NO06G00500.2, NO06G00500.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00500.2
Unique NameNO06G00500.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1978
Alignment locationchr6:205503..207787 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:205503..207787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00500.2 vs.
Match: EWM26092.1 (Uncharacterized protein family Cys-rich [Nannochloropsis gaditana])

HSP 1 Score: 78.2 bits (191), Expect = 3.400e-11
Identity = 49/96 (51.04%), Postives = 56/96 (58.33%), Query Frame = 0 
Query:   90 RSLGSGFELVELQQQHVPGHCGLECPPLVLQLSPTGGGGGSGERGSVGSIDEHDYASAVSSAPSSSSSISGDRELPPEDEWRDGVCGCFRGFGTWS 186
            RS GSGFELVEL   H+PGHC    PP + Q SPT        R    S + HD  +      SS+SS SGD+ELPPED WRDG+  CF GFG  S
Sbjct:   33 RSFGSGFELVELH--HIPGHC----PPFMSQTSPTVVVMDLESRKGRESREGHDCNA------SSASSCSGDKELPPEDAWRDGLFDCFSGFGVIS 116
The following BLAST results are available for this feature:
BLAST of NO06G00500.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26092.13.400e-1151.04Uncharacterized protein family Cys-rich [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00500NO06G00500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00500.2NO06G00500.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00500.2.cds1NO06G00500.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00500.2.cds2NO06G00500.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00500.2.cds3NO06G00500.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00500.2 ID=NO06G00500.2|Name=NO06G00500.2|organism=Nannochloropsis oceanica|type=mRNA|length=1978bp
ACAGCACGTCCTCGGCCACGAGCGGCATCAACACCACTGCTAGCGTTCCT
GGCAACTGCAATTATTCCGATCTGTCGAAGCGGTGCACCTTTTCTTCTCC
TTTCTCCTTGGTCCTCATCCTTATGGCCGAGAGCAGTACTGATCCCTGCA
ATGGTGGTGGAAGTGGTAGTGGCAGCGATTTGGACCTGGAAGAGGGCATG
CAGCACGTCGGCAGCAGCTCAGACCTGCGCCCCACAAAGAGCGTTTCTCC
GTCTCACGACGTAAATAAGTCCAGCGCTCCTGACGCTGGGTACAGCCCGA
CGTCCACGATCTCCACGGCCTTTTCCAGCGATGGCGAGAAGGAAAAGTAC
CTTGGCAAAGTGCCCCGCAAAGAGCATCGGAAGATGACCCGCTCCCTCGG
CTCGGGCTTCGAGCTGGTGGAGCTGCAGCAACAACATGTCCCCGGCCACT
GCGGCCTGGAGTGCCCTCCTCTCGTCCTGCAACTCTCTCCCACCGGCGGT
GGAGGAGGAAGTGGGGAACGAGGGTCTGTTGGCTCGATCGATGAGCATGA
TTATGCGTCCGCTGTGTCATCCGCACCCTCCTCCTCCTCGTCCATCAGTG
GGGATAGGGAGCTACCTCCGGAAGATGAATGGCGGGATGGTGTGTGTGGA
TGCTTCAGGGGCTTTGGTACGTGGAGTGAAGGGAAAGATGACGGAGGGAG
GAGAAGGAGATTCGTGTCCCTGCTCTATCTTGTTGCATGATTCGACTATG
CCTGTTAATTTATCGTCCCATTCCCTTTTGACATACCTTTCACCGATCAC
CAGGTCTGACTGCCTGTTTTGCCACCAGTTATGCCCAAACTAGCATCATG
GAGGAGCTCAACAGCCACACCGCGACTCGGCGCCTGGTCCTTCTGCTCAC
TGTCTCTCTTCTTTGGCTCACGCTCCCCTTCACCCTCTACCTGAAGCTCT
ACCCGCTTTCCCTGGCCGCGGTGTGTGCTGTGTGGGTGATAGAGGCAGCC
GTGGCCTGTCACTTACGTCGATTAGTGCGACGGCGGTACAGCATCGACGG
GAGCGAGGGAGGGGATTGTGTCATCAGCTTCTGCATGCCTGTGTGTGTGA
CTGCGCAGATTTTGAGGCACCTGAGAGGGTGAGGGAGGCGGGGGGAAAGG
GAGGAAGGTGGGCATGGGTGGTAAGAGAAGGGGAGAAGATGAATTTCTAC
TCATGGCATGTCCCAGGGTTTGCAATATTTCAAACATGGAGGAAGAATAA
AAAGTAGGTGTATGTTTAAATAAAAAAGGGAACAGGAGACAGTGCTCCTA
CTACAATGGAAAGACAGAAAGCATGGCCGGATGGCTGTGTGGACTGAGTG
ATATTACTAATTGATAGGGGGGGAGAAGAAAATAGAGTGTAAATTAGGGT
ACAGGGTAAGGGAGAGACCATATGGGAGGGACTTCCACATCAGCAAACAA
ACAAAAGTGAGTGTCAGACAGAGCATGCTATGATCACTCTGTCAATAGAC
GTCTGCGTGGTGCGTAAGACGGTACTTCTGAAAGAGATGATACTACTTCT
AGGGGTAATACTACTGATTGAGAGCAGAAAGGGACGAATATGAATATGGA
GTCTGATACAGAGGAAACCGATCGACGCACAAGCAAGTCAACTGTGACCG
TGGGTCGCACAGATGTAACCTGGTCGAAGGGTAATATTATAATATTCGAG
AGGGCAAAAGGGCTATGGAATAAATCAGGACACTACCTAGAAAGGGTAGG
AAGAGAAAAGGCTCGAACCATGGTACAAATCGAATTGGGCGATACCTTGT
CGTCAGAGAGTGGGTATATAAGTAGCATCCACCGTACAGTATAACAAAGA
AATCAAAATTAAGCGGAATGTCCAAACGACCTGAGGAGGTCATGCCCAGA
CTCCATTTGTATATAAAAAGCGTCTGTGGGCTTTGTTAGCTTTGCGGTGC
TGTCTCGCCCGCCCTCGACTTCCGCACC
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protein sequence of NO06G00500.2

>NO06G00500.2-protein ID=NO06G00500.2-protein|Name=NO06G00500.2|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MAESSTDPCNGGGSGSGSDLDLEEGMQHVGSSSDLRPTKSVSPSHDVNKS
SAPDAGYSPTSTISTAFSSDGEKEKYLGKVPRKEHRKMTRSLGSGFELVE
LQQQHVPGHCGLECPPLVLQLSPTGGGGGSGERGSVGSIDEHDYASAVSS
APSSSSSISGDRELPPEDEWRDGVCGCFRGFGTWSEGKDDGGRRRRFVSL
LYLVA*
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mRNA from alignment at chr6:205503..207787-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00500.2 ID=NO06G00500.2|Name=NO06G00500.2|organism=Nannochloropsis oceanica|type=mRNA|length=2285bp|location=Sequence derived from alignment at chr6:205503..207787- (Nannochloropsis oceanica)
ACAGCACGTCCTCGGCCACGAGCGGCATCAACACCACTGCTAGCGTTCCT
GGCAACTGCAATTATTCCGATCTGTCGAAGCGGTGCACCTTTTCTTCTCC
TTTCTCCTTGGTCCTCATCCTTATGGCCGAGAGCAGTACTGATCCCTGCA
ATGGTGGTGGAAGTGGTAGTGGCAGCGATTTGGACCTGGAAGAGGGCATG
CAGCACGTCGGCAGCAGCTCAGACCTGCGCCCCACAAAGAGCGTTTCTCC
GTCTCACGACGTAAATAAGTCCAGCGCTCCTGACGGTAAATAAACGAGTG
TGAGCACCGGAAGAGGCTTACAAGGATGTGCTTGTGTTCGGCAGACAATC
ACATATAAGTTGCTCACACGCGGCTGCTTCCCCGTCCAACCACAACCAAC
AGCTGGGTACAGCCCGACGTCCACGATCTCCACGGCCTTTTCCAGCGATG
GCGAGAAGGAAAAGTACCTTGGCAAAGTGCCCCGCAAAGAGCATCGGAAG
GTAGGTGGGATGGGCGGGTATGGACGAGGTGGTGCTTGAACGCTTATGAA
GGAGCTACTTACTACTGGTAGGACGGCGTCCTTTCTTCTACAAAAACAGG
TCAACATAGACCACTTTCCGCTTACAACCCACTCTAAATTCACGTACTCT
CTGCTCACACTCCCCCGGTCCATCCTTTCCTCCTCTTCAGATGACCCGCT
CCCTCGGCTCGGGCTTCGAGCTGGTGGAGCTGCAGCAACAACATGTCCCC
GGCCACTGCGGCCTGGAGTGCCCTCCTCTCGTCCTGCAACTCTCTCCCAC
CGGCGGTGGAGGAGGAAGTGGGGAACGAGGGTCTGTTGGCTCGATCGATG
AGCATGATTATGCGTCCGCTGTGTCATCCGCACCCTCCTCCTCCTCGTCC
ATCAGTGGGGATAGGGAGCTACCTCCGGAAGATGAATGGCGGGATGGTGT
GTGTGGATGCTTCAGGGGCTTTGGTACGTGGAGTGAAGGGAAAGATGACG
GAGGGAGGAGAAGGAGATTCGTGTCCCTGCTCTATCTTGTTGCATGATTC
GACTATGCCTGTTAATTTATCGTCCCATTCCCTTTTGACATACCTTTCAC
CGATCACCAGGTCTGACTGCCTGTTTTGCCACCAGTTATGCCCAAACTAG
CATCATGGAGGAGCTCAACAGCCACACCGCGACTCGGCGCCTGGTCCTTC
TGCTCACTGTCTCTCTTCTTTGGCTCACGCTCCCCTTCACCCTCTACCTG
AAGCTCTACCCGCTTTCCCTGGCCGCGGTGTGTGCTGTGTGGGTGATAGA
GGCAGCCGTGGCCTGTCACTTACGTCGATTAGTGCGACGGCGGTACAGCA
TCGACGGGAGCGAGGGAGGGGATTGTGTCATCAGCTTCTGCATGCCTGTG
TGTGTGACTGCGCAGATTTTGAGGCACCTGAGAGGGTGAGGGAGGCGGGG
GGAAAGGGAGGAAGGTGGGCATGGGTGGTAAGAGAAGGGGAGAAGATGAA
TTTCTACTCATGGCATGTCCCAGGGTTTGCAATATTTCAAACATGGAGGA
AGAATAAAAAGTAGGTGTATGTTTAAATAAAAAAGGGAACAGGAGACAGT
GCTCCTACTACAATGGAAAGACAGAAAGCATGGCCGGATGGCTGTGTGGA
CTGAGTGATATTACTAATTGATAGGGGGGGAGAAGAAAATAGAGTGTAAA
TTAGGGTACAGGGTAAGGGAGAGACCATATGGGAGGGACTTCCACATCAG
CAAACAAACAAAAGTGAGTGTCAGACAGAGCATGCTATGATCACTCTGTC
AATAGACGTCTGCGTGGTGCGTAAGACGGTACTTCTGAAAGAGATGATAC
TACTTCTAGGGGTAATACTACTGATTGAGAGCAGAAAGGGACGAATATGA
ATATGGAGTCTGATACAGAGGAAACCGATCGACGCACAAGCAAGTCAACT
GTGACCGTGGGTCGCACAGATGTAACCTGGTCGAAGGGTAATATTATAAT
ATTCGAGAGGGCAAAAGGGCTATGGAATAAATCAGGACACTACCTAGAAA
GGGTAGGAAGAGAAAAGGCTCGAACCATGGTACAAATCGAATTGGGCGAT
ACCTTGTCGTCAGAGAGTGGGTATATAAGTAGCATCCACCGTACAGTATA
ACAAAGAAATCAAAATTAAGCGGAATGTCCAAACGACCTGAGGAGGTCAT
GCCCAGACTCCATTTGTATATAAAAAGCGTCTGTGGGCTTTGTTAGCTTT
GCGGTGCTGTCTCGCCCGCCCTCGACTTCCGCACC
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Coding sequence (CDS) from alignment at chr6:205503..207787-

>NO06G00500.2 ID=NO06G00500.2|Name=NO06G00500.2|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at chr6:205503..207787- (Nannochloropsis oceanica)
ATGGCCGAGAGCAGTACTGATCCCTGCAATGGTGGTGGAAGTGGTAGTGG
CAGCGATTTGGACCTGGAAGAGGGCATGCAGCACGTCGGCAGCAGCTCAG
ACCTGCGCCCCACAAAGAGCGTTTCTCCGTCTCACGACGTAAATAAGTCC
AGCGCTCCTGACGCTGGGTACAGCCCGACGTCCACGATCTCCACGGCCTT
TTCCAGCGATGGCGAGAAGGAAAAGTACCTTGGCAAAGTGCCCCGCAAAG
AGCATCGGAAGATGACCCGCTCCCTCGGCTCGGGCTTCGAGCTGGTGGAG
CTGCAGCAACAACATGTCCCCGGCCACTGCGGCCTGGAGTGCCCTCCTCT
CGTCCTGCAACTCTCTCCCACCGGCGGTGGAGGAGGAAGTGGGGAACGAG
GGTCTGTTGGCTCGATCGATGAGCATGATTATGCGTCCGCTGTGTCATCC
GCACCCTCCTCCTCCTCGTCCATCAGTGGGGATAGGGAGCTACCTCCGGA
AGATGAATGGCGGGATGGTGTGTGTGGATGCTTCAGGGGCTTTGGTACGT
GGAGTGAAGGGAAAGATGACGGAGGGAGGAGAAGGAGATTCGTGTCCCTG
CTCTATCTTGTTGCATGA
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Synonyms
Publications