NO05G05450.1, NO05G05450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G05450.1
Unique NameNO05G05450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length741
Alignment locationchr5:1469666..1470615 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1469666..1470615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G05450.1 vs.
Match: EWM20020.1 (hypothetical protein Naga_102283g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 138.3 bits (347), Expect = 3.300e-29
Identity = 79/118 (66.95%), Postives = 96/118 (81.36%), Query Frame = 0 
Query:  142 AIGVQVVSGVLGVASLTAMAVHHIDQREI-----------KRVEGERAAEIERVKGE----IKRVEGERAAEMKSAGAKIKRVEGERRLSQERLRAEVDRYKYDLQLRFTHDFKAYQA 245
            ++G+Q+V GVLGVAS+TA AVHH+DQRE+           KRVEGERAAE++RV+GE    +KRVEGERAAE+K A A+IKRVEGERRLS+ERLRAE++RYKYDLQLR T D+K YQA
Sbjct:   65 SVGLQIVVGVLGVASVTAAAVHHLDQRELAAAIKLAAAEMKRVEGERAAEMKRVEGERAAEMKRVEGERAAEIKLAAAEIKRVEGERRLSEERLRAELERYKYDLQLRHTQDYKPYQA 182
The following BLAST results are available for this feature:
BLAST of NO05G05450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20020.13.300e-2966.95hypothetical protein Naga_102283g1, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G05450NO05G05450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G05450.1NO05G05450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G05450.1.cds1NO05G05450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G05450.1.cds2NO05G05450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G05450.1 ID=NO05G05450.1|Name=NO05G05450.1|organism=Nannochloropsis oceanica|type=mRNA|length=741bp
ATGCTCAGTAGCCTCGCCACGAAGGCAGGAGCTAGCAGCCTGGCCACGAA
GGCAGGAGCCATGGCGAGGAGGGGCGGCGCGCTTTTAGGCACAGGGAAGG
GCCCCGGGCCGCAGGGATTTCTCTGGACACTTCAACCGGAGACGGGTACG
GGCAGTGGAGGGACGTCCGCGAAGGAGTATGCAATTGGTGTACAGGTCGT
TAGTGGGGTGCTAGGAGTCGCTAGCCTAACCGCCATGGCCGTCCATCACA
TCGACCAGCGGGAGATCAAGCGTGTGGAGGGCGAGCGAGCGGCGGAGATC
AAATCGGCACGGGCGAAGATCAAGCGTGTGGAGGGCGAGCGAAGGTTGTC
CGAGGAGCGTCTGAGTGCGGAGGTAGACCGATATAAATACGACTTACAAC
TGAGGTTCACCCACGATTTCAAAGCAATTGGTGTACAGGTCGTTAGTGGG
GTGCTAGGAGTCGCTAGCCTAACCGCCATGGCCGTCCATCACATCGACCA
GCGGGAGATTAAGCGTGTGGAGGGCGAGCGAGCGGCGGAGATCGAGCGTG
TAAAAGGGGAGATCAAGCGTGTGGAGGGCGAGCGAGCGGCGGAGATGAAA
TCGGCAGGGGCGAAGATCAAGCGTGTGGAGGGCGAGCGAAGGTTGTCCCA
GGAGCGTCTGAGAGCGGAGGTAGACCGATATAAATACGACTTACAACTGA
GGTTCACCCACGATTTCAAAGCGTATCAAGCTCAGTTGTAA
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protein sequence of NO05G05450.1

>NO05G05450.1-protein ID=NO05G05450.1-protein|Name=NO05G05450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MLSSLATKAGASSLATKAGAMARRGGALLGTGKGPGPQGFLWTLQPETGT
GSGGTSAKEYAIGVQVVSGVLGVASLTAMAVHHIDQREIKRVEGERAAEI
KSARAKIKRVEGERRLSEERLSAEVDRYKYDLQLRFTHDFKAIGVQVVSG
VLGVASLTAMAVHHIDQREIKRVEGERAAEIERVKGEIKRVEGERAAEMK
SAGAKIKRVEGERRLSQERLRAEVDRYKYDLQLRFTHDFKAYQAQL*
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mRNA from alignment at chr5:1469666..1470615+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G05450.1 ID=NO05G05450.1|Name=NO05G05450.1|organism=Nannochloropsis oceanica|type=mRNA|length=950bp|location=Sequence derived from alignment at chr5:1469666..1470615+ (Nannochloropsis oceanica)
ATGCTCAGTAGCCTCGCCACGAAGGCAGGAGCTAGCAGCCTGGCCACGAA
GGCAGGAGCCATGGCGAGGAGGGGCGGCGCGCTTTTAGGCACAGGTAAGG
TGGCTTGTGTCGATGCACCTTGGGGAGGACGGTTTGTTGGTGGCCGAATA
GTGGGACGTTCGCTGCACGAGACTGCCTCCTGCCAGCGGCATGTAGATCC
ATTTTCGTCGGCCTGCCTGTCCTGTATGCGTTCCAATCTTTGCTGTGTGG
ATAAGGGGCCGCGCAAGGTCTTGACGCACAAGCACATCCATACACGCCAA
CAGGGAAGGGCCCCGGGCCGCAGGGATTTCTCTGGACACTTCAACCGGAG
ACGGGTACGGGCAGTGGAGGGACGTCCGCGAAGGAGTATGCAATTGGTGT
ACAGGTCGTTAGTGGGGTGCTAGGAGTCGCTAGCCTAACCGCCATGGCCG
TCCATCACATCGACCAGCGGGAGATCAAGCGTGTGGAGGGCGAGCGAGCG
GCGGAGATCAAATCGGCACGGGCGAAGATCAAGCGTGTGGAGGGCGAGCG
AAGGTTGTCCGAGGAGCGTCTGAGTGCGGAGGTAGACCGATATAAATACG
ACTTACAACTGAGGTTCACCCACGATTTCAAAGCAATTGGTGTACAGGTC
GTTAGTGGGGTGCTAGGAGTCGCTAGCCTAACCGCCATGGCCGTCCATCA
CATCGACCAGCGGGAGATTAAGCGTGTGGAGGGCGAGCGAGCGGCGGAGA
TCGAGCGTGTAAAAGGGGAGATCAAGCGTGTGGAGGGCGAGCGAGCGGCG
GAGATGAAATCGGCAGGGGCGAAGATCAAGCGTGTGGAGGGCGAGCGAAG
GTTGTCCCAGGAGCGTCTGAGAGCGGAGGTAGACCGATATAAATACGACT
TACAACTGAGGTTCACCCACGATTTCAAAGCGTATCAAGCTCAGTTGTAA
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Coding sequence (CDS) from alignment at chr5:1469666..1470615+

>NO05G05450.1 ID=NO05G05450.1|Name=NO05G05450.1|organism=Nannochloropsis oceanica|type=CDS|length=741bp|location=Sequence derived from alignment at chr5:1469666..1470615+ (Nannochloropsis oceanica)
ATGCTCAGTAGCCTCGCCACGAAGGCAGGAGCTAGCAGCCTGGCCACGAA
GGCAGGAGCCATGGCGAGGAGGGGCGGCGCGCTTTTAGGCACAGGGAAGG
GCCCCGGGCCGCAGGGATTTCTCTGGACACTTCAACCGGAGACGGGTACG
GGCAGTGGAGGGACGTCCGCGAAGGAGTATGCAATTGGTGTACAGGTCGT
TAGTGGGGTGCTAGGAGTCGCTAGCCTAACCGCCATGGCCGTCCATCACA
TCGACCAGCGGGAGATCAAGCGTGTGGAGGGCGAGCGAGCGGCGGAGATC
AAATCGGCACGGGCGAAGATCAAGCGTGTGGAGGGCGAGCGAAGGTTGTC
CGAGGAGCGTCTGAGTGCGGAGGTAGACCGATATAAATACGACTTACAAC
TGAGGTTCACCCACGATTTCAAAGCAATTGGTGTACAGGTCGTTAGTGGG
GTGCTAGGAGTCGCTAGCCTAACCGCCATGGCCGTCCATCACATCGACCA
GCGGGAGATTAAGCGTGTGGAGGGCGAGCGAGCGGCGGAGATCGAGCGTG
TAAAAGGGGAGATCAAGCGTGTGGAGGGCGAGCGAGCGGCGGAGATGAAA
TCGGCAGGGGCGAAGATCAAGCGTGTGGAGGGCGAGCGAAGGTTGTCCCA
GGAGCGTCTGAGAGCGGAGGTAGACCGATATAAATACGACTTACAACTGA
GGTTCACCCACGATTTCAAAGCGTATCAAGCTCAGTTGTAA
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Synonyms
Publications