NO06G00620, NO06G00620 (gene) Nannochloropsis oceanica

Overview
NameNO06G00620
Unique NameNO06G00620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2088
Alignment locationchr6:232797..234884 +

Link to JBrowse

Properties
Property NameValue
DescriptionFarnesyltransferase beta subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:232797..234884 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0018343protein farnesylation
Vocabulary: Cellular Component
TermDefinition
GO:0005965protein farnesyltransferase complex
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016740transferase activity
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR008930Terpenoid_cyclase/PrenylTrfase
IPR026872FTB
IPR001330Prenyltrans
Homology
BLAST of NO06G00620 vs. NCBI_GenBank
Match: EWM26121.1 (farnesyltransferase beta subunit [Nannochloropsis gaditana])

HSP 1 Score: 611.3 bits (1575), Expect = 2.500e-171
Identity = 302/477 (63.31%), Postives = 353/477 (74.00%), Query Frame = 0
Query:    2 CVRHLRSLEKLDEHEASGLQAAGFFNDDGEVRLLRKQHLDYVMRGLRYLGPGFICLDASRPWLCYWMLHSIDLLKGLETTGEAAHADVDTELLRHVMTTMASCQNVGGGFGGGTQQLSHCAPTYAAVLALLIVGTEEAYRIIDRPALYRWFLARKHPSGGFCMHDDGEVDVRGTYTVISIASLLNLLTPELTADVADYLLSCQTYEGGFGGEPGQEAHGGYVFCAFAALVILGRAEEADLVSLEGWVARRQMEMEGGFQGRTNKLVDGCYSFWQGATAVLVDMVLSGEGEAEEAVGWR-GSLGQAQPCSSRPSSPCLQTGDGKDGGSPRLDEVSADDAANISYKTVAIQPSLDVGEHDTPSLGRVPGLNQHALQRYILHCAQALDGGLRDKPGKPRDFYHTCYNLSGLSCAQWG-----------RAGGKGGTALVYGDVGNLLHITNPVYNIRREKVERALRFYY-TAPASHGALL 466
            C   L S   LD+     LQA+G FND G++RLLR++H+ Y+M+GL +LGPGFICLDASRPWLCYW+LHS+DLL+GLE+    +H+    +L R V  TM SCQN GGGFGGG  Q+SHCAPTYAAVLALLI+GTEEAY+ IDRPALY+WFLARKH SGGFCMHDDGEVDVRGTYTVISIAS+LN+LTP+L A V +YLLSCQTYEGGFGGE  QEAHGGYVFCAFAAL+IL   +  DL SL+GW+ARRQM +EGGFQGRTNKLVDGCYSFWQGATA+LV+M L GE E  + VGWR  + G+   C     +P   T D +D G    D     D  ++  +  A++  +   E      G +  L+QHALQRYILHCAQALDGGLRDKP KPRDFYHTCYNLSGLSCAQWG           R     G  LVYGD+GNLL ITNP+YNIR++KV+RALRF+Y   P SH  LL
Sbjct:   31 CTSLLNSWCNLDQSSRGKLQASGLFNDSGDIRLLRERHVAYLMKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLES---RSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLC-----APQSYTEDLRDSGVSGKDFGDTTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYREGPESHEVLL 499          
BLAST of NO06G00620 vs. NCBI_GenBank
Match: EWM26122.1 (farnesyltransferase beta subunit [Nannochloropsis gaditana])

HSP 1 Score: 570.9 bits (1470), Expect = 3.700e-159
Identity = 283/435 (65.06%), Postives = 326/435 (74.94%), Query Frame = 0
Query:   44 MRGLRYLGPGFICLDASRPWLCYWMLHSIDLLKGLETTGEAAHADVDTELLRHVMTTMASCQNVGGGFGGGTQQLSHCAPTYAAVLALLIVGTEEAYRIIDRPALYRWFLARKHPSGGFCMHDDGEVDVRGTYTVISIASLLNLLTPELTADVADYLLSCQTYEGGFGGEPGQEAHGGYVFCAFAALVILGRAEEADLVSLEGWVARRQMEMEGGFQGRTNKLVDGCYSFWQGATAVLVDMVLSGEGEAEEAVGWR-GSLGQAQPCSSRPSSPCLQTGDGKDGGSPRLDEVSADDAANISYKTVAIQPSLDVGEHDTPSLGRVPGLNQHALQRYILHCAQALDGGLRDKPGKPRDFYHTCYNLSGLSCAQWG-----------RAGGKGGTALVYGDVGNLLHITNPVYNIRREKVERALRFYY-TAPASHGALL 466
            M+GL +LGPGFICLDASRPWLCYW+LHS+DLL+GLE+    +H+    +L R V  TM SCQN GGGFGGG  Q+SHCAPTYAAVLALLI+GTEEAY+ IDRPALY+WFLARKH SGGFCMHDDGEVDVRGTYTVISIAS+LN+LTP+L A V +YLLSCQTYEGGFGGE  QEAHGGYVFCAFAAL+IL   +  DL SL+GW+ARRQM +EGGFQGRTNKLVDGCYSFWQGATA+LV+M L GE E  + VGWR  + G+   C     +P   T D +D G    D     D  ++  +  A++  +   E      G +  L+QHALQRYILHCAQALDGGLRDKP KPRDFYHTCYNLSGLSCAQWG           R     G  LVYGD+GNLL ITNP+YNIR++KV+RALRF+Y   P SH  LL
Sbjct:    1 MKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLES---RSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLC-----APQSYTEDLRDSGVSGKDFGDTTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYREGPESHEVLL 427          
BLAST of NO06G00620 vs. NCBI_GenBank
Match: CBJ26429.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 413.3 bits (1061), Expect = 1.000e-111
Identity = 226/494 (45.75%), Postives = 274/494 (55.47%), Query Frame = 0
Query:   12 LDEHEASGLQAAGFFNDDGEVRLLRKQHLDYVMRGLRYLGPGFICLDASRPWLCYWMLHSIDLLKGLETTGEAAHADVDTELLRHVMTTMASCQN-VGGGFGGGTQQLSHCAPTYAAVLALLIVGTEEAYRIIDRPALYRWFLARKHPSGGFCMHDDGEVDVRGTYTVISIASLLNLLTPELTADVADYLLSCQTYEGGFGGEPGQEAHGGYVFCAFAALVILGRAEEADLVSLEGWVARRQMEMEGGFQGRTNKLVDGCYSFWQGATAVLVDMVLSGEGEAEEAVGWRGSLGQAQPCSSRPSSPCLQTGDGKDGGSPRLDEVSADDAANISYKTVAIQPSLDVGEHDTPSLGRVPG----------------------------------------LNQHALQRYILHCAQALDGGLRDKPGKPRDFYHTCYNLSGLSCAQWGRAGGKGGTALVYGDVGNLLHITNPVYNIRREKVERALRFYYTAPASHGAL 465
            L++ E +     G  N  GE  L+R +H  Y+MRGL  LGPGFI LDASRPW+ YW+LHS+DLL                E+ + ++ T+ SCQ+ + GGFGGG QQL HCAP YA+VL+LLI+GT EAY  I+R ALYR F++ KH SGGF MHDDGEVD RGTYTVI++ASLLN+LTPEL+  VAD+   CQTYEGGFGGEP  EAHGGY FCAFA+LVILG  E ADL  L  W+  RQM  EGGFQGRTNKLVDGCYSFWQG    ++D V +G    E  V  R S                                                P +     +  ++G V G                                         ++  LQ Y+L C+Q  DGGLRDKPGKPRDFYHTCY LSGLS AQ   +     +  V G+  NLL  TNPVYNI  +KV RA+ ++   P+ H  L
Sbjct:   57 LEDEELAEFTDQGIVNAAGEAVLMRTKHEVYLMRGLCGLGPGFISLDASRPWMVYWILHSLDLLDHFP----------QQEMTQRILRTVLSCQDTINGGFGGGPQQLPHCAPMYASVLSLLILGTPEAYAGIERSALYRLFMSLKHASGGFRMHDDGEVDARGTYTVIAVASLLNMLTPELSEGVADFAARCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGAGERADLEGLRHWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVAILDYVTAGR---ESEVSHRDSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMQDPEPPKVVGVRVEESAVGTVEGGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFSRKRLQEYVLMCSQQSDGGLRDKPGKPRDFYHTCYTLSGLSVAQHCLS----SSPTVVGNSSNLLRPTNPVYNIAEDKVLRAISYFQALPSDHATL 533          
BLAST of NO06G00620 vs. NCBI_GenBank
Match: XP_009035835.1 (hypothetical protein AURANDRAFT_24404 [Aureococcus anophagefferens] >EGB09801.1 hypothetical protein AURANDRAFT_24404 [Aureococcus anophagefferens])

HSP 1 Score: 409.8 bits (1052), Expect = 1.100e-110
Identity = 215/441 (48.75%), Postives = 262/441 (59.41%), Query Frame = 0
Query:   27 NDDGEVRLLRKQHLDYVMRGLRYLGPGFICLDASRPWLCYWMLHSIDLLKGLETTGEAAHADVDTELLRHVMTTMASCQNVGGGFGGGTQQLSHCAPTYAAVLALLIVGTEEAYRIIDRPALYRWFLARKHPSGGFCMHDDGEVDVRGTYTVISIASLLNLLTPELTADVADYLLSCQTYEGGFGGEPGQEAHGGYVFCAFAALVILGRAEEADLVSLEGWVARRQMEMEGGFQGRTNKLVDGCYSFWQGATAVLVDMVLSGEGEAEEAVGWRGSLGQAQPCSSRPSSPCLQTGDGKDGGSPRLDEVSADDAANISYKTVAIQPSLDVGEHDTPSLGRVPGLNQHALQRYILHCAQAL-DGGLRDKPGKPRDFYHTCYNLSGLSCAQWGRAGGKGGTALVYGDVGNLLHITNPVYNIRREKVERALRFYYTAPASHGALLS 467
            +D    RL+R++H+ Y+M+GL  LG  ++ LDASRPWLCYW+LH +DLL  L             E +   + T+A C++  GG+GGG QQL+HCAPTYAA LA+ ++GT  AY  +DR  LY + L+ K PSGGF MHDDGEVDVRGTYT +++A+L N+LTPEL    A Y L CQTYEGGFGGEPG EAHGGYVFCA AALVIL   +  DL +LE W+ARRQ  +EGGFQGRTNKLVDGCYSFWQG T  LV  V  G   ++EA                                                                      PGL   ALQRYIL CAQ   +GGLRDKPGK RD+YHTCY LSGL+ +Q  R  G   + +VYGD GNLLH T+PV+N+R +KV RA  F+   P +H  L S
Sbjct:    3 DDRRRPRLMRERHVAYLMKGLGGLGGSYVALDASRPWLCYWILHGMDLLDAL-----------PEEKIDDCVATLAKCRSPTGGYGGGPQQLAHCAPTYAASLAIAVLGTRRAYESVDRKGLYAFLLSMKDPSGGFRMHDDGEVDVRGTYTALAVAALFNVLTPELAEGAAAYALRCQTYEGGFGGEPGVEAHGGYVFCALAALVILNATDAVDLDALERWLARRQTRVEGGFQGRTNKLVDGCYSFWQGGTLALVAHVRRGHTRSDEA---------------------------------------------------------------------PPGL--RALQRYILLCAQVYPEGGLRDKPGKNRDYYHTCYCLSGLAASQ--RLYGDDASTVVYGDPGNLLHETHPVFNVRVDKVARAAAFFAGLPHTHAELTS 359          
BLAST of NO06G00620 vs. NCBI_GenBank
Match: GAX95270.1 (prenyltransferase-like protein, putative [Pythium insidiosum])

HSP 1 Score: 361.3 bits (926), Expect = 4.500e-96
Identity = 202/456 (44.30%), Postives = 252/456 (55.26%), Query Frame = 0
Query:    9 LEKLDEHEASGLQAAGFFNDDGEVRLLRKQHLDYVMRGLRYLGPGFICLDASRPWLCYWMLHSIDLLKGLETTGEAAHADVDTELLRHVMTTMASCQNVGG-GFGGGTQQLSHCAPTYAAVLALLIVGTEEAYRIIDRPALYRWFLARK-HPSGGFCMHDDGEVDVRGTYTVISIASLLNLLTPELTADVADYLLSCQTYEGGFGGEPGQEAHGGYVFCAFAALVILGRAEEA-DLVSLEGWVARRQMEMEGGFQGRTNKLVDGCYSFWQGATAVLVDMVLSGEGEAEEAVGWRGSLGQAQPCSSRPSSPCLQTGDGKDGGSPRLDEVSADDAANISYKTVAIQPSLDVGEHDTPSLGRVPGLNQHALQRYILHCAQALDGGLRDKPGKPRDFYHTCYNLSGLSCAQWG-------RAGGKGGTALVYGDVGNLLHITNPVYNIRREKVERALRFY 455
            LE+L   +   LQ  GF N +   RL+R +H+ Y+ RGL  L  GF+ LDASRPW+CYW+LH+++LL  L      A  D + +LL   ++T+    N  G GFGGG QQL H A TYA+ L L ++G+++A   +DR ALYR+F+ARK H SG F  HD GEVDVR TY VISIASL  +LT ELT  V DY+++CQTYEGGFGGEP  EAHGGY FCA A L +L       DL +L  W++ RQM  EGG+QGRTNKLVDGCYSFWQGA   L++  L   G                                                                       +  V   ++  LQ+YIL C Q ++GGLRDKPGKPRD YH+CY LSGLS AQ G       RA G     +V GD  NL+  T+P YNI  +KVER   F+
Sbjct:   35 LEQLPIDQQLELQQQGFCNTELAPRLMRDKHIAYLRRGLAQLPGGFVSLDASRPWICYWILHALELLDAL-----PAADDPNDDLLHRAVSTIRHFWNASGLGFGGGPQQLGHTATTYASCLTLALIGSDDALATVDRQALYRFFMARKHHASGAFAAHDGGEVDVRVTYCVISIASLFGILTDELTHGVVDYVVACQTYEGGFGGEPFNEAHGGYAFCAVATLWLLDSLHAVRDLDALVAWLSNRQMPFEGGYQGRTNKLVDGCYSFWQGALPALLEEELERRG-----------------------------------------------------------------------MTTVYQCHRAQLQQYILLCGQQVEGGLRDKPGKPRDHYHSCYCLSGLSLAQHGMRARHRPRADGSEPAPVVVGDAQNLVRATHPAYNIGVDKVERVRAFF 414          
BLAST of NO06G00620 vs. NCBI_GenBank
Match: XP_008902887.1 (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >ETL97602.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETN11965.1 hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >ETP20911.1 hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 358.2 bits (918), Expect = 3.800e-95
Identity = 198/440 (45.00%), Postives = 247/440 (56.14%), Query Frame = 0
Query:   20 LQAAGFFNDDGEVRLLRKQHLDYVMRGLRYLGPGFICLDASRPWLCYWMLHSIDLLKGLETTGEAAHADVDTELLRHVMTTMASCQN--VGGGFGGGTQQLSHCAPTYAAVLALLIVGTEEAYRIIDRPALYRWFLARKH-PSGGFCMHDDGEVDVRGTYTVISIASLLNLLTPELTADVADYLLSCQTYEGGFGGEPGQEAHGGYVFCAFAALVILGRAEE-ADLVSLEGWVARRQMEMEGGFQGRTNKLVDGCYSFWQGAT-AVLVDMVLSGEGEAEEAVGWRGSLGQAQPCSSRPSSPCLQTGDGKDGGSPRLDEVSADDAANISYKTVAIQPSLDVGEHDTPSLGRVPGLNQHALQRYILHCAQALDGGLRDKPGKPRDFYHTCYNLSGLSCAQWGRAGGKGGTALVYGDVGNLLHITNPVYNIRREKVERALRFY 455
            LQ   F N D E  L+R++H++Y+ RGL  L  GF+ LDASRPW+ YW+LH+++LL  L             E+   V+ T+  C N    GGFGGG +QL H A  YA+ L L ++GT EA   +DR  LYR+F++RKH  +G F  HD GEVDVR TY VISIASL  +LT EL A V DY+LSCQTYEGGFGGEPG EAHGGY FC+ AAL IL   ++  DL  L  W+A RQM  EGG+QGRTNKLVDGCYSFWQGA  A+L D+V    G+                                                 + Y+                        +Q  LQ+YIL C Q + GGLRDKPGKPRD YH+CY LSGLS AQ G   GK    +V+GD  NL+  T+P YNI  +K  +A+ ++
Sbjct:   53 LQQLSFVNTDLEPLLMREKHIEYLKRGLTRLPAGFVSLDASRPWIIYWILHALELLDAL-----------SEEVTDRVIGTLKPCWNDDHDGGFGGGPKQLGHTATNYASCLTLALLGTPEALESVDRQKLYRFFMSRKHAATGAFTAHDGGEVDVRVTYCVISIASLYGILTDELKAGVVDYILSCQTYEGGFGGEPGNEAHGGYAFCSVAALYILNAVDQIRDLPGLLHWLANRQMPFEGGYQGRTNKLVDGCYSFWQGAVPALLADVVRERYGD------------------------------------------------EVPYQ-----------------------CHQEQLQKYILLCGQEISGGLRDKPGKPRDHYHSCYCLSGLSVAQHGDGRGK---PVVFGDASNLVARTHPAYNISYDKATQAIEYF 407          
BLAST of NO06G00620 vs. NCBI_GenBank
Match: ETI51129.1 (hypothetical protein, variant 1 [Phytophthora parasitica P1569] >ETK91029.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETL44430.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETM50761.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETO79886.1 hypothetical protein, variant 1 [Phytophthora parasitica P1976] >ETP48844.1 hypothetical protein, variant 1 [Phytophthora parasitica P10297])

HSP 1 Score: 355.9 bits (912), Expect = 1.900e-94
Identity = 197/440 (44.77%), Postives = 246/440 (55.91%), Query Frame = 0
Query:   20 LQAAGFFNDDGEVRLLRKQHLDYVMRGLRYLGPGFICLDASRPWLCYWMLHSIDLLKGLETTGEAAHADVDTELLRHVMTTMASCQN--VGGGFGGGTQQLSHCAPTYAAVLALLIVGTEEAYRIIDRPALYRWFLARKH-PSGGFCMHDDGEVDVRGTYTVISIASLLNLLTPELTADVADYLLSCQTYEGGFGGEPGQEAHGGYVFCAFAALVILGRAEE-ADLVSLEGWVARRQMEMEGGFQGRTNKLVDGCYSFWQGAT-AVLVDMVLSGEGEAEEAVGWRGSLGQAQPCSSRPSSPCLQTGDGKDGGSPRLDEVSADDAANISYKTVAIQPSLDVGEHDTPSLGRVPGLNQHALQRYILHCAQALDGGLRDKPGKPRDFYHTCYNLSGLSCAQWGRAGGKGGTALVYGDVGNLLHITNPVYNIRREKVERALRFY 455
            LQ   F N D E  L+R++H++Y+ RGL  L  GF+ LDASRPW+ YW+LH+++LL  L             E+   V+ T+  C N    G FGGG +QL H A  YA+ L L ++GT EA   +DR  LYR+F++RKH  +G F  HD GEVDVR TY VISIASL  +LT EL A V DY+LSCQTYEGGFGGEPG EAHGGY FC+ AAL IL   ++  DL  L  W+A RQM  EGG+QGRTNKLVDGCYSFWQGA  A+L D+V    G+                                                 + Y+                        +Q  LQ+YIL C Q + GGLRDKPGKPRD YH+CY LSGLS AQ G   GK    +V+GD  NL+  T+P YNI  +K  +A+ ++
Sbjct:   53 LQQLSFVNTDLEPLLMREKHIEYLKRGLTRLPAGFVSLDASRPWIIYWILHALELLDAL-----------SEEVTDRVIGTLKPCWNDDHDGAFGGGPKQLGHTATNYASCLTLALLGTPEALESVDRQKLYRFFMSRKHAATGAFTAHDGGEVDVRVTYCVISIASLYGILTDELKAGVVDYILSCQTYEGGFGGEPGNEAHGGYAFCSVAALYILNAVDQIRDLPGLLHWLANRQMPFEGGYQGRTNKLVDGCYSFWQGAVPALLADVVRERYGD------------------------------------------------EVPYQ-----------------------CHQEQLQKYILLCGQEISGGLRDKPGKPRDHYHSCYCLSGLSVAQHGDGRGK---PVVFGDASNLVARTHPAYNISYDKATQAIEYF 407          
BLAST of NO06G00620 vs. NCBI_GenBank
Match: XP_009523088.1 (hypothetical protein PHYSODRAFT_350539 [Phytophthora sojae] >EGZ20371.1 hypothetical protein PHYSODRAFT_350539 [Phytophthora sojae])

HSP 1 Score: 354.4 bits (908), Expect = 5.500e-94
Identity = 200/451 (44.35%), Postives = 251/451 (55.65%), Query Frame = 0
Query:    9 LEKLDEHEASGLQAAGFFNDDGEVRLLRKQHLDYVMRGLRYLGPGFICLDASRPWLCYWMLHSIDLLKGLETTGEAAHADVDTELLRHVMTTMASCQN--VGGGFGGGTQQLSHCAPTYAAVLALLIVGTEEAYRIIDRPALYRWFLARKHP-SGGFCMHDDGEVDVRGTYTVISIASLLNLLTPELTADVADYLLSCQTYEGGFGGEPGQEAHGGYVFCAFAALVILGRAEE-ADLVSLEGWVARRQMEMEGGFQGRTNKLVDGCYSFWQGAT-AVLVDMVLSGEGEAEEAVGWRGSLGQAQPCSSRPSSPCLQTGDGKDGGSPRLDEVSADDAANISYKTVAIQPSLDVGEHDTPSLGRVPGLNQHALQRYILHCAQALDGGLRDKPGKPRDFYHTCYNLSGLSCAQWGRAGGKGGTALVYGDVGNLLHITNPVYNIRREKVERALRFY 455
            L +L   +   LQ   F N D E  L+R++H+ Y+ RGL  L  GF+ LDASRPW+ YW+LH+++LL  L             E +   + T+  C N   GGGFGGG +QL H A TYA+ L L ++GT EA   +DR ALY++FL+RK P +GGF  HD GEVD R TY VI I+SL  +LT EL A V DY+LSCQTYEGGFGGEPG EAHGG  FC+ A L IL   ++  DL  L  W+A RQM  EGG+QGRTNKLVDGCYSFWQGA  A+L D+V    GE                                                ++ Y+                        +Q  LQ+YIL C Q + GGLRDKPGKPRD YH+CY LSGLS AQ G   GK G  +V+GD  NL+  T+P YNI  +K  +A+ ++
Sbjct:   43 LPELPLEQQLQLQQLSFVNTDLEPLLMREKHIAYLKRGLTRLSAGFVALDASRPWIIYWILHALELLDALL-----------EEEIERAIATLKMCWNDERGGGFGGGPKQLGHAATTYASCLTLALLGTPEALETVDRQALYQFFLSRKDPVTGGFTAHDGGEVDSRMTYCVICISSLFGILTDELKAGVVDYVLSCQTYEGGFGGEPGNEAHGGLAFCSLATLYILEALDQIRDLPGLLHWLANRQMPFEGGYQGRTNKLVDGCYSFWQGAVPALLADVVRQKYGE------------------------------------------------DVPYQ-----------------------CHQEQLQKYILLCGQEISGGLRDKPGKPRDHYHSCYCLSGLSVAQHG--DGK-GEPVVFGDASNLVARTHPAYNIGYDKAMKAIEYF 408          
BLAST of NO06G00620 vs. NCBI_GenBank
Match: XP_002897846.1 (prenyltransferase-like protein, putative [Phytophthora infestans T30-4] >EEY64646.1 prenyltransferase-like protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 353.6 bits (906), Expect = 9.400e-94
Identity = 197/440 (44.77%), Postives = 246/440 (55.91%), Query Frame = 0
Query:   20 LQAAGFFNDDGEVRLLRKQHLDYVMRGLRYLGPGFICLDASRPWLCYWMLHSIDLLKGLETTGEAAHADVDTELLRHVMTTMASCQN--VGGGFGGGTQQLSHCAPTYAAVLALLIVGTEEAYRIIDRPALYRWFLARKH-PSGGFCMHDDGEVDVRGTYTVISIASLLNLLTPELTADVADYLLSCQTYEGGFGGEPGQEAHGGYVFCAFAALVILGRAEE-ADLVSLEGWVARRQMEMEGGFQGRTNKLVDGCYSFWQGAT-AVLVDMVLSGEGEAEEAVGWRGSLGQAQPCSSRPSSPCLQTGDGKDGGSPRLDEVSADDAANISYKTVAIQPSLDVGEHDTPSLGRVPGLNQHALQRYILHCAQALDGGLRDKPGKPRDFYHTCYNLSGLSCAQWGRAGGKGGTALVYGDVGNLLHITNPVYNIRREKVERALRFY 455
            LQ     N D E  L+R++H+ Y+ RGL  L  GF+ LDASRPW+ YW+LH++DLL  L             E    V+ T+  C N  + GGFGGG +QL H A TYA+ L L ++GT EA   +DR  LYR+F++RKH  +G F  HD GEVDVR TY VISIASL  +LT EL   V DY+LSCQTYEGGFGGEPG EAHGGY FC+ AAL IL   ++  DL  L  W+A RQM  EGG+QGRTNKLVDGCYSFWQGA  A+L ++V    G+                                                ++ Y+                        ++  LQ+YIL C Q + GGLRDKPGKPRD YH+CY LSGLS AQ G   GK    +VYGD  NL+  T+P YNI  +K  +A+ ++
Sbjct:   53 LQQLSLVNTDLEPLLMREKHVKYLKRGLTRLPAGFVSLDASRPWIIYWVLHALDLLGAL-----------PEEETDRVIGTLKHCWNDDLDGGFGGGQKQLGHTATTYASCLTLALLGTPEALDTVDRHKLYRFFMSRKHAATGAFTAHDGGEVDVRVTYCVISIASLYGILTDELKTGVVDYILSCQTYEGGFGGEPGNEAHGGYAFCSVAALYILDAVDQIRDLPGLLHWLANRQMPFEGGYQGRTNKLVDGCYSFWQGAVPALLAEVVRERYGD------------------------------------------------DVPYQ-----------------------CHREQLQKYILLCGQEITGGLRDKPGKPRDHYHSCYCLSGLSVAQHGEGRGK---PVVYGDASNLVTRTHPAYNISYDKAMKAIEYF 407          
BLAST of NO06G00620 vs. NCBI_GenBank
Match: XP_008443518.1 (PREDICTED: protein farnesyltransferase subunit beta [Cucumis melo])

HSP 1 Score: 352.4 bits (903), Expect = 2.100e-93
Identity = 191/427 (44.73%), Postives = 248/427 (58.08%), Query Frame = 0
Query:   32 VRLLRKQHLDYVMRGLRYLGPGFICLDASRPWLCYWMLHSIDLLKGLETTGEAAHADVDTELLRHVMTTMASCQNVGGGFGGGTQQLSHCAPTYAAVLALLIVGTEEAYRIIDRPALYRWFLARKHPSGGFCMHDDGEVDVRGTYTVISIASLLNLLTPELTADVADYLLSCQTYEGGFGGEPGQEAHGGYVFCAFAALVILGRAEEADLVSLEGWVARRQMEMEGGFQGRTNKLVDGCYSFWQGATAVLVDMVLSGEGEAEEAVGWRGSLGQAQPCSSRPSSPCLQTGDGKDGGSPRLDEVS--ADDAANISYKTVAIQPSLDVGEHDTPSLGRVPGLNQHALQRYILHCAQALDGGLRDKPGKPRDFYHTCYNLSGLSCAQWGRAGGKGG--TALVYGDVGNLLHITNPVYNIRREKVERALRFY 455
            + L R+ H++Y+  GL +LGP F  LDA+RPW+CYW+LHSI LL      G++    VD EL    +  +  CQ+ GGG+GGG  QL H A TYAAV +L+ +G+ EA   I+R  LY + L  KHPSGGF MHD GE+DVR  YT IS+AS+LN+L  EL  +V +Y+ SCQT+EGG  GEPG EAHGGY FC  A L+++      DL SL  WV  RQ  +E GFQGRTNKLVDGCYSFWQG    L+  +     E              QP             D ++G S   D++S   D +  ++Y  V  +    + +H +      P  N  ALQ+YIL CAQ  +GGLRDKPGKP+D+YHTCY LSGLS  Q+  +          V G   NLL   +P+YN+  E+   AL F+
Sbjct:   42 LELQRENHIEYLTNGLNHLGPSFRVLDANRPWICYWILHSIALL------GDS----VDAELEARAIDFLNRCQDSGGGYGGGPGQLPHLATTYAAVNSLITLGSHEALSSINRHKLYTFLLQMKHPSGGFRMHDQGEIDVRACYTAISVASILNILDDELVQNVGNYIQSCQTFEGGIAGEPGSEAHGGYTFCGLATLILINEVHRLDLRSLLDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCSLLKRLSLDIDEQ-----------SVQP-------------DAREGSS--FDDLSTGVDTSRKVNYNDVGYE---FIKKHPSSQ----PLFNSLALQQYILLCAQVPEGGLRDKPGKPKDYYHTCYCLSGLSLCQYSLSNEDSPPLPQAVAGPYSNLLEPVHPLYNVVFERAIEALDFF 425          
The following BLAST results are available for this feature:
BLAST of NO06G00620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26121.12.500e-17163.31farnesyltransferase beta subunit [Nannochloropsis ... [more]
EWM26122.13.700e-15965.06farnesyltransferase beta subunit [Nannochloropsis ... [more]
CBJ26429.11.000e-11145.75conserved unknown protein [Ectocarpus siliculosus][more]
XP_009035835.11.100e-11048.75hypothetical protein AURANDRAFT_24404 [Aureococcus... [more]
GAX95270.14.500e-9644.30prenyltransferase-like protein, putative [Pythium ... [more]
XP_008902887.13.800e-9545.00hypothetical protein, variant 1 [Phytophthora para... [more]
ETI51129.11.900e-9444.77hypothetical protein, variant 1 [Phytophthora para... [more]
XP_009523088.15.500e-9444.35hypothetical protein PHYSODRAFT_350539 [Phytophtho... [more]
XP_002897846.19.400e-9444.77prenyltransferase-like protein, putative [Phytopht... [more]
XP_008443518.12.100e-9344.73PREDICTED: protein farnesyltransferase subunit bet... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000388NSK000388Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00620.1NO06G00620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100014g62gene4422Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00620.1NO06G00620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00620 ID=NO06G00620|Name=NO06G00620|organism=Nannochloropsis oceanica|type=gene|length=2088bp
ATGTGTGTGCGCCACTTGCGGTCATTGGAGAAGTTGGACGAAgtgagtga
gtgcgtgcatgagaatagtcgcccccctcccttactctctgccttacccc
cccacgtcccagcagcatgccactgcttctgctgcccggggcacgaagcg
ttatgtgatgactctaatcatttgccttattcgtctttagagttccattt
tgcctccgcttcttcattttctttcagagcttgccgtcacgcatcccctc
gctcacattctatccccttcctttcccgttctctgccactgtcacagCAC
GAGGCCTCAGGCCTCCAAGCCGCCGGCTTCTTCAACGACGACGGCGAAGT
GCGCCTCCTCCGAAAGCAGCACCTTGACTATGTCATGCGGGGCCTGCGGT
ACCTGGGGCCGGGCTTTATTTGCCTGGACGCGAGTCGACCCTGGCTGTGT
TACTGGATGCTCCACTCCATCGACCTCCTCAAGGGCCTCGAGACCACGGG
CGAAGCCGCCCACGCAGATGTGGACACGGAGCTCTTAAGACATGTGATGA
CTACCATGGCATCTTGTCAGAACGTCGGTGGAGGGTTTGGTGGGGGGACC
CAGCAGCTGTCGCACTGTGCGCCCACGTATGCAGCGGTGCTTGCCTTGTT
GATTGTGGGCACAGAGGAGGCTTACAGAATCATTGATCGACCCGCGCTTT
ACCGATGGTTCTTGGCTCGCAAGCATCCATCGGGTGGATTCTGCATGCAC
GACGACGGgtacgtgtcaaagtgtcctgcggtagatggttgggagccgca
aaggcacgatgaactgatgaagaagaggaagaaaccgtttatgtattggt
aggtgaagaagtacatgttgtatgtggacaagagtagaagtcctcttctt
tcctcgcctcctcccgcagacaagctcatcccgccccaccccttttcatt
cctgttgctttccgccccgccttatgacagGGAGGTTGACGTCCGCGGCA
CGTACACTGTCATCTCCATCGCCTCCCTCCTCAACCTCCTCACTCCTGAA
CTCACCGCGGACGTAGCCGACTACCTCTTATCCTGCCAGACCTATGAGGG
CGGGTTTGGTGGCGAGCCTGGGCAAGAGGCTCACGGTGGCTATGTTTTCT
GTGCCTTTGCAGCGCTGGTGATCTTGGGGAGGGCGGAGGAGGCAGATCTG
GTGTCGCTGGAAGGGTGGGTGGCCCGAAGGCAGATGGAGATGGAGGGCGG
GTTTCAGGGACGGACGAACAAGCTCGTGGACGGGTGTTACTCGTTCTGGC
AGGGCGCCACGGCCGTGTTGGTGGACATGGTCTTGAGTGGCGAGGGGGAG
GCGGAGGAGGCGGTTGGCTGGAGGGGGTCACTAGGCCAGGCTCAACCTTG
CTCCTCTCGCCCGTCCTCTCCCTGCCTCCAAACCGGCGATGGCAAAGACG
GCGGCTCCCCCCGTCTTGACGAGGTCTCTGCCGACGACGCAGCCAACATC
AGCTATAAGACAGTGGCCATCCAGCCCTCCTTGGACGTCGGCGAGCATGA
CACTCCCTCCCTCGGGCGTGTACCCGGTCTCAACCAGCACGCTCTTCAGA
GATACATTTTGCATTGCGCCCAGGCCCTCGACGGCGGGCTCCGGGACAAA
CCGGGCAAGCCTCGCGACTTCTACCACACTTGCTACAACTTGTCGGGGCT
GAGCTGTGCGCAGTGGGGCCGGGCGGGAGGGAAGGGAGGGACAGCACTCG
TGTATGGTGACGTGGGGAATTTGCTGgtgagtttgacagggcatggacgg
gaggcgggaagaaggaatcgagatgagaagatgatagggtgttcacgaaa
aaggagaccaagggcatatggaaggaggcacgtggattacgcgtcttagg
acgtgtctgacatgcataatcgataggactctgaaccactctcacttctc
tggccttccacttcccatccgctccctcaaccacagCATATTACCAACCC
CGTGTATAACATCCGACGAGAAAAGGTGGAGCGAGCCCTCCGCTTCTACT
ACACTGCACCTGCCTCCCACGGAGCATTACTGTCGTGA
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protein sequence of NO06G00620.1

>NO06G00620.1-protein ID=NO06G00620.1-protein|Name=NO06G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp
MCVRHLRSLEKLDEHEASGLQAAGFFNDDGEVRLLRKQHLDYVMRGLRYL
GPGFICLDASRPWLCYWMLHSIDLLKGLETTGEAAHADVDTELLRHVMTT
MASCQNVGGGFGGGTQQLSHCAPTYAAVLALLIVGTEEAYRIIDRPALYR
WFLARKHPSGGFCMHDDGEVDVRGTYTVISIASLLNLLTPELTADVADYL
LSCQTYEGGFGGEPGQEAHGGYVFCAFAALVILGRAEEADLVSLEGWVAR
RQMEMEGGFQGRTNKLVDGCYSFWQGATAVLVDMVLSGEGEAEEAVGWRG
SLGQAQPCSSRPSSPCLQTGDGKDGGSPRLDEVSADDAANISYKTVAIQP
SLDVGEHDTPSLGRVPGLNQHALQRYILHCAQALDGGLRDKPGKPRDFYH
TCYNLSGLSCAQWGRAGGKGGTALVYGDVGNLLHITNPVYNIRREKVERA
LRFYYTAPASHGALLS*
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Synonyms
Publications