NO05G05350.3, NO05G05350.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G05350.3
Unique Name	NO05G05350.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1782
Alignment location	chr5:1432547..1434997 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:1432547..1434997 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO05G05350.3 vs.
Match: XP_005855504.1 (hypothetical protein NGA_0675300 [Nannochloropsis gaditana CCMP526]; EKU20862.1 hypothetical protein NGA_0675300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 106.3 bits (264), Expect = 3.000e-19
Identity = 47/77 (61.04%), Postives = 57/77 (74.03%), Query Frame = 0

Query:    9 KRRVKALNKHYRKKLVSKDFGMHGVFEGRITDCWMTPSGREYAHIQYADGDEEDVSITKVQCLLVESLTPMLPSCPR 86
            KRRVKA+NKHYRK  V KDFGMHG F G ITDCW+  SG+EYAH+ Y DGDEED+ + +V+  L+  L P  P+ PR
Sbjct:    8 KRRVKAINKHYRKLSVRKDFGMHGSFSGHITDCWVAHSGQEYAHVLYVDGDEEDIPLQEVRIFLMAPLPPTPPTSPR 84

The following BLAST results are available for this feature:

BLAST of NO05G05350.3 vs.

BLAST of NO05G05350.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005855504.1	3.000e-19	61.04	hypothetical protein NGA_0675300 [Nannochloropsis ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G05350	NO05G05350	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G05350.3	NO05G05350.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G05350.3.cds1	NO05G05350.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05350.3.cds2	NO05G05350.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05350.3.cds3	NO05G05350.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05350.3.cds4	NO05G05350.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05350.3.cds5	NO05G05350.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:1432547..1434997+
coding sequence from alignment at chr5:1432547..1434997+

mRNA sequence

>NO05G05350.3 ID=NO05G05350.3|Name=NO05G05350.3|organism=Nannochloropsis oceanica|type=mRNA|length=1782bp
AAAACACAGGCAACTCACTCATGATCCAACACCCAGGCCACCCATCGCTG
CGTAGAAAATGGCATTGACTGAAGCGGAGATCAAGCGGCGTGTGAAGGCT
CTCAACAAGCACTACCGCAAAAAACTCGTGAGCAAGGACTTTGGCATGCA
TGGTGTTTTTGAGGGCCGCATTACGGATTGCTGGATGACGCCGTCCGGGC
GAGAGTACGCCCACATCCAGTACGCTGATGGCGACGAGGAGGATGTCTCC
ATCACCAAGGTACAATGTCTCTTGGTCGAGTCGCTCACGCCGATGCTCCC
GTCCTGTCCGCGTCGGATTACGCGCCTAGCGCAGGCTGCTGCCACCAGCC
ACCGCAGCAGCAACATTAGTTGCAGCGACGGCAATGGCCAGAGCAACAAG
GGGCTCAAAGAAGACGGAGAAGAAGCCATGCAGCTTGAAGATGACAACGA
GGACGAACGAGAGGTGAGGTCGTGCGTAGCTACAGCAGCAGGGCAGGAAG
GAGGAAGGGCAGCGTCGTCTGCTCCCTGCCCTTCTGCAGCCGCTGCAGGC
AAGACGACTGCCTCGGCTCCTCGTGCCACTTCGGCCGCCGGTGAAAAAAA
TGCCGAGGCGGATAGTGGAGGAGTGGGAACAGCAGCAGCAGCAGCAGCAG
CAGCAGCAACAACAAGAACAGCAGCATCAGCAGTCGCACTGCCCTTGCTA
TCGCCCGCGATTGTTAATGCCGAGTCTATTAAAGGGACCGCATCGATCGT
GGAGACAGTGGCGGGAGAATTCAGAAGGACATCAAGTAAGGAAGAGAAAG
GAAAGGAAGATAAGGTGGTGGTGAAGGAGATGGAGGGAGCGGAAGAAACG
CTGAGTACGGAAGAGGGAGGAAAGGAGGATGAGGTGGTGGTGAAGGAGAT
GGAGGGAGCGGAAGACACGCTGAGTACGGAAGAGGAAGGAAAGGAGGATG
AGGTGGTGGTGAAGGAGATGAAGGGAGCGGAAGAAACGCTGGGTATGGAA
GAGGAAGGAAATGAGGGTAATGTAGTGGTGAAGGAGATGGGGGCAGCGGA
GGGGCTCAAGGCGGAAAAGCAGCAGGAGGCCGAGAAGGGAATTGTGTTGC
ATGAGGAAGGGGGGGGTCGAAAGATACCTCAACTGCCTTCGAGCACCAGC
ACCAGCAATACCACCACCAGCACCAGCACGATCACCACCACCACTACTAG
CACCAGCAGCGAGACTAAGGCTGCGGATTTGGTCTGTTGGAACGACTCAC
TGAAGCCCTCTTCCTCCACCCTCAACGGTTATATCGTCCGTTCTTCATTC
CCTTCCTCCCGCTTTTCCTTCCTTGCGCCCATCGTCGGCAAAAGTGAAGG
AGGAGAAGGGAACGGGGGTGAGAGTCGAGGTGATGCAAAAATAGGAGCAG
GAGACGGTGGTAGTGGAGGAGGGAGACAGGGAGGGGCGGGAACGGCGAGG
GAGCTAGCGCCCTTCAAGCACCTCGTTGGCAGTATCGTCCGGAAGCCAGG
TGATGATGCGGGGCCCGTCACGGGCCTGGTGTCAAAAGTGTGGGTCGGTG
ATCCTAAGGGCGCCCGTCGAGTGCTGGCTCGCATCAGGTACGGCAACAAA
CACGAGGAGGACTTGCCTATCGACGACCTGCTGCCACTGCTCAAGCCCAA
GAGGTCCAGGCGATGAGTGCAGTATGACGGGATGGAGGAAGGGAGGGAGA
AGAGCGATCGTGATGAAAACCATGCATTTTGTATTTCATTTAAGGTGTAA
AAAAGAATCGAAGGAATCAGCCACTCTCAGGT

protein sequence of NO05G05350.3

>NO05G05350.3-protein ID=NO05G05350.3-protein|Name=NO05G05350.3|organism=Nannochloropsis oceanica|type=polypeptide|length=536bp
MALTEAEIKRRVKALNKHYRKKLVSKDFGMHGVFEGRITDCWMTPSGREY
AHIQYADGDEEDVSITKVQCLLVESLTPMLPSCPRRITRLAQAAATSHRS
SNISCSDGNGQSNKGLKEDGEEAMQLEDDNEDEREVRSCVATAAGQEGGR
AASSAPCPSAAAAGKTTASAPRATSAAGEKNAEADSGGVGTAAAAAAAAA
TTRTAASAVALPLLSPAIVNAESIKGTASIVETVAGEFRRTSSKEEKGKE
DKVVVKEMEGAEETLSTEEGGKEDEVVVKEMEGAEDTLSTEEEGKEDEVV
VKEMKGAEETLGMEEEGNEGNVVVKEMGAAEGLKAEKQQEAEKGIVLHEE
GGGRKIPQLPSSTSTSNTTTSTSTITTTTTSTSSETKAADLVCWNDSLKP
SSSTLNGYIVRSSFPSSRFSFLAPIVGKSEGGEGNGGESRGDAKIGAGDG
GSGGGRQGGAGTARELAPFKHLVGSIVRKPGDDAGPVTGLVSKVWVGDPK
GARRVLARIRYGNKHEEDLPIDDLLPLLKPKRSRR*

mRNA from alignment at chr5:1432547..1434997+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G05350.3 ID=NO05G05350.3|Name=NO05G05350.3|organism=Nannochloropsis oceanica|type=mRNA|length=2451bp|location=Sequence derived from alignment at chr5:1432547..1434997+ (Nannochloropsis oceanica)
AAAACACAGGCAACTCACTCATGATCCAACACCCAGGCCACCCATCGCTG
CGTAGAAAATGGCATTGACTGAAGCGGAGATCAAGCGGCGTGTGAAGGTG
CGTTGTTTAGAGCTTTCCTTCTCCCTTCTCTCCATGATGGAGGCAGTCAA
ATGTATGTGTCGAGCTGTCCATGAGCACCCTTGCACCGTAGCACGATACC
ATTGCACTAGAACTTGACTCCCTCTGAAGCACTCCATGGATTTATATCCC
TCCTCGTACCCGTTTCTCGGCGTTGATGTTCCTCCCTCACCCCCCTGCCA
CCCCTCCTACGCTCCCATATGTGCAGGCTCTCAACAAGCACTACCGCAAA
AAACTCGTGAGCAAGGACTTTGGCATGCATGGTGTTTTTGAGGGTAAGTT
GCCACAAGTAGGACTGGAAGAGAATGGTGGGGCAACAAGAAAGAAGCACG
GTAGGCCAGGAGGAGGAAAGAAAGGGATGGAAAGAAAGGCTCTAACTCAA
AAACTTCCTCCTCGCTCTAAATGTTTAGGCCGCATTACGGATTGCTGGAT
GACGCCGTCCGGGCGAGAGTACGCCCACATCCAGTACGCTGATGGCGACG
AGGAGGATGTCTCCATCACCAAGGTCAGAACAAGAGAGGGGAAAGGGAGG
GCGGTGCGTCGACGGAGTTGGTTACTGTAAAATGGTCCACACCACCGCAA
AATGTGGTGCATTTCGCACTTAATTTCTCTCATCCATTCCTCTCGCCTTT
CCTCTTGTCTAGGTACAATGTCTCTTGGTCGAGTCGCTCACGCCGATGCT
CCCGTCCTGTCCGCGTCGGATTACGCGCCTAGCGCAGGCTGCTGCCACCA
GCCACCGCAGCAGCAACATTAGTTGCAGCGACGGCAATGGCCAGAGCAAC
AAGGGGCTCAAAGAAGACGGAGAAGAAGCCATGCAGCTTGAAGATGACAA
CGAGGACGAACGAGAGGTGAGGTCGTGCGTAGCTACAGCAGCAGGGCAGG
AAGGAGGAAGGGCAGCGTCGTCTGCTCCCTGCCCTTCTGCAGCCGCTGCA
GGCAAGACGACTGCCTCGGCTCCTCGTGCCACTTCGGCCGCCGGTGAAAA
AAATGCCGAGGCGGATAGTGGAGGAGTGGGAACAGCAGCAGCAGCAGCAG
CAGCAGCAGCAACAACAAGAACAGCAGCATCAGCAGTCGCACTGCCCTTG
CTATCGCCCGCGATTGTTAATGCCGAGTCTATTAAAGGGACCGCATCGAT
CGTGGAGACAGTGGCGGGAGAATTCAGAAGGACATCAAGTAAGGAAGAGA
AAGGAAAGGAAGATAAGGTGGTGGTGAAGGAGATGGAGGGAGCGGAAGAA
ACGCTGAGTACGGAAGAGGGAGGAAAGGAGGATGAGGTGGTGGTGAAGGA
GATGGAGGGAGCGGAAGACACGCTGAGTACGGAAGAGGAAGGAAAGGAGG
ATGAGGTGGTGGTGAAGGAGATGAAGGGAGCGGAAGAAACGCTGGGTATG
GAAGAGGAAGGAAATGAGGGTAATGTAGTGGTGAAGGAGATGGGGGCAGC
GGAGGGGCTCAAGGCGGAAAAGCAGCAGGAGGCCGAGAAGGGAATTGTGT
TGCATGAGGAAGGGGGGGGTCGAAAGATACCTCAACTGCCTTCGAGCACC
AGCACCAGCAATACCACCACCAGCACCAGCACGATCACCACCACCACTAC
TAGCACCAGCAGCGAGACTAAGGCTGCGGATTTGGTCTGTTGGAACGACT
CACTGAAGCCCTCTTCCTCCACCCTCAACGGTTATATCGTCCGTTCTTCA
TTCCCTTCCTCCCGCTTTTCCTTCCTTGCGCCCATCGTCGGCAAAAGTGA
AGGAGGAGAAGGGAACGGGGGTGAGAGTCGAGGTGATGCAAAAATAGGAG
CAGGAGACGGTGGTAGTGGAGGAGGGAGACAGGGAGGGGCGGGAACGGCG
AGGGAGCTAGCGCCCTTCAAGCACCTCGTTGGCAGTATCGTCCGGAAGCC
AGGTGATGATGCGGGGCCCGTCACGGGTGAGCAGGGAGGGAGGGAGCAAA
GGAGGGAGAGGTGTGTGGCGGAAGTCAATAGTTAAGAGATGGGCGGGCTT
GTATCGGTGCCTGGCCTATCAAGGGGAAAATCGGGTAGAGCTTGACTGAT
CCATTTCTCTTCTCTTTCCTCTCTCCTCTCCTTCTCCTTCAGGCCTGGTG
TCAAAAGTGTGGGTCGGTGATCCTAAGGGCGCCCGTCGAGTGCTGGCTCG
CATCAGGTACGGCAACAAACACGAGGAGGACTTGCCTATCGACGACCTGC
TGCCACTGCTCAAGCCCAAGAGGTCCAGGCGATGAGTGCAGTATGACGGG
ATGGAGGAAGGGAGGGAGAAGAGCGATCGTGATGAAAACCATGCATTTTG
TATTTCATTTAAGGTGTAAAAAAGAATCGAAGGAATCAGCCACTCTCAGG
T

Coding sequence (CDS) from alignment at chr5:1432547..1434997+

>NO05G05350.3 ID=NO05G05350.3|Name=NO05G05350.3|organism=Nannochloropsis oceanica|type=CDS|length=1608bp|location=Sequence derived from alignment at chr5:1432547..1434997+ (Nannochloropsis oceanica)
ATGGCATTGACTGAAGCGGAGATCAAGCGGCGTGTGAAGGCTCTCAACAA
GCACTACCGCAAAAAACTCGTGAGCAAGGACTTTGGCATGCATGGTGTTT
TTGAGGGCCGCATTACGGATTGCTGGATGACGCCGTCCGGGCGAGAGTAC
GCCCACATCCAGTACGCTGATGGCGACGAGGAGGATGTCTCCATCACCAA
GGTACAATGTCTCTTGGTCGAGTCGCTCACGCCGATGCTCCCGTCCTGTC
CGCGTCGGATTACGCGCCTAGCGCAGGCTGCTGCCACCAGCCACCGCAGC
AGCAACATTAGTTGCAGCGACGGCAATGGCCAGAGCAACAAGGGGCTCAA
AGAAGACGGAGAAGAAGCCATGCAGCTTGAAGATGACAACGAGGACGAAC
GAGAGGTGAGGTCGTGCGTAGCTACAGCAGCAGGGCAGGAAGGAGGAAGG
GCAGCGTCGTCTGCTCCCTGCCCTTCTGCAGCCGCTGCAGGCAAGACGAC
TGCCTCGGCTCCTCGTGCCACTTCGGCCGCCGGTGAAAAAAATGCCGAGG
CGGATAGTGGAGGAGTGGGAACAGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACAACAAGAACAGCAGCATCAGCAGTCGCACTGCCCTTGCTATCGCCCGC
GATTGTTAATGCCGAGTCTATTAAAGGGACCGCATCGATCGTGGAGACAG
TGGCGGGAGAATTCAGAAGGACATCAAGTAAGGAAGAGAAAGGAAAGGAA
GATAAGGTGGTGGTGAAGGAGATGGAGGGAGCGGAAGAAACGCTGAGTAC
GGAAGAGGGAGGAAAGGAGGATGAGGTGGTGGTGAAGGAGATGGAGGGAG
CGGAAGACACGCTGAGTACGGAAGAGGAAGGAAAGGAGGATGAGGTGGTG
GTGAAGGAGATGAAGGGAGCGGAAGAAACGCTGGGTATGGAAGAGGAAGG
AAATGAGGGTAATGTAGTGGTGAAGGAGATGGGGGCAGCGGAGGGGCTCA
AGGCGGAAAAGCAGCAGGAGGCCGAGAAGGGAATTGTGTTGCATGAGGAA
GGGGGGGGTCGAAAGATACCTCAACTGCCTTCGAGCACCAGCACCAGCAA
TACCACCACCAGCACCAGCACGATCACCACCACCACTACTAGCACCAGCA
GCGAGACTAAGGCTGCGGATTTGGTCTGTTGGAACGACTCACTGAAGCCC
TCTTCCTCCACCCTCAACGGTTATATCGTCCGTTCTTCATTCCCTTCCTC
CCGCTTTTCCTTCCTTGCGCCCATCGTCGGCAAAAGTGAAGGAGGAGAAG
GGAACGGGGGTGAGAGTCGAGGTGATGCAAAAATAGGAGCAGGAGACGGT
GGTAGTGGAGGAGGGAGACAGGGAGGGGCGGGAACGGCGAGGGAGCTAGC
GCCCTTCAAGCACCTCGTTGGCAGTATCGTCCGGAAGCCAGGTGATGATG
CGGGGCCCGTCACGGGCCTGGTGTCAAAAGTGTGGGTCGGTGATCCTAAG
GGCGCCCGTCGAGTGCTGGCTCGCATCAGGTACGGCAACAAACACGAGGA
GGACTTGCCTATCGACGACCTGCTGCCACTGCTCAAGCCCAAGAGGTCCA
GGCGATGA

Synonyms

Publications