NO05G05450, NO05G05450 (gene) Nannochloropsis oceanica

Overview
NameNO05G05450
Unique NameNO05G05450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length950
Alignment locationchr5:1469666..1470615 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1469666..1470615 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO05G05450 vs. NCBI_GenBank
Match: EWM20958.1 (hypothetical protein Naga_101659g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 67.8 bits (164), Expect = 5.400e-8
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 0 
Query:   56 SAKEYAIGVQVVSGVLGVASLTAMAVHHIDQREIKRVEGERAAEIKSA 104
            +A   ++G+Q+V GVLGVAS TA+AVHH+DQREI RVEGERAAEIK A
Sbjct:   58 TAMVISVGLQIVVGVLGVASFTAVAVHHLDQREIMRVEGERAAEIKLA 105
The following BLAST results are available for this feature:
BLAST of NO05G05450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20958.15.400e-870.83hypothetical protein Naga_101659g2, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR027ncniR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G05450.1NO05G05450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651305gene_11945Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G05450.1NO05G05450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G05450 ID=NO05G05450|Name=NO05G05450|organism=Nannochloropsis oceanica|type=gene|length=950bp
ATGCTCAGTAGCCTCGCCACGAAGGCAGGAGCTAGCAGCCTGGCCACGAA
GGCAGGAGCCATGGCGAGGAGGGGCGGCGCGCTTTTAGGCACAGgtaagg
tggcttgtgtcgatgcaccttggggaggacggtttgttggtggccgaata
gtgggacgttcgctgcacgagactgcctcctgccagcggcatgtagatcc
attttcgtcggcctgcctgtcctgtatgcgttccaatctttgctgtgtgg
ataaggggccgcgcaaggtcttgacgcacaagcacatccatacacgccaa
cagGGAAGGGCCCCGGGCCGCAGGGATTTCTCTGGACACTTCAACCGGAG
ACGGGTACGGGCAGTGGAGGGACGTCCGCGAAGGAGTATGCAATTGGTGT
ACAGGTCGTTAGTGGGGTGCTAGGAGTCGCTAGCCTAACCGCCATGGCCG
TCCATCACATCGACCAGCGGGAGATCAAGCGTGTGGAGGGCGAGCGAGCG
GCGGAGATCAAATCGGCACGGGCGAAGATCAAGCGTGTGGAGGGCGAGCG
AAGGTTGTCCGAGGAGCGTCTGAGTGCGGAGGTAGACCGATATAAATACG
ACTTACAACTGAGGTTCACCCACGATTTCAAAGCAATTGGTGTACAGGTC
GTTAGTGGGGTGCTAGGAGTCGCTAGCCTAACCGCCATGGCCGTCCATCA
CATCGACCAGCGGGAGATTAAGCGTGTGGAGGGCGAGCGAGCGGCGGAGA
TCGAGCGTGTAAAAGGGGAGATCAAGCGTGTGGAGGGCGAGCGAGCGGCG
GAGATGAAATCGGCAGGGGCGAAGATCAAGCGTGTGGAGGGCGAGCGAAG
GTTGTCCCAGGAGCGTCTGAGAGCGGAGGTAGACCGATATAAATACGACT
TACAACTGAGGTTCACCCACGATTTCAAAGCGTATCAAGCTCAGTTGTAA
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protein sequence of NO05G05450.1

>NO05G05450.1-protein ID=NO05G05450.1-protein|Name=NO05G05450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MLSSLATKAGASSLATKAGAMARRGGALLGTGKGPGPQGFLWTLQPETGT
GSGGTSAKEYAIGVQVVSGVLGVASLTAMAVHHIDQREIKRVEGERAAEI
KSARAKIKRVEGERRLSEERLSAEVDRYKYDLQLRFTHDFKAIGVQVVSG
VLGVASLTAMAVHHIDQREIKRVEGERAAEIERVKGEIKRVEGERAAEMK
SAGAKIKRVEGERRLSQERLRAEVDRYKYDLQLRFTHDFKAYQAQL*
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Synonyms
Publications