NO06G00500, NO06G00500 (gene) Nannochloropsis oceanica

Overview
NameNO06G00500
Unique NameNO06G00500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2613
Alignment locationchr6:205503..208115 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:205503..208115 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006461PLAC_motif_containing
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO06G00500 vs. NCBI_GenBank
Match: EWM26092.1 (Uncharacterized protein family Cys-rich [Nannochloropsis gaditana])

HSP 1 Score: 66.6 bits (161), Expect = 1.000e-7
Identity = 46/96 (47.92%), Postives = 50/96 (52.08%), Query Frame = 0 
Query:   90 RSLGSGFELVELQQQHVPGHCGLECPPLVLQLSPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDRELPPEDEWRDGVCGCFRGFGTWS 186
            RS GSGFELVEL   H+PGH    CPP + Q SPT                   XXXXXX          GD+ELPPED WRDG+  CF GFG  S
Sbjct:   33 RSFGSGFELVEL--HHIPGH----CPPFMSQTSPT------VVVMDLESRKGREXXXXXXCNASSASSCSGDKELPPEDAWRDGLFDCFSGFGVIS 116
The following BLAST results are available for this feature:
BLAST of NO06G00500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26092.11.000e-747.92Uncharacterized protein family Cys-rich [Nannochlo... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000402NSK000402Nannochloropsis salina (N. salina CCMP1776)gene


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100014g77gene4436Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00500.3NO06G00500.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO06G00500.2NO06G00500.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO06G00500.1NO06G00500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00500.3NO06G00500.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO06G00500.2NO06G00500.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO06G00500.1NO06G00500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00500 ID=NO06G00500|Name=NO06G00500|organism=Nannochloropsis oceanica|type=gene|length=2613bp
TAAGAGCAGAAGATGCAGTGGCACGAACAAGTGAAAGCAAGTGAGGCGTG
CTGGCATGCCCTGAAACCCGAGGGAAACTTATGAAATCTCCCATTTTTGA
TGAAGAACAACAACCTCCTACTCTCTCCTGACCGGTTTCTCGACAGCCGT
TGGGCGTGACTCACGAGCCGTTTCACCAAACGACTGTCTGTCTGCCCCGC
AAGGAACTCGTTCCTTAATTGGTCGCTTCCTCTGTCTTCCTGGTTGTTCC
TTCTGACATACAACCCCTGAACTAGTGGTTGGACATTTTGCGATTTAACA
TGGTCTTTCTCTTTTCATCTTTCCTCTCACAGCACGTCCTCGGCCACGAG
CGGCATCAACACCACTGCTAGCGTTCCTGGCAACTGCAATTATTCCGATC
TGTCGAAGCGGTGCACCTTTTCTTCTCCTTTCTCCTTGGTCCTCATCCTT
ATGGCCGAGAGCAGTACTGATCCCTGCAATGGTGGTGGAAGTGGTAGTGG
CAGCGATTTGGACCTGGAAGAGGGCATGCAGCACGTCGGCAGCAGCTCAG
ACCTGCGCCCCACAAAGAGCGTTTCTCCGTCTCACGACGTAAATAAGTCC
AGCGCTCCTGACGGTAAATAAACGAGTGTGAGCACCGGAAGAGGCTTACA
AGGATGTGCTTGTGTTCGGCAGACAATCACATATAAGTTGCTCACACGCG
GCTGCTTCCCCGTCCAACCACAACCAACAGCTGGGTACAGCCCGACGTCC
ACGATCTCCACGGCCTTTTCCAGCGATGGCGAGAAGGAAAAGTACCTTGG
CAAAGTGCCCCGCAAAGAGCATCGGAAGGTAGGTGGGATGGGCGGGTATG
GACGAGGTGGTGCTTGAACGCTTATGAAGGAGCTACTTACTACTGGTAGG
ACGGCGTCCTTTCTTCTACAAAAACAGGTCAACATAGACCACTTTCCGCT
TACAACCCACTCTAAATTCACGTACTCTCTGCTCACACTCCCCCGGTCCA
TCCTTTCCTCCTCTTCAGATGACCCGCTCCCTCGGCTCGGGCTTCGAGCT
GGTGGAGCTGCAGCAACAACATGTCCCCGGCCACTGCGGCCTGGAGTGCC
CTCCTCTCGTCCTGCAACTCTCTCCCACCGGCGGTGGAGGAGGAAGTGGG
GAACGAGGGTCTGTTGGCTCGATCGATGAGCATGATTATGCGTCCGCTGT
GTCATCCGCACCCTCCTCCTCCTCGTCCATCAGTGGGGATAGGGAGCTAC
CTCCGGAAGATGAATGGCGGGATGGTGTGTGTGGATGCTTCAGGGGCTTT
Ggtacgtggagtgaagggaaagatgacggagggaggagaaggagattcgt
gtccctgctctatcttgttgcatgattcgactatgcctgttaatttatcg
tcccattcccttttgacatacctttcaccgatcaccagGTCTGACTGCCT
GTTTTGCCACCAGTTATGCCCAAACTAGCATCATGGAGGAGCTCAACAGC
CACACCGCGACTCGGCGCCTGGTCCTTCTGCTCACTGTCTCTCTTCTTTG
GCTCACGCTCCCCTTCACCCTCTACCTGAAGCTCTACCCGCTTTCCCTGG
CCGCGGTGTGTGCTGTGTGGGTGATAGAGGCAGCCGTGGCCTGTCACTTA
CGTCGATTAGTGCGACGGCGGTACAGCATCGACGGGAGCGAGGGAGGGGA
TTGTGTCATCAGCTTCTGCATGCCTGTGTGTGTGACTGCGCAGATTTTGA
GGCACCTGAGAGGGTGAGGGAGGCGGGGGGAAAGGGAGGAAGGTGGGCAT
GGGTGGTAAGAGAAGGGGAGAAGATGAATTTCTACTCATGGCATGTCCCA
GGGTTTGCAATATTTCAAACATGGAGGAAGAATAAAAAGTAGGTGTATGT
TTAAATAAAAAAGGGAACAGGAGACAGTGCTCCTACTACAATGGAAAGAC
AGAAAGCATGGCCGGATGGCTGTGTGGACTGAGTGATATTACTAATTGAT
AGGGGGGGAGAAGAAAATAGAGTGTAAATTAGGGTACAGGGTAAGGGAGA
GACCATATGGGAGGGACTTCCACATCAGCAAACAAACAAAAGTGAGTGTC
AGACAGAGCATGCTATGATCACTCTGTCAATAGACGTCTGCGTGGTGCGT
AAGACGGTACTTCTGAAAGAGATGATACTACTTCTAGGGGTAATACTACT
GATTGAGAGCAGAAAGGGACGAATATGAATATGGAGTCTGATACAGAGGA
AACCGATCGACGCACAAGCAAGTCAACTGTGACCGTGGGTCGCACAGATG
TAACCTGGTCGAAGGGTAATATTATAATATTCGAGAGGGCAAAAGGGCTA
TGGAATAAATCAGGACACTACCTAGAAAGGGTAGGAAGAGAAAAGGCTCG
AACCATGGTACAAATCGAATTGGGCGATACCTTGTCGTCAGAGAGTGGGT
ATATAAGTAGCATCCACCGTACAGTATAACAAAGAAATCAAAATTAAGCG
GAATGTCCAAACGACCTGAGGAGGTCATGCCCAGACTCCATTTGTATATA
AAAAGCGTCTGTGGGCTTTGTTAGCTTTGCGGTGCTGTCTCGCCCGCCCT
CGACTTCCGCACC
back to top

protein sequence of NO06G00500.3

>NO06G00500.3-protein ID=NO06G00500.3-protein|Name=NO06G00500.3|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MTRSLGSGFELVELQQQHVPGHCGLECPPLVLQLSPTGGGGGSGERGSVG
SIDEHDYASAVSSAPSSSSSISGDRELPPEDEWRDGVCGCFRGFGLTACF
ATSYAQTSIMEELNSHTATRRLVLLLTVSLLWLTLPFTLYLKLYPLSLAA
VCAVWVIEAAVACHLRRLVRRRYSIDGSEGGDCVISFCMPVCVTAQILRH
LRG*
back to top

protein sequence of NO06G00500.2

>NO06G00500.2-protein ID=NO06G00500.2-protein|Name=NO06G00500.2|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MAESSTDPCNGGGSGSGSDLDLEEGMQHVGSSSDLRPTKSVSPSHDVNKS
SAPDAGYSPTSTISTAFSSDGEKEKYLGKVPRKEHRKMTRSLGSGFELVE
LQQQHVPGHCGLECPPLVLQLSPTGGGGGSGERGSVGSIDEHDYASAVSS
APSSSSSISGDRELPPEDEWRDGVCGCFRGFGTWSEGKDDGGRRRRFVSL
LYLVA*
back to top

protein sequence of NO06G00500.1

>NO06G00500.1-protein ID=NO06G00500.1-protein|Name=NO06G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MAESSTDPCNGGGSGSGSDLDLEEGMQHVGSSSDLRPTKSVSPSHDVNKS
SAPDAGYSPTSTISTAFSSDGEKEKYLGKVPRKEHRKMTRSLGSGFELVE
LQQQHVPGHCGLECPPLVLQLSPTGGGGGSGERGSVGSIDEHDYASAVSS
APSSSSSISGDRELPPEDEWRDGVCGCFRGFGLTACFATSYAQTSIMEEL
NSHTATRRLVLLLTVSLLWLTLPFTLYLKLYPLSLAAVCAVWVIEAAVAC
HLRRLVRRRYSIDGSEGGDCVISFCMPVCVTAQILRHLRG*
back to top
Synonyms
Publications