NO06G02320, NO06G02320 (gene) Nannochloropsis oceanica

Overview
NameNO06G02320
Unique NameNO06G02320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length825
Alignment locationchr6:672071..672895 -

Link to JBrowse

Properties
Property NameValue
DescriptionSuppressor enhancer of lin-12 protein 9
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:672071..672895 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036598GOLD_dom_sf
IPR015720TMP21-related
IPR009038GOLD
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO06G02320 vs. NCBI_GenBank
Match: EWM26200.1 (suppressor enhancer of lin-12 protein 9 [Nannochloropsis gaditana])

HSP 1 Score: 369.0 bits (946), Expect = 1.300e-98
Identity = 194/257 (75.49%), Postives = 214/257 (83.27%), Query Frame = 0
Query:   22 LPS-THAVSLDVPPRDKICLYQYYEAGDTGTAEVFIVNGGNLDIGVSVEGPFADDKDGAPSMTTQETKVLYNAVVASSSAFLNQEHPTGVTASADGLEITWPAKPGAYALCLDNTMSQLQTKLVEFSFPA-PEGKGDGHEDDFDLDAALA--GTDNADNGTIPDNIRQSYKADLALLKHSADRIARTLGDVQQKQQKERHRLALQTAANQNNHHKMVVSSMFETVVFIGVSLFQLFWVRRWFEGRGLRVSSRSREWA 275
            +PS  H +SL+VPPRDK+CLYQYY+ G+TG AEVF+VNGGNLDIGVSVEGPF DD  G PS TTQETK +Y+A+VASSSAFLNQ HP GVTASADG+EI+WPA+PGAYALCLDNTMS +QTK++EFSFPA  EG G    DDFDLDAALA          TI +NI+QSYKADLALLK SA RI RTL DVQ KQ KERHRLALQTAANQ NH KMVVSS+FETVVFI VSLFQLFWVRRWFEGRGLR  +RSREWA
Sbjct:   23 IPSPAHPLSLEVPPRDKVCLYQYYDVGETGKAEVFVVNGGNLDIGVSVEGPFTDDVHGTPSKTTQETKTVYDAIVASSSAFLNQLHPAGVTASADGIEISWPAQPGAYALCLDNTMSHVQTKVIEFSFPASKEGAG---TDDFDLDAALAXXXXXXXXXXTILENIKQSYKADLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEGRGLR--ARSREWA 274          
BLAST of NO06G02320 vs. NCBI_GenBank
Match: XP_009035203.1 (hypothetical protein AURANDRAFT_62671 [Aureococcus anophagefferens] >EGB10403.1 hypothetical protein AURANDRAFT_62671 [Aureococcus anophagefferens])

HSP 1 Score: 104.8 bits (260), Expect = 4.500e-19
Identity = 77/241 (31.95%), Postives = 123/241 (51.04%), Query Frame = 0
Query:   30 LDVPPRDKICLYQYYEAGDTGTAEVFIVNGGNLDIGVSVEGPF-ADDKDGAPSMTTQETKVLYNAVVASSSAFLNQEHPTGVT-ASADGLEITWPAKPGA---YALCLDNTMSQLQTKLVEFSFPAPEG-KGDGHEDDFDLDAALAGTDNADNGTIPDNIRQSYKADLALLKHSADRIARTLGDVQQKQQKERHRLALQTAANQNNHHKMVVSSMFETVVFIGVSLFQLFWVRRWFEGRGL 265
            L + P++K C+Y+  EA  + + EVF+++GGNLD+ V+++GPF   ++ G P    +  +   + +    SA L +   +G   A+   +EI   A  G    Y +CLDN  S++  KLV  S     G  GDG       +A      N+++    +    S ++ +A+LK               KQ +ER RLA   +     H+ MV  S+FETVV+I  S+FQ+ +VRRWF G+G+
Sbjct: 2130 LRLAPKEKRCVYEELEARQSASLEVFVLSGGNLDVSVAIDGPFPVVEESGLPRSAHRRGE---SGLSKPHSAHLVESKQSGAAFAAPHVIEIAADAAVGGGGIYRICLDNAASRISEKLVTLSVTKAGGAAGDGEPVRKKREAEAKPGKNSESIEKIEKRVVSLRSQIAVLK--------------DKQTRERRRLAHHKSLYDAKHNTMVEGSLFETVVYIVCSIFQIVFVRRWFSGKGI 2353          
BLAST of NO06G02320 vs. NCBI_GenBank
Match: CBJ29498.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 98.2 bits (243), Expect = 4.200e-17
Identity = 72/254 (28.35%), Postives = 123/254 (48.43%), Query Frame = 0
Query:   24 STHAVSLDVPPRDKICLYQYYEAGDTGTAEVFIVNGGNLDIGVSVEGPFADDKDGAPSMTTQETKVLYNAVVASSSAFLNQEHPTGVTASADGLEITWPAKPGAYALCLDNTMSQLQTK---LVEFSFPAPEGKGDGHEDDFDLDAALAGTDNADNGTIPDNIRQSYKADLALLKHSADRIARTLGDVQQKQQKERHRLALQTAANQNNHHKMVVSSMFETVVFIGVSLFQLFWVRRWFEGRGLRVSSRSREWA 275
            +T A +  +  R ++C ++Y E      A+VF+  GGNLDIG SV GP   D  G       + K+  +A + S +   + +    + +   G +  + A+ G Y +CL N  S  Q     +++ S    +G    H  D         TD  D G  P N     K DLA++    D +++   +++  Q+ ER +L  +  A ++N+  MV SS+ ET+V + V + Q+ +VR+WF G+G  +    ++WA
Sbjct:   18 ATAASTYLIEERAQVCFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGNVVHGRTKLKLRKSAKITSENILEDNDDSAELFS---GYDYKFDAEKGEYEICLSNDKSYAQEAKHVMLDISEVVEDGATKKHAKD-------DTTDLQDAGGSPKN-----KEDLAIITKEMDGLSKVFEEIKSFQELERMQLTQRKTAAEDNNASMVQSSVLETIVLLLVGIGQIIFVRKWFSGKGTLL----KQWA 252          
BLAST of NO06G02320 vs. NCBI_GenBank
Match: OEU18649.1 (hypothetical protein FRACYDRAFT_236928 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 76.3 bits (186), Expect = 1.700e-10
Identity = 62/246 (25.20%), Postives = 111/246 (45.12%), Query Frame = 0
Query:   28 VSLDVPPRDKICLYQYYEAGDTGTAEVFIVNGGNLDIGVSVEGPFAD-DKDGAPSMTTQETKVLYNAVVASSSAFLNQEHPTGVTAS------ADG---LEITWPAKPGAYALCLDNTMSQLQTKLVEFSFPAPEGKGD-GHEDDFDLDAALAGTDNADNGTI-PDNIRQSYKADLALLKHSADRIARTLGDVQQKQQKERHRLALQTAANQNNHHKMVVSSMFETVVFIGVSLFQLFWVRRWFEG 262
            + + +  R   CL++  + G+  T  VFI++G  L    SVEGP AD D D    + TQ      +   +  +   +QE       +       DG   L  T   + G Y +C+ +  +Q+  ++         G  D GH   ++    +      +  T   + I+     D    +     + R L ++Q  QQKER RL +    N+++H  MV++S+ ET++F+ V+ +Q++ +R+WF G
Sbjct:   35 MQVTINQRQAECLHEKLDEGEKVTVSVFILSGSQLKATWSVEGPIADLDVDSGLELYTQSMGFAPSGRKSQRTLSYSQEKREEKKLAQLKKVRQDGEPLLYTTSAPEAGWYRMCVTSNWNQVVAEMEMRKESELGGLNDEGHVRTYEEKQMIDEDQELEEDTASAEGIKDE---DFTETRDKVKDLRRLLNEIQSMQQKERRRLTVHAETNEHSHSSMVLNSLMETLLFMAVTGYQVYTIRKWFSG 277          
BLAST of NO06G02320 vs. NCBI_GenBank
Match: XP_002184183.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44361.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 71.2 bits (173), Expect = 5.500e-9
Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = 0
Query:  190 DLALLKHSADRIARTLGDVQQKQQKERHRLALQTAANQNNHHKMVVSSMFETVVFIGVSLFQLFWVRRWFEG 262
            D    K     + R L D+Q KQQ+ERHRL +  A N+++H +MV+SS+ ET++F+ V+ FQ+F +RRWF+G
Sbjct:  191 DFDSTKDKLKTLRRLLADIQTKQQQERHRLIVHAATNEHSHSRMVLSSLLETILFMAVTGFQVFTIRRWFKG 262          
The following BLAST results are available for this feature:
BLAST of NO06G02320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM26200.11.300e-9875.49suppressor enhancer of lin-12 protein 9 [Nannochlo... [more]
XP_009035203.14.500e-1931.95hypothetical protein AURANDRAFT_62671 [Aureococcus... [more]
CBJ29498.14.200e-1728.35expressed unknown protein [Ectocarpus siliculosus][more]
OEU18649.11.700e-1025.20hypothetical protein FRACYDRAFT_236928 [Fragilario... [more]
XP_002184183.15.500e-945.83predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000228NSK000228Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02320.1NO06G02320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597320gene_6549Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100025g58gene4279Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02320.1NO06G02320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02320 ID=NO06G02320|Name=NO06G02320|organism=Nannochloropsis oceanica|type=gene|length=825bp
ATGATACGAAAACCACCAGTCGCCGCCTTCGCCCTCCGTCTCCTCCTCCT
TCTCCTGCTGATCCTACCCTCCACCCACGCCGTCAGCCTCGATGTCCCTC
CCCGCGACAAAATCTGTCTTTACCAGTACTACGAGGCAGGAGACACGGGC
ACGGCCGAGGTCTTTATAGTGAACGGAGGTAATTTGGACATCGGCGTGAG
CGTGGAAGGGCCTTTCGCGGACGACAAGGATGGTGCACCCAGTATGACGA
CACAGGAAACCAAAGTGTTATACAACGCAGTAGTGGCGTCCTCCAGCGCC
TTTCTCAACCAAGAACATCCTACGGGCGTGACCGCCTCGGCGGACGGCCT
CGAAATCACATGGCCCGCCAAGCCTGGTGCGTATGCTTTGTGCCTGGACA
ACACCATGAGTCAACTGCAAACCAAGCTGGTGGAATTCTCCTTCCCCGCC
CCGGAAGGAAAGGGTGATGGGCACGAGGATGATTTTGACTTGGACGCGGC
GTTGGCCGGGACGGATAATGCTGATAATGGCACGATTCCTGACAACATCA
GGCAGTCGTACAAGGCGGATTTGGCCTTGTTGAAACACAGTGCGGACCGC
ATCGCGCGGACCTTGGGGGATGTCCAGCAGAAGCAACAGAAGGAGAGGCA
TCGGCTAGCGTTACAGACGGCGGCGAACCAGAATAACCACCACAAGATGG
TGGTGTCGAGTATGTTTGAGACGGTAGTATTTATTGGCGTGTCATTGTTT
CAATTATTTTGGGTGCGGAGGTGGTTTGAAGGGAGGGGGTTGAGGGTCTC
ATCAAGGTCGAGGGAGTGGGCATGA
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protein sequence of NO06G02320.1

>NO06G02320.1-protein ID=NO06G02320.1-protein|Name=NO06G02320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MIRKPPVAAFALRLLLLLLLILPSTHAVSLDVPPRDKICLYQYYEAGDTG
TAEVFIVNGGNLDIGVSVEGPFADDKDGAPSMTTQETKVLYNAVVASSSA
FLNQEHPTGVTASADGLEITWPAKPGAYALCLDNTMSQLQTKLVEFSFPA
PEGKGDGHEDDFDLDAALAGTDNADNGTIPDNIRQSYKADLALLKHSADR
IARTLGDVQQKQQKERHRLALQTAANQNNHHKMVVSSMFETVVFIGVSLF
QLFWVRRWFEGRGLRVSSRSREWA*
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Synonyms
Publications