NO06G02320.1, NO06G02320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02320.1
Unique NameNO06G02320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length825
Alignment locationchr6:672071..672895 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:672071..672895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02320.1 vs.
Match: EWM26200.1 (suppressor enhancer of lin-12 protein 9 [Nannochloropsis gaditana])

HSP 1 Score: 377.5 bits (968), Expect = 3.600e-101
Identity = 201/275 (73.09%), Postives = 226/275 (82.18%), Query Frame = 0 
Query:    3 RKPPVAAFALRLLLLLLLILPSTHAVSLDVPPRDKICLYQYYEAGDTGTAEVFIVNGGNLDIGVSVEGPFADDKDGAPSMTTQETKVLYNAVVASSSAFLNQEHPTGVTASADGLEITWPAKPGAYALCLDNTMSQLQTKLVEFSFPA-PEGKGDGHEDDFDLDAALAGTD--NADNGTIPDNIRQSYKADLALLKHSADRIARTLGDVQQKQQKERHRLALQTAANQNNHHKMVVSSMFETVVFIGVSLFQLFWVRRWFEGRGLRVSSRSREWA 275
            R+P     AL L +L L+  P+ H +SL+VPPRDK+CLYQYY+ G+TG AEVF+VNGGNLDIGVSVEGPF DD  G PS TTQETK +Y+A+VASSSAFLNQ HP GVTASADG+EI+WPA+PGAYALCLDNTMS +QTK++EFSFPA  EG G    DDFDLDAALA  +  +  N TI +NI+QSYKADLALLK SA RI RTL DVQ KQ KERHRLALQTAANQ NH KMVVSS+FETVVFI VSLFQLFWVRRWFEGRGLR  +RSREWA
Sbjct:    6 RRPRPLDLALPLFVLFLIPSPA-HPLSLEVPPRDKVCLYQYYDVGETGKAEVFVVNGGNLDIGVSVEGPFTDDVHGTPSKTTQETKTVYDAIVASSSAFLNQLHPAGVTASADGIEISWPAQPGAYALCLDNTMSHVQTKVIEFSFPASKEGAG---TDDFDLDAALAAANEGSGTNDTILENIKQSYKADLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEGRGLR--ARSREWA 274
The following BLAST results are available for this feature:
BLAST of NO06G02320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26200.13.600e-10173.09suppressor enhancer of lin-12 protein 9 [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02320NO06G02320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02320.1NO06G02320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02320.1.cds1NO06G02320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02320.1 ID=NO06G02320.1|Name=NO06G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=825bp
ATGATACGAAAACCACCAGTCGCCGCCTTCGCCCTCCGTCTCCTCCTCCT
TCTCCTGCTGATCCTACCCTCCACCCACGCCGTCAGCCTCGATGTCCCTC
CCCGCGACAAAATCTGTCTTTACCAGTACTACGAGGCAGGAGACACGGGC
ACGGCCGAGGTCTTTATAGTGAACGGAGGTAATTTGGACATCGGCGTGAG
CGTGGAAGGGCCTTTCGCGGACGACAAGGATGGTGCACCCAGTATGACGA
CACAGGAAACCAAAGTGTTATACAACGCAGTAGTGGCGTCCTCCAGCGCC
TTTCTCAACCAAGAACATCCTACGGGCGTGACCGCCTCGGCGGACGGCCT
CGAAATCACATGGCCCGCCAAGCCTGGTGCGTATGCTTTGTGCCTGGACA
ACACCATGAGTCAACTGCAAACCAAGCTGGTGGAATTCTCCTTCCCCGCC
CCGGAAGGAAAGGGTGATGGGCACGAGGATGATTTTGACTTGGACGCGGC
GTTGGCCGGGACGGATAATGCTGATAATGGCACGATTCCTGACAACATCA
GGCAGTCGTACAAGGCGGATTTGGCCTTGTTGAAACACAGTGCGGACCGC
ATCGCGCGGACCTTGGGGGATGTCCAGCAGAAGCAACAGAAGGAGAGGCA
TCGGCTAGCGTTACAGACGGCGGCGAACCAGAATAACCACCACAAGATGG
TGGTGTCGAGTATGTTTGAGACGGTAGTATTTATTGGCGTGTCATTGTTT
CAATTATTTTGGGTGCGGAGGTGGTTTGAAGGGAGGGGGTTGAGGGTCTC
ATCAAGGTCGAGGGAGTGGGCATGA
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protein sequence of NO06G02320.1

>NO06G02320.1-protein ID=NO06G02320.1-protein|Name=NO06G02320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MIRKPPVAAFALRLLLLLLLILPSTHAVSLDVPPRDKICLYQYYEAGDTG
TAEVFIVNGGNLDIGVSVEGPFADDKDGAPSMTTQETKVLYNAVVASSSA
FLNQEHPTGVTASADGLEITWPAKPGAYALCLDNTMSQLQTKLVEFSFPA
PEGKGDGHEDDFDLDAALAGTDNADNGTIPDNIRQSYKADLALLKHSADR
IARTLGDVQQKQQKERHRLALQTAANQNNHHKMVVSSMFETVVFIGVSLF
QLFWVRRWFEGRGLRVSSRSREWA*
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mRNA from alignment at chr6:672071..672895-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02320.1 ID=NO06G02320.1|Name=NO06G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=825bp|location=Sequence derived from alignment at chr6:672071..672895- (Nannochloropsis oceanica)
ATGATACGAAAACCACCAGTCGCCGCCTTCGCCCTCCGTCTCCTCCTCCT
TCTCCTGCTGATCCTACCCTCCACCCACGCCGTCAGCCTCGATGTCCCTC
CCCGCGACAAAATCTGTCTTTACCAGTACTACGAGGCAGGAGACACGGGC
ACGGCCGAGGTCTTTATAGTGAACGGAGGTAATTTGGACATCGGCGTGAG
CGTGGAAGGGCCTTTCGCGGACGACAAGGATGGTGCACCCAGTATGACGA
CACAGGAAACCAAAGTGTTATACAACGCAGTAGTGGCGTCCTCCAGCGCC
TTTCTCAACCAAGAACATCCTACGGGCGTGACCGCCTCGGCGGACGGCCT
CGAAATCACATGGCCCGCCAAGCCTGGTGCGTATGCTTTGTGCCTGGACA
ACACCATGAGTCAACTGCAAACCAAGCTGGTGGAATTCTCCTTCCCCGCC
CCGGAAGGAAAGGGTGATGGGCACGAGGATGATTTTGACTTGGACGCGGC
GTTGGCCGGGACGGATAATGCTGATAATGGCACGATTCCTGACAACATCA
GGCAGTCGTACAAGGCGGATTTGGCCTTGTTGAAACACAGTGCGGACCGC
ATCGCGCGGACCTTGGGGGATGTCCAGCAGAAGCAACAGAAGGAGAGGCA
TCGGCTAGCGTTACAGACGGCGGCGAACCAGAATAACCACCACAAGATGG
TGGTGTCGAGTATGTTTGAGACGGTAGTATTTATTGGCGTGTCATTGTTT
CAATTATTTTGGGTGCGGAGGTGGTTTGAAGGGAGGGGGTTGAGGGTCTC
ATCAAGGTCGAGGGAGTGGGCATGA
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Coding sequence (CDS) from alignment at chr6:672071..672895-

>NO06G02320.1 ID=NO06G02320.1|Name=NO06G02320.1|organism=Nannochloropsis oceanica|type=CDS|length=825bp|location=Sequence derived from alignment at chr6:672071..672895- (Nannochloropsis oceanica)
ATGATACGAAAACCACCAGTCGCCGCCTTCGCCCTCCGTCTCCTCCTCCT
TCTCCTGCTGATCCTACCCTCCACCCACGCCGTCAGCCTCGATGTCCCTC
CCCGCGACAAAATCTGTCTTTACCAGTACTACGAGGCAGGAGACACGGGC
ACGGCCGAGGTCTTTATAGTGAACGGAGGTAATTTGGACATCGGCGTGAG
CGTGGAAGGGCCTTTCGCGGACGACAAGGATGGTGCACCCAGTATGACGA
CACAGGAAACCAAAGTGTTATACAACGCAGTAGTGGCGTCCTCCAGCGCC
TTTCTCAACCAAGAACATCCTACGGGCGTGACCGCCTCGGCGGACGGCCT
CGAAATCACATGGCCCGCCAAGCCTGGTGCGTATGCTTTGTGCCTGGACA
ACACCATGAGTCAACTGCAAACCAAGCTGGTGGAATTCTCCTTCCCCGCC
CCGGAAGGAAAGGGTGATGGGCACGAGGATGATTTTGACTTGGACGCGGC
GTTGGCCGGGACGGATAATGCTGATAATGGCACGATTCCTGACAACATCA
GGCAGTCGTACAAGGCGGATTTGGCCTTGTTGAAACACAGTGCGGACCGC
ATCGCGCGGACCTTGGGGGATGTCCAGCAGAAGCAACAGAAGGAGAGGCA
TCGGCTAGCGTTACAGACGGCGGCGAACCAGAATAACCACCACAAGATGG
TGGTGTCGAGTATGTTTGAGACGGTAGTATTTATTGGCGTGTCATTGTTT
CAATTATTTTGGGTGCGGAGGTGGTTTGAAGGGAGGGGGTTGAGGGTCTC
ATCAAGGTCGAGGGAGTGGGCATGA
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Synonyms
Publications