAAAGAACACAATAAGGACAAA
GAAGGTCCTAGTATGGAGGACGAGGGGCAAGAGGACCAGGACGGCAGAAA
GGAGGGGAAGGGCGTTCAAGTGCGTGACACTCGCAAGGACAAGGACAGCC
TTCCTTTCGCTTCGACAAGCCATTACCAGCGTCAAGACTCGTTTCCGATT
CCTCCAGCGTTGACAGAACTAGCGCGGGACATTCTAACTCTGGTGGCTCG
CGCGGATAGTCACCACTTGGAGGAAAAGGAGGAGACTCGATTTGGAGCGG
CAGCACCAGCATCACCATTGCCACCACCACAAGCAGCACAAGCAGAGGCA
TTTCAGGCAGAGGCCGGAATTGTGAATTACTACCCCCCCGAAAGCAGCAT
GGGTGGGCATGTGGACGACGCAGAGGGGGCTTTGGAGGTACCTCTTGTCT
CGTTCAGCTTGGGGTTGGGTGGTGTGTTTCTGATGGGAGGCAGGAGCAAG
GAGGTGGAGCCGGTGCCGATCGTTTTTCGGAGTGGGGATTGCATGGTCAT
GGGAGGGGAGGCGCGCTTGTGTTTTCATGGAGTGCCATGTGTGTTGATGG
AGAGTGCTCGGCCAGACGAGCGGCTTGTAAATTGGAAAGCGTTGTCTGAG
GTGGGAGGTAGAGAGGGAGGAAGAGGGAAGAGGCCGAAGTGTACCGAGAC
GGAGGATCGATTGTTGGCGCATTATTTGGCATCGTCGCGGGTGAACTTCA
ATGTGAGGCAGGTTTGGAGGAGGAGGGGGTGGGAGGGACGGGCCTCGACG
ACTGCAGCACACCAGCAATAG
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Coding sequence (CDS) from alignment at chr6:702217..703737+

>NO06G02500.1 ID=NO06G02500.1|Name=NO06G02500.1|organism=Nannochloropsis oceanica|type=CDS|length=1521bp|location=Sequence derived from alignment at chr6:702217..703737+ (Nannochloropsis oceanica)
ATGGACGCACCATTACCTAGGCAACAAGGCTACAATGTTGATGCAACTCA
GGATGGCCTCCCAGCGTCGAAGACCACCTCTGCATTGCCGTCTGCCGCAC
CGTTACCGCCAGCGCCTCCTCGACCTCCCATGTGCAGCAAGGAAGCGAAC
CGCTACAAGTCGCCCGCCAGTGGGGAACAAGACAATTCCGCCTATCGGCG
CGCGGAGAAGCAGTACAGACGCCAAAGCGTGGCTGTCAATAGGCGCCGAA
CTCGCTTTGTGCGGCAGGACCCTGATCTCGGGGAGGCTGTTGATTTTGTC
AGGGAAGGCGTGGAGGACGACCCACGTGTGCGCCTCGTGACGGTAATGGA
GGATGGACGTCGCATCTATGCGTTGCGAAATCGTCCGGGCTTTTACTACG
TGCATGGTGCTTTGGACTGGCGAAAGCAAGTGTATTGGGCGCGTTGCTGT
TTGAGAGAGTTGAGTAGGTCGCCTTTCACCAATATCACCAACAATCATGC
GGAGATAAACAACGCTCTGGGCCACGACAAAGAGATCAGCAGCGGTGGTA
GCTTGTGGCAACAAGCTGTGCTAAGGGCAGAAAAAGATGAAGGGGGAGGA
GATGGGGAGTTGTTGCAGGCGGTGCAAGATTTGCATGCTCTGCGATGGGC
TAATGTTGGTCTAAATTATCTTTGGACGACGCGTCAATACGCAGCATCCG
CAGTCAAGGACGAGATCAAGGACGAGGACAAAGAACACAATAAGGACAAA
GAAGGTCCTAGTATGGAGGACGAGGGGCAAGAGGACCAGGACGGCAGAAA
GGAGGGGAAGGGCGTTCAAGTGCGTGACACTCGCAAGGACAAGGACAGCC
TTCCTTTCGCTTCGACAAGCCATTACCAGCGTCAAGACTCGTTTCCGATT
CCTCCAGCGTTGACAGAACTAGCGCGGGACATTCTAACTCTGGTGGCTCG
CGCGGATAGTCACCACTTGGAGGAAAAGGAGGAGACTCGATTTGGAGCGG
CAGCACCAGCATCACCATTGCCACCACCACAAGCAGCACAAGCAGAGGCA
TTTCAGGCAGAGGCCGGAATTGTGAATTACTACCCCCCCGAAAGCAGCAT
GGGTGGGCATGTGGACGACGCAGAGGGGGCTTTGGAGGTACCTCTTGTCT
CGTTCAGCTTGGGGTTGGGTGGTGTGTTTCTGATGGGAGGCAGGAGCAAG
GAGGTGGAGCCGGTGCCGATCGTTTTTCGGAGTGGGGATTGCATGGTCAT
GGGAGGGGAGGCGCGCTTGTGTTTTCATGGAGTGCCATGTGTGTTGATGG
AGAGTGCTCGGCCAGACGAGCGGCTTGTAAATTGGAAAGCGTTGTCTGAG
GTGGGAGGTAGAGAGGGAGGAAGAGGGAAGAGGCCGAAGTGTACCGAGAC
GGAGGATCGATTGTTGGCGCATTATTTGGCATCGTCGCGGGTGAACTTCA
ATGTGAGGCAGGTTTGGAGGAGGAGGGGGTGGGAGGGACGGGCCTCGACG
ACTGCAGCACACCAGCAATAG
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Synonyms
Publications