NO05G05350, NO05G05350 (gene) Nannochloropsis oceanica

Overview
NameNO05G05350
Unique NameNO05G05350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2946
Alignment locationchr5:1432052..1434997 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1432052..1434997 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G05350 vs. NCBI_GenBank
Match: XP_005856147.1 (hypothetical protein NGA_0248700, partial [Nannochloropsis gaditana CCMP526] >EKU20215.1 hypothetical protein NGA_0248700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 97.8 bits (242), Expect = 1.100e-16
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 0 
Query:    9 KRRVKALNKHYRKKLVSKDFGMHGVFEGRITDCWMTPSGREYAHIQYADGDEEDVSITKVQCLLV 74
            KRRVKA+NKHYRK  V KDFGMHG F G ITDCW+  SG+EYAH+ Y DGDEED+ + +V+  L+
Sbjct:    8 KRRVKAINKHYRKLSVRKDFGMHGSFSGHITDCWVAHSGQEYAHVLYVDGDEEDIPLQEVRIFLM 72
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BLAST of NO05G05350 vs. NCBI_GenBank
Match: XP_005855504.1 (hypothetical protein NGA_0675300 [Nannochloropsis gaditana CCMP526] >EKU20862.1 hypothetical protein NGA_0675300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 97.8 bits (242), Expect = 1.100e-16
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 0 
Query:    9 KRRVKALNKHYRKKLVSKDFGMHGVFEGRITDCWMTPSGREYAHIQYADGDEEDVSITKVQCLLV 74
            KRRVKA+NKHYRK  V KDFGMHG F G ITDCW+  SG+EYAH+ Y DGDEED+ + +V+  L+
Sbjct:    8 KRRVKAINKHYRKLSVRKDFGMHGSFSGHITDCWVAHSGQEYAHVLYVDGDEEDIPLQEVRIFLM 72
[Close]
BLAST of NO05G05350 vs. NCBI_GenBank
Match: EWM27864.1 (hypothetical protein Naga_100282g2 [Nannochloropsis gaditana])

HSP 1 Score: 97.1 bits (240), Expect = 1.800e-16
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 0 
Query:    9 KRRVKALNKHYRKKLVSKDFGMHGVFEGRITDCWMTPSGREYAHIQYADGDEEDVSITKVQCLLV 74
            KRRVKA+NKHYRK  V KDFGMHG F G ITDCW+  SG+EYAH+ Y DGDEED+ + +V+  L+
Sbjct:    8 KRRVKAINKHYRKLSVRKDFGMHGSFSGHITDCWVAHSGQEYAHVLYVDGDEEDIPLQEVRNFLM 72
The following BLAST results are available for this feature:
BLAST of NO05G05350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005856147.11.100e-1664.62hypothetical protein NGA_0248700, partial [Nannoch... [more]
XP_005855504.11.100e-1664.62hypothetical protein NGA_0675300 [Nannochloropsis ... [more]
EWM27864.11.800e-1664.62hypothetical protein Naga_100282g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003308NSK003308Nannochloropsis salina (N. salina CCMP1776)gene


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100282g2gene2698Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G05350.1NO05G05350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G05350.2NO05G05350.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G05350.3NO05G05350.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G05350.1NO05G05350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G05350.2NO05G05350.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G05350.3NO05G05350.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G05350 ID=NO05G05350|Name=NO05G05350|organism=Nannochloropsis oceanica|type=gene|length=2946bp
ATGCTGCCTGTAATGTAGCGGGGAAGGGGAGGGAGGGAGGAGGCTGAGAT
ATGCGTGGTGGGAGAAGTGATTATGCTGGTGGCGATGTTGTTTGCATGGA
AGCTTGTCGGAAGAGCGAGGTGTATAAGAATGCGAAGGGGGGGTCAACAG
GTGGGGGTCGATGGATGCAGGGCACATTATCAATGGATGGTCTCGTTTAG
AAGGGTTTGATGCACACATGGGAACGAGGCAGAGAAGGTGCCTCGCAGCC
TATGGCCGTTGCGATAATTGATGGAATGCTCCTCCTGCACACATCACGCC
CTCCACAACACACCGCAAAAATCCACACACTTAGGGATACCAGCAGCACA
CATTTTCCTCCTGCTGATGTGCGCCCAATTGAGCGTGTTTGCAGCGGCGG
CATCTACATGGCATTGAATTATGCTCTTTAAAGGAAAATGACCGGGGGCA
TACTATTCGAATAATGGTCGTTCAATCGTTTCCTTCTCGATTTCCAAAAC
ACAGGCAACTCACTCATGATCCAACACCCAGGCCACCCATCGCTGCGTAG
AAAATGGCATTGACTGAAGCGGAGATCAAGCGGCGTGTGAAGGTGCGTTG
TTTAGAGCTTTCCTTCTCCCTTCTCTCCATGATGGAGGCAGTCAAATGTA
TGTGTCGAGCTGTCCATGAGCACCCTTGCACCGTAGCACGATACCATTGC
ACTAGAACTTGACTCCCTCTGAAGCACTCCATGGATTTATATCCCTCCTC
GTACCCGTTTCTCGGCGTTGATGTTCCTCCCTCACCCCCCTGCCACCCCT
CCTACGCTCCCATATGTGCAGGCTCTCAACAAGCACTACCGCAAAAAACT
CGTGAGCAAGGACTTTGGCATGCATGGTGTTTTTGAGGgtaagttgccac
aagtaggactggaagagaatggtggggcaacaagaaagaagcacggtagg
ccaggaggaggaaagaaagggatggaaagaaaggctctaactcaaaaact
tcctcctcgctctaaatgtttagGCCGCATTACGGATTGCTGGATGACGC
CGTCCGGGCGAGAGTACGCCCACATCCAGTACGCTGATGGCGACGAGGAG
GATGTCTCCATCACCAAGGTCAGAACAAGAGAGGGGAAAGGGAGGGCGGT
GCGTCGACGGAGTTGGTTACTGTAAAATGGTCCACACCACCGCAAAATGT
GGTGCATTTCGCACTTAATTTCTCTCATCCATTCCTCTCGCCTTTCCTCT
TGTCTAGGTACAATGTCTCTTGGTCGAGTCGCTCACGCCGATGCTCCCGT
CCTGTCCGCGTCGGATTACGCGCCTAGCGCAGGCTGCTGCCACCAGCCAC
CGCAGCAGCAACATTAGTTGCAGCGACGGCAATGGCCAGAGCAACAAGGG
GCTCAAAGAAGACGGAGAAGAAGCCATGCAGCTTGAAGATGACAACGAGG
ACGAACGAGAGGTGAGGTCGTGCGTAGCTACAGCAGCAGGGCAGGAAGGA
GGAAGGGCAGCGTCGTCTGCTCCCTGCCCTTCTGCAGCCGCTGCAGGCAA
GACGACTGCCTCGGCTCCTCGTGCCACTTCGGCCGCCGGTGAAAAAAATG
CCGAGGCGGATAGTGGAGGAGTGGGAACAGCAGCAGCAGCAGCAGCAGCA
GCAGCAACAACAAGAACAGCAGCATCAGCAGTCGCACTGCCCTTGCTATC
GCCCGCGATTGTTAATGCCGAGTCTATTAAAGGGACCGCATCGATCGTGG
AGACAGTGGCGGGAGAATTCAGAAGGACATCAAGTAAGGAAGAGAAAGGA
AAGGAAGATAAGGTGGTGGTGAAGGAGATGGAGGGAGCGGAAGAAACGCT
GAGTACGGAAGAGGGAGGAAAGGAGGATGAGGTGGTGGTGAAGGAGATGG
AGGGAGCGGAAGACACGCTGAGTACGGAAGAGGAAGGAAAGGAGGATGAG
GTGGTGGTGAAGGAGATGAAGGGAGCGGAAGAAACGCTGGGTATGGAAGA
GGAAGGAAATGAGGGTAATGTAGTGGTGAAGGAGATGGGGGCAGCGGAGG
GGCTCAAGGCGGAAAAGCAGCAGGAGGCCGAGAAGGGAATTGTGTTGCAT
GAGGAAGGGGGGGGTCGAAAGATACCTCAACTGCCTTCGAGCACCAGCAC
CAGCAATACCACCACCAGCACCAGCACGATCACCACCACCACTACTAGCA
CCAGCAGCGAGACTAAGGCTGCGGATTTGGTCTGTTGGAACGACTCACTG
AAGCCCTCTTCCTCCACCCTCAACGGTTATATCGTCCGTTCTTCATTCCC
TTCCTCCCGCTTTTCCTTCCTTGCGCCCATCGTCGGCAAAAGTGAAGGAG
GAGAAGGGAACGGGGGTGAGAGTCGAGGTGATGCAAAAATAGGAGCAGGA
GACGGTGGTAGTGGAGGAGGGAGACAGGGAGGGGCGGGAACGGCGAGGGA
GCTAGCGCCCTTCAAGCACCTCGTTGGCAGTATCGTCCGGAAGCCAGGTG
ATGATGCGGGGCCCGTCACGGgtgagcagggagggagggagcaaaggagg
gagaggtgtgtggcggaagtcaatagttaagagatgggcgggcttgtatc
ggtgcctggcctatcaaggggaaaatcgggtagagcttgactgatccatt
tctcttctctttcctctctcctctccttctccttcagGCCTGGTGTCAAA
AGTGTGGGTCGGTGATCCTAAGGGCGCCCGTCGAGTGCTGGCTCGCATCA
GGTACGGCAACAAACACGAGGAGGACTTGCCTATCGACGACCTGCTGCCA
CTGCTCAAGCCCAAGAGGTCCAGGCGATGAGTGCAGTATGACGGGATGGA
GGAAGGGAGGGAGAAGAGCGATCGTGATGAAAACCATGCATTTTGTATTT
CATTTAAGGTGTAAAAAAGAATCGAAGGAATCAGCCACTCTCAGGT
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protein sequence of NO05G05350.1

>NO05G05350.1-protein ID=NO05G05350.1-protein|Name=NO05G05350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=540bp
MFLPHPPATPPTLPYVQALNKHYRKKLVSKDFGMHGVFEGRITDCWMTPS
GREYAHIQYADGDEEDVSITKVQCLLVESLTPMLPSCPRRITRLAQAAAT
SHRSSNISCSDGNGQSNKGLKEDGEEAMQLEDDNEDEREVRSCVATAAGQ
EGGRAASSAPCPSAAAAGKTTASAPRATSAAGEKNAEADSGGVGTAAAAA
AAAATTRTAASAVALPLLSPAIVNAESIKGTASIVETVAGEFRRTSSKEE
KGKEDKVVVKEMEGAEETLSTEEGGKEDEVVVKEMEGAEDTLSTEEEGKE
DEVVVKEMKGAEETLGMEEEGNEGNVVVKEMGAAEGLKAEKQQEAEKGIV
LHEEGGGRKIPQLPSSTSTSNTTTSTSTITTTTTSTSSETKAADLVCWND
SLKPSSSTLNGYIVRSSFPSSRFSFLAPIVGKSEGGEGNGGESRGDAKIG
AGDGGSGGGRQGGAGTARELAPFKHLVGSIVRKPGDDAGPVTGLVSKVWV
GDPKGARRVLARIRYGNKHEEDLPIDDLLPLLKPKRSRR*
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protein sequence of NO05G05350.2

>NO05G05350.2-protein ID=NO05G05350.2-protein|Name=NO05G05350.2|organism=Nannochloropsis oceanica|type=polypeptide|length=458bp
MLPSCPRRITRLAQAAATSHRSSNISCSDGNGQSNKGLKEDGEEAMQLED
DNEDEREVRSCVATAAGQEGGRAASSAPCPSAAAAGKTTASAPRATSAAG
EKNAEADSGGVGTAAAAAAAAATTRTAASAVALPLLSPAIVNAESIKGTA
SIVETVAGEFRRTSSKEEKGKEDKVVVKEMEGAEETLSTEEGGKEDEVVV
KEMEGAEDTLSTEEEGKEDEVVVKEMKGAEETLGMEEEGNEGNVVVKEMG
AAEGLKAEKQQEAEKGIVLHEEGGGRKIPQLPSSTSTSNTTTSTSTITTT
TTSTSSETKAADLVCWNDSLKPSSSTLNGYIVRSSFPSSRFSFLAPIVGK
SEGGEGNGGESRGDAKIGAGDGGSGGGRQGGAGTARELAPFKHLVGSIVR
KPGDDAGPVTGLVSKVWVGDPKGARRVLARIRYGNKHEEDLPIDDLLPLL
KPKRSRR*
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protein sequence of NO05G05350.3

>NO05G05350.3-protein ID=NO05G05350.3-protein|Name=NO05G05350.3|organism=Nannochloropsis oceanica|type=polypeptide|length=536bp
MALTEAEIKRRVKALNKHYRKKLVSKDFGMHGVFEGRITDCWMTPSGREY
AHIQYADGDEEDVSITKVQCLLVESLTPMLPSCPRRITRLAQAAATSHRS
SNISCSDGNGQSNKGLKEDGEEAMQLEDDNEDEREVRSCVATAAGQEGGR
AASSAPCPSAAAAGKTTASAPRATSAAGEKNAEADSGGVGTAAAAAAAAA
TTRTAASAVALPLLSPAIVNAESIKGTASIVETVAGEFRRTSSKEEKGKE
DKVVVKEMEGAEETLSTEEGGKEDEVVVKEMEGAEDTLSTEEEGKEDEVV
VKEMKGAEETLGMEEEGNEGNVVVKEMGAAEGLKAEKQQEAEKGIVLHEE
GGGRKIPQLPSSTSTSNTTTSTSTITTTTTSTSSETKAADLVCWNDSLKP
SSSTLNGYIVRSSFPSSRFSFLAPIVGKSEGGEGNGGESRGDAKIGAGDG
GSGGGRQGGAGTARELAPFKHLVGSIVRKPGDDAGPVTGLVSKVWVGDPK
GARRVLARIRYGNKHEEDLPIDDLLPLLKPKRSRR*
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Synonyms
Publications