NO06G00550.1, NO06G00550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00550.1
Unique NameNO06G00550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length540
Alignment locationchr6:220225..220764 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:220225..220764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00550.1 vs.
Match: EWM26127.1 (kinesin-like protein kif13a [Nannochloropsis gaditana])

HSP 1 Score: 159.5 bits (402), Expect = 1.000e-35
Identity = 81/176 (46.02%), Postives = 119/176 (67.61%), Query Frame = 0 
Query:    8 SPMSP-SLTLAYTRTMHRPNVFSSTLKRIPGLKDGLNAPSSPFQQHGKVLLEGFLLKRGQLTGVYQRRWFMVRASTLSWYLRYNDEESLRGVLHLKGYVFEPAPVEEAERGVPYGFLMRKEGEGFARVHTLQASSKDEQVKWMHCLGSAALAEKD-EGKQEEPVRRK--KAQCAIM 180
            +P SP   + +++   + P + S+ L++IPG+KDGLN P S FQ+ G    EGFL KRGQ+TG YQRRWF+VRA  L WY+RY D++S+RG + L  + FEP+   +AERG+PYG +++K+ +  ARVHTLQASS+ E+ KW+  +  A+  +KD E    EP+++     QC +M
Sbjct:  733 APASPLDTSFSFSIKTNHPMISSTDLEKIPGIKDGLNLPVSSFQE-GAASFEGFLFKRGQITGFYQRRWFVVRAGRLLWYVRYEDDQSIRGAIDLAEFTFEPST--DAERGLPYGIVLKKKNDPSARVHTLQASSQSEREKWLRSMHIASRMDKDVEDSLREPLKKMLVAGQCFLM 905
The following BLAST results are available for this feature:
BLAST of NO06G00550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26127.11.000e-3546.02kinesin-like protein kif13a [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00550NO06G00550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00550.1NO06G00550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00550.1.cds1NO06G00550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00550.1 ID=NO06G00550.1|Name=NO06G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=540bp
ATGTCCTCTCATTCCTCCCCCTCCCCAATGAGCCCCTCCCTCACCCTTGC
CTACACTAGGACGATGCATCGCCCCAACGTGTTCTCCAGCACCCTCAAGA
GGATCCCTGGGCTGAAGGACGGGCTCAATGCCCCTTCCTCTCCGTTCCAG
CAACATGGCAAAGTCCTCCTCGAGGGCTTTCTGTTAAAGCGGGGGCAGCT
GACAGGCGTGTACCAACGCCGATGGTTCATGGTGCGCGCGTCAACGTTAT
CGTGGTACCTGAGGTACAATGACGAGGAGTCCCTTCGCGGTGTCCTTCAT
TTGAAGGGCTATGTCTTCGAGCCTGCCCCAGTGGAAGAGGCGGAGAGGGG
AGTTCCGTATGGGTTTTTGATGCGGAAGGAGGGGGAGGGGTTTGCACGGG
TGCATACTCTGCAGGCATCGTCAAAGGATGAGCAGGTGAAGTGGATGCAT
TGTTTGGGGAGCGCGGCTTTGGCGGAAAAGGATGAGGGAAAGCAGGAGGA
GCCTGTGAGGAGGAAGAAAGCGCAATGTGCGATTATGTGA
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protein sequence of NO06G00550.1

>NO06G00550.1-protein ID=NO06G00550.1-protein|Name=NO06G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MSSHSSPSPMSPSLTLAYTRTMHRPNVFSSTLKRIPGLKDGLNAPSSPFQ
QHGKVLLEGFLLKRGQLTGVYQRRWFMVRASTLSWYLRYNDEESLRGVLH
LKGYVFEPAPVEEAERGVPYGFLMRKEGEGFARVHTLQASSKDEQVKWMH
CLGSAALAEKDEGKQEEPVRRKKAQCAIM*
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mRNA from alignment at chr6:220225..220764+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00550.1 ID=NO06G00550.1|Name=NO06G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=540bp|location=Sequence derived from alignment at chr6:220225..220764+ (Nannochloropsis oceanica)
ATGTCCTCTCATTCCTCCCCCTCCCCAATGAGCCCCTCCCTCACCCTTGC
CTACACTAGGACGATGCATCGCCCCAACGTGTTCTCCAGCACCCTCAAGA
GGATCCCTGGGCTGAAGGACGGGCTCAATGCCCCTTCCTCTCCGTTCCAG
CAACATGGCAAAGTCCTCCTCGAGGGCTTTCTGTTAAAGCGGGGGCAGCT
GACAGGCGTGTACCAACGCCGATGGTTCATGGTGCGCGCGTCAACGTTAT
CGTGGTACCTGAGGTACAATGACGAGGAGTCCCTTCGCGGTGTCCTTCAT
TTGAAGGGCTATGTCTTCGAGCCTGCCCCAGTGGAAGAGGCGGAGAGGGG
AGTTCCGTATGGGTTTTTGATGCGGAAGGAGGGGGAGGGGTTTGCACGGG
TGCATACTCTGCAGGCATCGTCAAAGGATGAGCAGGTGAAGTGGATGCAT
TGTTTGGGGAGCGCGGCTTTGGCGGAAAAGGATGAGGGAAAGCAGGAGGA
GCCTGTGAGGAGGAAGAAAGCGCAATGTGCGATTATGTGA
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Coding sequence (CDS) from alignment at chr6:220225..220764+

>NO06G00550.1 ID=NO06G00550.1|Name=NO06G00550.1|organism=Nannochloropsis oceanica|type=CDS|length=540bp|location=Sequence derived from alignment at chr6:220225..220764+ (Nannochloropsis oceanica)
ATGTCCTCTCATTCCTCCCCCTCCCCAATGAGCCCCTCCCTCACCCTTGC
CTACACTAGGACGATGCATCGCCCCAACGTGTTCTCCAGCACCCTCAAGA
GGATCCCTGGGCTGAAGGACGGGCTCAATGCCCCTTCCTCTCCGTTCCAG
CAACATGGCAAAGTCCTCCTCGAGGGCTTTCTGTTAAAGCGGGGGCAGCT
GACAGGCGTGTACCAACGCCGATGGTTCATGGTGCGCGCGTCAACGTTAT
CGTGGTACCTGAGGTACAATGACGAGGAGTCCCTTCGCGGTGTCCTTCAT
TTGAAGGGCTATGTCTTCGAGCCTGCCCCAGTGGAAGAGGCGGAGAGGGG
AGTTCCGTATGGGTTTTTGATGCGGAAGGAGGGGGAGGGGTTTGCACGGG
TGCATACTCTGCAGGCATCGTCAAAGGATGAGCAGGTGAAGTGGATGCAT
TGTTTGGGGAGCGCGGCTTTGGCGGAAAAGGATGAGGGAAAGCAGGAGGA
GCCTGTGAGGAGGAAGAAAGCGCAATGTGCGATTATGTGA
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Synonyms
Publications