NO06G02310, NO06G02310 (gene) Nannochloropsis oceanica

Overview
NameNO06G02310
Unique NameNO06G02310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length717
Alignment locationchr6:670760..671476 +

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal protein L14p/L23e family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:670760..671476 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: INTERPRO
TermDefinition
IPR036853Ribosomal_L14_sf
IPR000218Ribosomal_L14b/L23e
Homology
[Close]
BLAST of NO06G02310 vs. NCBI_GenBank
Match: ORX71370.1 (60S ribosomal protein L23 [Linderina pennispora])

HSP 1 Score: 252.3 bits (643), Expect = 9.000e-64
Identity = 121/138 (87.68%), Postives = 132/138 (95.65%), Query Frame = 0 
Query:    3 SKRGRGGTTGAKFRMTLGLPVAAVINCADNTGAKNLHIIAVGGIKGRLNRLPAASVGDMVMASVRKGKPELRKKVMPAVVIRQRKAWRRKDGIFIYFEDNAGVIVNNKGEMKGSAITGPVGKECADLWPRIASNSGTI 141
            SKRGRGG +G KFRMTLGLPV AVINCADN+GAKNL+IIAV GIKGRLNRLPAA VGDMV+A+VRKGKP+LRKKVMPAVV+RQRK+WRRKDG+F+YFEDNAGVIVN KGEMKGSAITGPVGKECADLWPRIASNSGT+
Sbjct:    2 SKRGRGGASGNKFRMTLGLPVGAVINCADNSGAKNLNIIAVAGIKGRLNRLPAAGVGDMVIATVRKGKPDLRKKVMPAVVVRQRKSWRRKDGVFLYFEDNAGVIVNPKGEMKGSAITGPVGKECADLWPRIASNSGTV 139
[Close]
BLAST of NO06G02310 vs. NCBI_GenBank
Match: XP_008890949.1 (60S ribosomal protein L23 [Phytophthora parasitica INRA-310] >XP_009523977.1 hypothetical protein PHYSODRAFT_285581 [Phytophthora sojae] >XP_024584645.1 60s ribosomal protein l23 [Plasmopara halstedii] >EGZ21260.1 hypothetical protein PHYSODRAFT_285581 [Phytophthora sojae] >ETI56118.1 60S ribosomal protein L23 [Phytophthora parasitica P1569] >ETK95909.1 60S ribosomal protein L23 [Phytophthora parasitica] >ETL49289.1 60S ribosomal protein L23 [Phytophthora parasitica] >ETM02341.1 60S ribosomal protein L23 [Phytophthora parasitica] >ETM55582.1 60S ribosomal protein L23 [Phytophthora parasitica] >ETN24943.1 60S ribosomal protein L23 [Phytophthora parasitica INRA-310] >ETO84851.1 60S ribosomal protein L23 [Phytophthora parasitica P1976] >ETP25912.1 60S ribosomal protein L23 [Phytophthora parasitica CJ01A1] >ETP53915.1 60S ribosomal protein L23 [Phytophthora parasitica P10297] >CEG48276.1 60s ribosomal protein l23 [Plasmopara halstedii] >KUF91126.1 60S ribosomal protein L23 [Phytophthora nicotianae] >KUG00034.1 Plectin protein [Phytophthora nicotianae] >POM69593.1 60S ribosomal protein L23 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 251.9 bits (642), Expect = 1.200e-63
Identity = 121/141 (85.82%), Postives = 135/141 (95.74%), Query Frame = 0 
Query:    1 MSSKRGRGGTTGAKFRMTLGLPVAAVINCADNTGAKNLHIIAVGGIKGRLNRLPAASVGDMVMASVRKGKPELRKKVMPAVVIRQRKAWRRKDGIFIYFEDNAGVIVNNKGEMKGSAITGPVGKECADLWPRIASNSGTIV 142
            M++KRGRGG +G KFRMTLGLPV AV+NCADN+GAKNL+IIAV GIKGRLNRLPAA VGDMV+A+V+KGKP+LRKKVMPAVVIRQRKAWRRKDG+F+YFEDNAGVIVN KGEMKGSAITGPVGKECADLWPRIASN+G+IV
Sbjct:    1 MATKRGRGGASGNKFRMTLGLPVGAVMNCADNSGAKNLYIIAVCGIKGRLNRLPAAGVGDMVLATVKKGKPDLRKKVMPAVVIRQRKAWRRKDGVFLYFEDNAGVIVNPKGEMKGSAITGPVGKECADLWPRIASNAGSIV 141
[Close]
BLAST of NO06G02310 vs. NCBI_GenBank
Match: GAY03510.1 (60S ribosomal protein L23 [Pythium insidiosum] >GAY01199.1 60S ribosomal protein L23 [Pythium insidiosum])

HSP 1 Score: 251.9 bits (642), Expect = 1.200e-63
Identity = 121/141 (85.82%), Postives = 135/141 (95.74%), Query Frame = 0 
Query:    1 MSSKRGRGGTTGAKFRMTLGLPVAAVINCADNTGAKNLHIIAVGGIKGRLNRLPAASVGDMVMASVRKGKPELRKKVMPAVVIRQRKAWRRKDGIFIYFEDNAGVIVNNKGEMKGSAITGPVGKECADLWPRIASNSGTIV 142
            M+SK GRGG TGAKFRMTLGLPV AV+NCADN+GAKNL+II+V GIKGRLNRLPAA VGDMV+A+V+KGKP+LRKKVMPAVVIRQRKAWRRKDG+++YFEDNAGVIVN KGEMKGSAITGPVGKECADLWPRIASN+G+IV
Sbjct:    1 MASKSGRGGLTGAKFRMTLGLPVGAVMNCADNSGAKNLYIISVCGIKGRLNRLPAAGVGDMVLATVKKGKPDLRKKVMPAVVIRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVGKECADLWPRIASNAGSIV 141
[Close]
BLAST of NO06G02310 vs. NCBI_GenBank
Match: XP_002908532.1 (60S ribosomal protein L23 [Phytophthora infestans T30-4] >AAY43411.1 ribosomal protein L23 [Phytophthora infestans] >EEY61615.1 60S ribosomal protein L23 [Phytophthora infestans T30-4])

HSP 1 Score: 250.8 bits (639), Expect = 2.600e-63
Identity = 120/141 (85.11%), Postives = 135/141 (95.74%), Query Frame = 0 
Query:    1 MSSKRGRGGTTGAKFRMTLGLPVAAVINCADNTGAKNLHIIAVGGIKGRLNRLPAASVGDMVMASVRKGKPELRKKVMPAVVIRQRKAWRRKDGIFIYFEDNAGVIVNNKGEMKGSAITGPVGKECADLWPRIASNSGTIV 142
            M++KRGRGG +G KFRMTLGLPV AV+NCADN+GAKNL+IIAV GIKGRLNRLPAA VGDMV+A+V+KGKP+LRKKVMPAVVIRQRK+WRRKDG+F+YFEDNAGVIVN KGEMKGSAITGPVGKECADLWPRIASN+G+IV
Sbjct:    1 MATKRGRGGASGNKFRMTLGLPVGAVMNCADNSGAKNLYIIAVCGIKGRLNRLPAAGVGDMVLATVKKGKPDLRKKVMPAVVIRQRKSWRRKDGVFLYFEDNAGVIVNPKGEMKGSAITGPVGKECADLWPRIASNAGSIV 141
[Close]
BLAST of NO06G02310 vs. NCBI_GenBank
Match: ORX80812.1 (ribosomal protein L14b/L23e [Basidiobolus meristosporus CBS 931.73] >ORX85489.1 ribosomal protein L14b/L23e [Basidiobolus meristosporus CBS 931.73] >ORX92946.1 ribosomal protein L14b/L23e [Basidiobolus meristosporus CBS 931.73] >ORY04844.1 ribosomal protein L14b/L23e [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 250.8 bits (639), Expect = 2.600e-63
Identity = 121/139 (87.05%), Postives = 132/139 (94.96%), Query Frame = 0 
Query:    3 SKRGRGGTTGAKFRMTLGLPVAAVINCADNTGAKNLHIIAVGGIKGRLNRLPAASVGDMVMASVRKGKPELRKKVMPAVVIRQRKAWRRKDGIFIYFEDNAGVIVNNKGEMKGSAITGPVGKECADLWPRIASNSGTIV 142
            SKRGRGG  G KFRM+LGLPV AVINCADN+GAKNL+IIAV GIKGRLNRLPAA VGDMVMA+V+KGKP+LRKKVMPAVVIRQRKAWRR+DG+F+YFEDNAGVIVN KGEMKGSAITGPVGKECADLWPRIAS+SGT+V
Sbjct:    2 SKRGRGGAAGNKFRMSLGLPVGAVINCADNSGAKNLYIIAVTGIKGRLNRLPAAGVGDMVMATVKKGKPDLRKKVMPAVVIRQRKAWRRRDGVFLYFEDNAGVIVNPKGEMKGSAITGPVGKECADLWPRIASSSGTVV 140
[Close]
BLAST of NO06G02310 vs. NCBI_GenBank
Match: XP_020388048.1 (60S ribosomal protein L23 [Rhincodon typus])

HSP 1 Score: 247.3 bits (630), Expect = 2.900e-62
Identity = 120/138 (86.96%), Postives = 133/138 (96.38%), Query Frame = 0 
Query:    3 SKRGRGGTTGAKFRMTLGLPVAAVINCADNTGAKNLHIIAVGGIKGRLNRLPAASVGDMVMASVRKGKPELRKKVMPAVVIRQRKAWRRKDGIFIYFEDNAGVIVNNKGEMKGSAITGPVGKECADLWPRIASNSGTI 141
            SKRGRGG++GAKFR++LGLPV AVINCADNTGAKNL+II+V GIKGRLNRLPAA VGDMVMA+V+KGKPELRKKV PAVVIRQRKA+RRKDG+F+YFEDNAGVIVNNKGEMKGSAITGPV KECADLWPRIASN+G+I
Sbjct:    2 SKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKAYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of NO06G02310 vs. NCBI_GenBank
Match: CCA20856.1 (60S ribosomal protein L23 putative [Albugo laibachii Nc14])

HSP 1 Score: 246.9 bits (629), Expect = 3.800e-62
Identity = 118/141 (83.69%), Postives = 133/141 (94.33%), Query Frame = 0 
Query:    1 MSSKRGRGGTTGAKFRMTLGLPVAAVINCADNTGAKNLHIIAVGGIKGRLNRLPAASVGDMVMASVRKGKPELRKKVMPAVVIRQRKAWRRKDGIFIYFEDNAGVIVNNKGEMKGSAITGPVGKECADLWPRIASNSGTIV 142
            MSSKRGRGG +G K RM LGLPVAAV NCADN+GA+NL+IIAV GIKGRLNRLPAA VGDMV+A+V+KGKP+LRKKVMPAV+IRQRK+WRR+DG+F+YFEDNAGVIVN KGEMKGSAITGPVGKECADLWPRIASN+G+IV
Sbjct:    1 MSSKRGRGGASGNKLRMALGLPVAAVANCADNSGARNLYIIAVCGIKGRLNRLPAAGVGDMVLATVKKGKPDLRKKVMPAVIIRQRKSWRRRDGVFLYFEDNAGVIVNPKGEMKGSAITGPVGKECADLWPRIASNAGSIV 141
[Close]
BLAST of NO06G02310 vs. NCBI_GenBank
Match: EXX60184.1 (ribosomal 60S subunit protein L23B [Rhizophagus irregularis DAOM 197198w] >GBC35949.1 60S ribosomal protein L23 [Rhizophagus irregularis DAOM 181602] >PKC16875.1 ribosomal protein L14b/L23e [Rhizophagus irregularis] >PKC69468.1 ribosomal protein L14b/L23e [Rhizophagus irregularis] >PKY52087.1 ribosomal protein L14b/L23e [Rhizophagus irregularis] >POG67013.1 60S ribosomal subunit protein L23B [Rhizophagus irregularis DAOM 181602=DAOM 197198])

HSP 1 Score: 246.9 bits (629), Expect = 3.800e-62
Identity = 118/139 (84.89%), Postives = 131/139 (94.24%), Query Frame = 0 
Query:    3 SKRGRGGTTGAKFRMTLGLPVAAVINCADNTGAKNLHIIAVGGIKGRLNRLPAASVGDMVMASVRKGKPELRKKVMPAVVIRQRKAWRRKDGIFIYFEDNAGVIVNNKGEMKGSAITGPVGKECADLWPRIASNSGTIV 142
            SKRGRGG +G KFRMTLGLPV AV+NCADN+GAKNL++I+V GI GRLNRLPAA VGDMVMA+V+KGKP+LRKKVMPAVVIRQRK WRRKDG+F+YFEDNAGVIVN KGEMKGSAITGPVGKECADLWPRIAS+SGT+V
Sbjct:    2 SKRGRGGASGNKFRMTLGLPVGAVMNCADNSGAKNLYVISVKGIHGRLNRLPAAGVGDMVMATVKKGKPDLRKKVMPAVVIRQRKPWRRKDGVFLYFEDNAGVIVNPKGEMKGSAITGPVGKECADLWPRIASSSGTVV 140
[Close]
BLAST of NO06G02310 vs. NCBI_GenBank
Match: NP_001279708.1 (ribosomal protein L23 [Callorhinchus milii] >AFK10869.1 60S ribosomal protein L23 [Callorhinchus milii] >AFM86264.1 60S ribosomal protein L23 [Callorhinchus milii] >AFM87585.1 60S ribosomal protein L23 [Callorhinchus milii] >AFM87720.1 60S ribosomal protein L23 [Callorhinchus milii] >AFM88017.1 60S ribosomal protein L23 [Callorhinchus milii] >AFM90623.1 60S ribosomal protein L23 [Callorhinchus milii] >AFM90633.1 60S ribosomal protein L23 [Callorhinchus milii] >AFM90748.1 60S ribosomal protein L23 [Callorhinchus milii])

HSP 1 Score: 246.5 bits (628), Expect = 4.900e-62
Identity = 120/138 (86.96%), Postives = 132/138 (95.65%), Query Frame = 0 
Query:    3 SKRGRGGTTGAKFRMTLGLPVAAVINCADNTGAKNLHIIAVGGIKGRLNRLPAASVGDMVMASVRKGKPELRKKVMPAVVIRQRKAWRRKDGIFIYFEDNAGVIVNNKGEMKGSAITGPVGKECADLWPRIASNSGTI 141
            SKRGRGG+ GAKFR++LGLPV AVINCADNTGAKNL+II+V GIKGRLNRLPAA VGDMVMA+V+KGKPELRKKV PAVVIRQRKA+RRKDG+F+YFEDNAGVIVNNKGEMKGSAITGPV KECADLWPRIASN+G+I
Sbjct:    2 SKRGRGGSCGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKAYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of NO06G02310 vs. NCBI_GenBank
Match: AAH62716.1 (Ribosomal protein L23 [Homo sapiens] >AIC55567.1 RPL23, partial [synthetic construct] >SJX26900.1 unnamed protein product, partial [Human ORFeome Gateway entry vector])

HSP 1 Score: 246.5 bits (628), Expect = 4.900e-62
Identity = 119/138 (86.23%), Postives = 133/138 (96.38%), Query Frame = 0 
Query:    3 SKRGRGGTTGAKFRMTLGLPVAAVINCADNTGAKNLHIIAVGGIKGRLNRLPAASVGDMVMASVRKGKPELRKKVMPAVVIRQRKAWRRKDGIFIYFEDNAGVIVNNKGEMKGSAITGPVGKECADLWPRIASNSGTI 141
            SKRGRGG++GAKFR++LGLPV AVINCADNTGAKNL+II+V GIKGRLNRLPAA VGDMVMA+V+KGKPELRKKV PAVVIRQRK++RRKDG+F+YFEDNAGVIVNNKGEMKGSAITGPV KECADLWPRIASN+G+I
Sbjct:    2 SKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVRPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
The following BLAST results are available for this feature:
BLAST of NO06G02310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
ORX71370.19.000e-6487.6860S ribosomal protein L23 [Linderina pennispora][more]
XP_008890949.11.200e-6385.8260S ribosomal protein L23 [Phytophthora parasitica... [more]
GAY03510.11.200e-6385.8260S ribosomal protein L23 [Pythium insidiosum] >GA... [more]
XP_002908532.12.600e-6385.1160S ribosomal protein L23 [Phytophthora infestans ... [more]
ORX80812.12.600e-6387.05ribosomal protein L14b/L23e [Basidiobolus meristos... [more]
XP_020388048.12.900e-6286.9660S ribosomal protein L23 [Rhincodon typus][more]
CCA20856.13.800e-6283.6960S ribosomal protein L23 putative [Albugo laibach... [more]
EXX60184.13.800e-6284.89ribosomal 60S subunit protein L23B [Rhizophagus ir... [more]
NP_001279708.14.900e-6286.96ribosomal protein L23 [Callorhinchus milii] >AFK10... [more]
AAH62716.14.900e-6286.23Ribosomal protein L23 [Homo sapiens] >AIC55567.1 R... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000229NSK000229Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02310.1NO06G02310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597315gene_6548Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100025g57gene4280Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02310.1NO06G02310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02310 ID=NO06G02310|Name=NO06G02310|organism=Nannochloropsis oceanica|type=gene|length=717bp
ATGTCTTCCAAGCGTGGACGCGGTGGTACCACGGGCGCCAAGTTCCGTAT
GACCCTGGGTCTGCCCGTCGCCGCCGTCATCAACTGCGCCGgtgagtggg
ggttggctataggtttgatttacttgatgggcttgttggttgtgtgtggg
tatgtcagtgaaagatcaccttgcatatgtaggtgcatgtcagaaggcaa
tgtccgcccgggggtctcacggggggcagggtctcatcgtcgtttctgtc
tcgaagaatatggagagtaactcactgccgggatcgtgtggacgtgccgt
ggagacgatctagtacaggcatatttcctagaagcttaagctgacccttt
ctttttctcctttttctcttttctcgacacagACAACACGGGCGCCAAGA
ACTTGCACATCATCGCGGTGGGCGGGATCAAGGGCCGTTTGAACCGCCTG
CCCGCTGCTTCTGTGGGGGACATGGTGATGGCATCCGTACGCAAGGGGAA
GCCCGAGCTACGTAAAAAGGTGATGCCTGCCGTGGTGATCCGGCAGCGCA
AAGCCTGGCGAAGAAAAGATGGGATTTTCATCTACTTTGAGGATAATGCG
GGGGTTATCGTCAACAACAAGGGGGAGATGAAGGGGTCGGCAATTACAGG
ACCGGTGGGGAAGGAATGCGCGGATCTCTGGCCTCGTATTGCCTCTAACT
CGGGCACGATTGTTTAA
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protein sequence of NO06G02310.1

>NO06G02310.1-protein ID=NO06G02310.1-protein|Name=NO06G02310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MSSKRGRGGTTGAKFRMTLGLPVAAVINCADNTGAKNLHIIAVGGIKGRL
NRLPAASVGDMVMASVRKGKPELRKKVMPAVVIRQRKAWRRKDGIFIYFE
DNAGVIVNNKGEMKGSAITGPVGKECADLWPRIASNSGTIV*
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Synonyms
Publications