NO06G00550, NO06G00550 (gene) Nannochloropsis oceanica

Overview
NameNO06G00550
Unique NameNO06G00550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length540
Alignment locationchr6:220225..220764 +

Link to JBrowse

Properties
Property NameValue
DescriptionKinesin-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:220225..220764 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001849PH_domain
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
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BLAST of NO06G00550 vs. NCBI_GenBank
Match: EWM26127.1 (kinesin-like protein kif13a [Nannochloropsis gaditana])

HSP 1 Score: 159.1 bits (401), Expect = 1.300e-35
Identity = 81/176 (46.02%), Postives = 119/176 (67.61%), Query Frame = 0 
Query:    8 SPMSP-SLTLAYTRTMHRPNVFSSTLKRIPGLKDGLNAPSSPFQQHGKVLLEGFLLKRGQLTGVYQRRWFMVRASTLSWYLRYNDEESLRGVLHLKGYVFEPAPVEEAERGVPYGFLMRKEGEGFARVHTLQASSKDEQVKWMHCLGSAALAEKD-EGKQEEPVRRK--KAQCAIM 180
            +P SP   + +++   + P + S+ L++IPG+KDGLN P S FQ+ G    EGFL KRGQ+TG YQRRWF+VRA  L WY+RY D++S+RG + L  + FEP+   +AERG+PYG +++K+ +  ARVHTLQASS+ E+ KW+  +  A+  +KD E    EP+++     QC +M
Sbjct:  733 APASPLDTSFSFSIKTNHPMISSTDLEKIPGIKDGLNLPVSSFQE-GAASFEGFLFKRGQITGFYQRRWFVVRAGRLLWYVRYEDDQSIRGAIDLAEFTFEPS--TDAERGLPYGIVLKKKNDPSARVHTLQASSQSEREKWLRSMHIASRMDKDVEDSLREPLKKMLVAGQCFLM 905
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BLAST of NO06G00550 vs. NCBI_GenBank
Match: PVD33061.1 (hypothetical protein C0Q70_08509 [Pomacea canaliculata])

HSP 1 Score: 63.5 bits (153), Expect = 7.500e-7
Identity = 37/98 (37.76%), Postives = 54/98 (55.10%), Query Frame = 0 
Query:   58 EGFLLKRGQLTGVYQRRWFMVRASTLSWYLRYNDEESLRGVLHLKGYVFEPAPVEEAERGVPYGFLMRKEGEGFARVHTLQASSKDEQVKWMHCLGSA 156
            EGFLLKRG L   +QRRWF+++ + L +Y +  D+E + G++ L+G   E A  E+ +    Y F +   G G  R + L A S+D    WM  L  A
Sbjct:   22 EGFLLKRGDLNRGFQRRWFVLKGNLLFYYEKRTDKEPV-GMIILEGCTIELAECEDVDN---YAFQISFSGSG-TRTYVLCADSQDAMEAWMKALSCA 114
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BLAST of NO06G00550 vs. NCBI_GenBank
Match: XP_003738475.1 (PREDICTED: sesquipedalian-1 [Galendromus occidentalis])

HSP 1 Score: 63.2 bits (152), Expect = 9.800e-7
Identity = 38/98 (38.78%), Postives = 59/98 (60.20%), Query Frame = 0 
Query:   58 EGFLLKRGQLTGVYQRRWFMVRASTLSWYLRYNDEESLRGVLHLKGYVFEPAPVEEAERGVPYGFLMRKEGEGFARVHTLQASSKDEQVKWMHCLGSA 156
            +G+LLKRG++   +Q+RWF++R + L +Y    D E + G++ L+G   E A   E ER   Y FL+   G G AR++T+ A+S+D+   WM  L  A
Sbjct:   21 QGWLLKRGEVNKNFQKRWFVLRGNML-FYFEKPDREPV-GLIVLEGCSIELAECSETER---YAFLVIFHGPG-ARIYTMAANSQDDMEGWMKALSCA 112
The following BLAST results are available for this feature:
BLAST of NO06G00550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM26127.11.300e-3546.02kinesin-like protein kif13a [Nannochloropsis gadit... [more]
PVD33061.17.500e-737.76hypothetical protein C0Q70_08509 [Pomacea canalicu... [more]
XP_003738475.19.800e-738.78PREDICTED: sesquipedalian-1 [Galendromus occidenta... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00550.1NO06G00550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00550.1NO06G00550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00550 ID=NO06G00550|Name=NO06G00550|organism=Nannochloropsis oceanica|type=gene|length=540bp
ATGTCCTCTCATTCCTCCCCCTCCCCAATGAGCCCCTCCCTCACCCTTGC
CTACACTAGGACGATGCATCGCCCCAACGTGTTCTCCAGCACCCTCAAGA
GGATCCCTGGGCTGAAGGACGGGCTCAATGCCCCTTCCTCTCCGTTCCAG
CAACATGGCAAAGTCCTCCTCGAGGGCTTTCTGTTAAAGCGGGGGCAGCT
GACAGGCGTGTACCAACGCCGATGGTTCATGGTGCGCGCGTCAACGTTAT
CGTGGTACCTGAGGTACAATGACGAGGAGTCCCTTCGCGGTGTCCTTCAT
TTGAAGGGCTATGTCTTCGAGCCTGCCCCAGTGGAAGAGGCGGAGAGGGG
AGTTCCGTATGGGTTTTTGATGCGGAAGGAGGGGGAGGGGTTTGCACGGG
TGCATACTCTGCAGGCATCGTCAAAGGATGAGCAGGTGAAGTGGATGCAT
TGTTTGGGGAGCGCGGCTTTGGCGGAAAAGGATGAGGGAAAGCAGGAGGA
GCCTGTGAGGAGGAAGAAAGCGCAATGTGCGATTATGTGA
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protein sequence of NO06G00550.1

>NO06G00550.1-protein ID=NO06G00550.1-protein|Name=NO06G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MSSHSSPSPMSPSLTLAYTRTMHRPNVFSSTLKRIPGLKDGLNAPSSPFQ
QHGKVLLEGFLLKRGQLTGVYQRRWFMVRASTLSWYLRYNDEESLRGVLH
LKGYVFEPAPVEEAERGVPYGFLMRKEGEGFARVHTLQASSKDEQVKWMH
CLGSAALAEKDEGKQEEPVRRKKAQCAIM*
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Synonyms
Publications