NO05G04670, NO05G04670 (gene) Nannochloropsis oceanica

Overview
NameNO05G04670
Unique NameNO05G04670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2701
Alignment locationchr5:1213998..1216698 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1213998..1216698 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009500DUF1118
Homology
[Close]
BLAST of NO05G04670 vs. NCBI_GenBank
Match: XP_005855712.1 (hypothetical protein NGA_0605600 [Nannochloropsis gaditana CCMP526] >EKU20634.1 hypothetical protein NGA_0605600 [Nannochloropsis gaditana CCMP526] >EWM27972.1 Protein of unknown function DUF1118 [Nannochloropsis gaditana])

HSP 1 Score: 330.5 bits (846), Expect = 7.500e-87
Identity = 211/313 (67.41%), Postives = 229/313 (73.16%), Query Frame = 0 
Query:    1 MKTFAVLTLGSLAMSQAFMAPSPAAFGPISRSAVRSSA--GRSMRMENFNLPVGEDQAENVPTSMLGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTLAPIAIEQAPALLPILTAVLRTPPTTFYAVAAAALAAEAGIVLVSGNPLIDVLAGIPXXXXXXXXXXXXTILSSGISVPSAGPRKIRSVSSSSSSADVTPKFKVGGGAKSGRVKAAKPINAPVVTVAPPKKASAPVVRGPLSAPARSGASTGVKAPAPKAAPA 312
            MKTFAVLTL SLAMSQAF+AP+PAAFG  SRS VRS A   RSM+MENFNLP+GEDQAENVP+++LGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLT                                           QTLAPIAIEQAPALLPILT VLRTPP TF+AVAAAALAAEAG+VLVSGNPLIDVLAGIP     XXXXXX TILSSG+ +PSA PR+I   SSS   ADVTP FKVGGG K GRVKAAK + +  V VAPPKK++APVV GPLSAPAR GA T   APA +  P+
Sbjct:    1 MKTFAVLTLVSLAMSQAFLAPTPAAFGS-SRSGVRSMATGARSMKMENFNLPIGEDQAENVPSTILGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPILTGVLRTPPATFFAVAAAALAAEAGVVLVSGNPLIDVLAGIPLVGLAXXXXXXGTILSSGVPIPSAAPRRI---SSSGGGADVTPAFKVGGG-KKGRVKAAKVVASAPVAVAPPKKSAAPVVLGPLSAPARGGAPT---APAARPTPS 305
[Close]
BLAST of NO05G04670 vs. NCBI_GenBank
Match: XP_002286472.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED96113.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 70.9 bits (172), Expect = 1.100e-8
Identity = 68/191 (35.60%), Postives = 85/191 (44.50%), Query Frame = 0 
Query:    5 AVLTLGSLAMSQAFMAPSPAAFGPISRSAVRSSAGRSMRMENFNLPVGEDQAENVPTSMLGEANYRKFVASYKPDGMIVGGA---------------RYPLFRRVSELKLLSLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTLAPIAIEQAPALLPILTAVLRTPPTTFYAVAA 181
            ++LTLG        +A S +AF   S S+V S     +  ENF     EDQAEN PTS+LGEANY+K+V S  P+ M+   +                YP+  RV EL LL  TXXXXXXXX                                     +APIAIE AP LLP++   +   P  FY  AA
Sbjct:    6 SLLTLG--------LAASTSAFSTTSTSSVASRPSTKL-YENFGFDFAEDQAENTPTSILGEANYKKWVNSVDPNNMLNRQSVLAVALGWEGTDEEDTYPVLSRVRELGLLEKTXXXXXXXXLEAQGLTLEKAEELLPALEKLGVLKLVANNQQLLINGVAPIAIEGAPLLLPLVAGAIEVGPAAFYLAAA 187
The following BLAST results are available for this feature:
BLAST of NO05G04670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855712.17.500e-8767.41hypothetical protein NGA_0605600 [Nannochloropsis ... [more]
XP_002286472.11.100e-835.60predicted protein [Thalassiosira pseudonana CCMP13... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003387NSK003387Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04670.1NO05G04670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G04670.2NO05G04670.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585193gene_3283Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g127gene2630Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04670.1NO05G04670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G04670.2NO05G04670.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04670 ID=NO05G04670|Name=NO05G04670|organism=Nannochloropsis oceanica|type=gene|length=2701bp
TGGATGTTTGATAAAAATTGATGGATAAACAGTGGGCTGCATGTTTAAGA
ATCGAATGGAAAAATCATGTCAGTGGGCGATGCGGCAAGGAGTGGCGCAT
TTTCCCTCACGCCTCATTCGCCTTCGTCCCACAACAAGCAGCCAGGCGAG
TCCGAGGAGAACATTGGATCCTGGTCAGAGTAGCGACGGGAGTGGCGGTG
GCCCCTGCCGTGCGGGCGTATTATTTGTTAGTTTACTGCGCTTGTGTACT
GGATAGACGCAAATAACATAATGGGAGCGTATGGTCATGGTTGACCTGAG
AATCTACCAGAGCCAAGCAAGCAAAGGTCTCCCTTGTGCTCGCCAGCACT
GACGAGACGAGTCGGATCAGAACTGACCACATTTTGATCTTCTTCATCCT
CCCACCTACACAGCAACATTAAGAAACTCAGGGATGTTTACCATAAGGCG
GTGATGAGAGGCTTTCATAATTCTACCCTCCCTTCACACGGGCTTGGACG
TTGTCCGAGCCAATCGCCAGTCAACCTGCGCCTATCCCCCACACCAGGCT
GACCACATTCTTGTTTCTCTCCTTGTCGGTCCTACCACACATAGATCACA
GTCTCCTATCCCGTTTCCACCGTCACAATGAAGACCTTTGCTGTGCTTAC
GCTGGGTTCTCTGGCCATGTCCCAGGCCTTTATGGCGCCCTCCCCAGCCG
CATTTGGCCCCATCAGCAGATCAGCGGTGCGATCTTCCGCTGGTCGCAGC
ATGAGGATGGAGAACTTTAACCTGCCTGTGGGAGAGGACCAGGCCGAAAA
CGTGCCTACCAGCATGCTGGGCGAGGCCAACTATCGCAAGTTCGTGGCGT
CCTACAAGCCTGATGGCATGATCGTCGGCGGCGCCCGCTACCCCCTGTTC
AGGCGCGTCTCGGAGCTCAAGCTTCTGTCCCTGACTGCCGAGACTGGCCT
CTTGACTCGCCTGGAAGAGTTGGGCCTGAAGTTGAGTGACCTGGAGAAGT
TGCTTCCCTTGGCAGAGGAGCTCCAGTTGTTGCAACTGGCCGAGAAAAAC
CAAGACCTGATTCTCCAGACCCTGGCCCCTATTGCTATCGAACAAGCCCC
TGCCCTCCTCCCCATCCTCACCGCTGTGCTGCGCACGCCTCCCACAACCT
TTTACGCCGTCGCTGCAGCTGCTCTGGCCGCTGAGGCGGGCATTGTCCTC
GTGAGCGGTAACCCTCTGATTGACGTCCTTGCTGGCATCCCCCTTGTGGG
CGTGGCCGCCGTCTCTGCTGTGGCCGGCACCATTCTGTCCTCCGGCATCA
GTGTCCCGTCCGCTGGCCCCCGCAAGATCAGGTCTGTCTCCTCTTCTTCC
TCCTCTGCCGATGTGACCCCGAAGTTCAAGGTCGGTGGCGGTGCCAAGAG
CGGGAGGGTGAAGGCAGCCAAGCCCATTAATGCCCCGgtacgtcctgata
aactcatgtcatttccagagtcaatatctgaacggagtcatcatcctttg
caatttccctctcgtcgctcatccttaagtgaattttgcttcaagtcaac
accaagacaaggaagcgcctctctgatagcacccaaaaccctccccaaca
cttgatacaaatttatgcagGTCGTGACCGTCGCTCCCCCCAAGAAGGCC
TCCGCTCCCGTGGTCAGGGGTCCCCTCTCGGCCCCCGCCCGCAGTGGCGC
TTCCACCGGCGTCAAGGCTCCAGCCCCGAAGGCCGCGCCCGCCGTCAAAA
AGGCTGCCGCTGCACCCAAAGCCGCGCCTGCGGCCAAAAAGGCTACACCC
GCTGCCAAGGCCGCGCCTGCTGTTAAGAAGGCCGCGCCCGCTGCCAAGAA
GGCCGCACCCGCTGCCAAGAAGGCCGCACCCGCTGCCAAGAAGGCCGCAC
CCGCTGCCAAGAAGGTTGCCCCAGCCGCGACTGTCGCCGTGAAGAAAGCT
GCGCCGGCCCCTAAGAAAGCCTCGCCTTTATTGGCGGTCAAGAGGGTCCC
TGTGGCGGCCGGGAAGGGCTCGTTGGGCAACATTCCCAAGGCCAAGAAGT
AAAGCAGTGGAACAAGATAGTGTTTGATTTATTGAAAGGGGCTTCGGATG
TTGCCTGGTGGGCGAAAGATGAAGAAAGGAGGGAGGGAGGCAAGGGAGGA
GGAAAGCACGTACAAGGATGCATGCGCACGCTTTTTTGGTGGTGATCTTT
GCTGGTTTAATGTTCTTCCCGCTCACTGAAGTATAAAATAGCGATCCACG
ATTAGTCATAAAGTGGGAAGGAAAAAATCTGTGGGAAAGAGAGCGCGTGT
GAACGTGCGTGTATGGATGTAAGAGAGGAGTGTCTGCGTCATGTTGCACC
CTCTTCAGACATCCATCTGGTGGGCGGGTGCAGGCTCAAAACTGGATGTG
TTTCTATGTGCTATTTGTCGGGTGGTTTTTGTGTCATCCTTAGTTGGTGG
CCTTCGTGTGCCTAGGGTCTTGCTATTTTGAGTGCATGGGGAAGTAAGGT
AGGAAGGAAGGAGGGGGGGGAGGGCAAGCGAGTGAGGCTGCCTAAATTGA
TATCGGTTTTTTTCGTGCTGCCCAGGCATGCACTTCAACCGCGAAGGAAG
AAAAAAGAAAACATGAGAAACAGCAGGAAACCAACGACAATCAGAAGCTT
GCTTCCTGCTTTGTCAGGTACGATTTGAGCGCTTGAATTCAAGGGGAGGG
G
back to top

protein sequence of NO05G04670.1

>NO05G04670.1-protein ID=NO05G04670.1-protein|Name=NO05G04670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=400bp
MKTFAVLTLGSLAMSQAFMAPSPAAFGPISRSAVRSSAGRSMRMENFNLP
VGEDQAENVPTSMLGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLL
SLTAETGLLTRLEELGLKLSDLEKLLPLAEELQLLQLAEKNQDLILQTLA
PIAIEQAPALLPILTAVLRTPPTTFYAVAAAALAAEAGIVLVSGNPLIDV
LAGIPLVGVAAVSAVAGTILSSGISVPSAGPRKIRSVSSSSSSADVTPKF
KVGGGAKSGRVKAAKPINAPVVTVAPPKKASAPVVRGPLSAPARSGASTG
VKAPAPKAAPAVKKAAAAPKAAPAAKKATPAAKAAPAVKKAAPAAKKAAP
AAKKVAPAATVAVKKAAPAPKKASPLLAVKRVPVAAGKGSLGNIPKAKK*
back to top

protein sequence of NO05G04670.2

>NO05G04670.2-protein ID=NO05G04670.2-protein|Name=NO05G04670.2|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MKTFAVLTLGSLAMSQAFMAPSPAAFGPISRSAVRSSAGRSMRMENFNLP
VGEDQAENVPTSMLGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLL
SLTAETGLLTRLEELGLKLSDLEKLLPLAEELQLLQLAEKNQDLILQTLA
PIAIEQAPALLPILTAVLRTPPTTFYAVAAAALAAEAGIVLVSGNPLIDV
LAGIPLVGVAAVSAVAGTILSSGISVPSAGPRKIRSVSSSSSSADVTPKF
KVGGGAKSGRVKAAKPINAPVVTVAPPKKASAPVVRGPLSAPARSGASTG
VKAPAPKAAPAVKKAAAAPKAAPAAKKATPAAKAAPAVKKAAPAAKKAAP
AAKKAAPAAKKAAPAAKKVAPAATVAVKKAAPAPKKASPLLAVKRVPVAA
GKGSLGNIPKAKK*
back to top
Synonyms
Publications