NO05G04670.1, NO05G04670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04670.1
Unique NameNO05G04670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2476
Alignment locationchr5:1213998..1216698 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1213998..1216698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04670.1 vs.
Match: XP_005855712.1 (hypothetical protein NGA_0605600 [Nannochloropsis gaditana CCMP526]; EKU20634.1 hypothetical protein NGA_0605600 [Nannochloropsis gaditana CCMP526]; EWM27972.1 Protein of unknown function DUF1118 [Nannochloropsis gaditana])

HSP 1 Score: 451.8 bits (1161), Expect = 2.200e-123
Identity = 314/428 (73.36%), Postives = 340/428 (79.44%), Query Frame = 0 
Query:    1 MKTFAVLTLGSLAMSQAFMAPSPAAFGPISRSAVRSSA--GRSMRMENFNLPVGEDQAENVPTSMLGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLLTRLEELGLKLSDLEKLLPLAEELQLLQLAEKNQDLILQTLAPIAIEQAPALLPILTAVLRTPPTTFYAVAAAALAAEAGIVLVSGNPLIDVLAGIPLVGVAAVSAVAGTILSSGISVPSAGPRKIRSVSSSSSSADVTPKFKVGGGAKSGRVKAAKPINAPVVTVAPPKKASAPVVRGPLSAPARSGASTGVKA---PAPKAAPAVK---KAAAAPKAAPAAKKATPAAKAAPAVKKAAPAAKKAAPAAK-----KVAPA----ATVAVKKA----APAPK------KASPLLAVKRVPVAAGKGSLGNIPK--AKK 400
            MKTFAVLTL SLAMSQAF+AP+PAAFG  SRS VRS A   RSM+MENFNLP+GEDQAENVP+++LGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLL+RLEELGL+LSDLEKLLPL EEL+LL LAEKNQ+LILQTLAPIAIEQAPALLPILT VLRTPP TF+AVAAAALAAEAG+VLVSGNPLIDVLAGIPLVG+AAVSA  GTILSSG+ +PSA PR+I   SSS   ADVTP FKVGGG K GRVKAAK + +  V VAPPKK++APVV GPLSAPAR GA T   A   P+ KA PAVK   K+ A P A PA K AT A+ A PA K AA  A K APAAK     K APA    A VAVKKA    APAPK      KASPLL+ K  P A+GKGSL NI K  AKK
Sbjct:    1 MKTFAVLTLVSLAMSQAFLAPTPAAFGS-SRSGVRSMATGARSMKMENFNLPIGEDQAENVPSTILGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPILTGVLRTPPATFFAVAAAALAAEAGVVLVSGNPLIDVLAGIPLVGLAAVSAATGTILSSGVPIPSAAPRRI---SSSGGGADVTPAFKVGGG-KKGRVKAAKVVASAPVAVAPPKKSAAPVVLGPLSAPARGGAPTAPAARPTPSLKAKPAVKPAVKSVAKPAAKPAVKLATKAS-AKPAAKPAAKPAAKPAPAAKKPLGIKAAPAPQKVAAVAVKKAATAPAPAPKAVPAAAKASPLLSAK-APAASGKGSLANIAKKVAKK 421
The following BLAST results are available for this feature:
BLAST of NO05G04670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855712.12.200e-12373.36hypothetical protein NGA_0605600 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04670NO05G04670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04670.1NO05G04670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04670.1.cds1NO05G04670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04670.1.cds2NO05G04670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04670.1.cds3NO05G04670.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04670.1 ID=NO05G04670.1|Name=NO05G04670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2476bp
TGGATGTTTGATAAAAATTGATGGATAAACAGTGGGCTGCATGTTTAAGA
ATCGAATGGAAAAATCATGTCAGTGGGCGATGCGGCAAGGAGTGGCGCAT
TTTCCCTCACGCCTCATTCGCCTTCGTCCCACAACAAGCAGCCAGGCGAG
TCCGAGGAGAACATTGGATCCTGGTCAGAGTAGCGACGGGAGTGGCGGTG
GCCCCTGCCGTGCGGGCGTATTATTTGTTAGTTTACTGCGCTTGTGTACT
GGATAGACGCAAATAACATAATGGGAGCGTATGGTCATGGTTGACCTGAG
AATCTACCAGAGCCAAGCAAGCAAAGGTCTCCCTTGTGCTCGCCAGCACT
GACGAGACGAGTCGGATCAGAACTGACCACATTTTGATCTTCTTCATCCT
CCCACCTACACAGCAACATTAAGAAACTCAGGGATGTTTACCATAAGGCG
GTGATGAGAGGCTTTCATAATTCTACCCTCCCTTCACACGGGCTTGGACG
TTGTCCGAGCCAATCGCCAGTCAACCTGCGCCTATCCCCCACACCAGGCT
GACCACATTCTTGTTTCTCTCCTTGTCGGTCCTACCACACATAGATCACA
GTCTCCTATCCCGTTTCCACCGTCACAATGAAGACCTTTGCTGTGCTTAC
GCTGGGTTCTCTGGCCATGTCCCAGGCCTTTATGGCGCCCTCCCCAGCCG
CATTTGGCCCCATCAGCAGATCAGCGGTGCGATCTTCCGCTGGTCGCAGC
ATGAGGATGGAGAACTTTAACCTGCCTGTGGGAGAGGACCAGGCCGAAAA
CGTGCCTACCAGCATGCTGGGCGAGGCCAACTATCGCAAGTTCGTGGCGT
CCTACAAGCCTGATGGCATGATCGTCGGCGGCGCCCGCTACCCCCTGTTC
AGGCGCGTCTCGGAGCTCAAGCTTCTGTCCCTGACTGCCGAGACTGGCCT
CTTGACTCGCCTGGAAGAGTTGGGCCTGAAGTTGAGTGACCTGGAGAAGT
TGCTTCCCTTGGCAGAGGAGCTCCAGTTGTTGCAACTGGCCGAGAAAAAC
CAAGACCTGATTCTCCAGACCCTGGCCCCTATTGCTATCGAACAAGCCCC
TGCCCTCCTCCCCATCCTCACCGCTGTGCTGCGCACGCCTCCCACAACCT
TTTACGCCGTCGCTGCAGCTGCTCTGGCCGCTGAGGCGGGCATTGTCCTC
GTGAGCGGTAACCCTCTGATTGACGTCCTTGCTGGCATCCCCCTTGTGGG
CGTGGCCGCCGTCTCTGCTGTGGCCGGCACCATTCTGTCCTCCGGCATCA
GTGTCCCGTCCGCTGGCCCCCGCAAGATCAGGTCTGTCTCCTCTTCTTCC
TCCTCTGCCGATGTGACCCCGAAGTTCAAGGTCGGTGGCGGTGCCAAGAG
CGGGAGGGTGAAGGCAGCCAAGCCCATTAATGCCCCGGTCGTGACCGTCG
CTCCCCCCAAGAAGGCCTCCGCTCCCGTGGTCAGGGGTCCCCTCTCGGCC
CCCGCCCGCAGTGGCGCTTCCACCGGCGTCAAGGCTCCAGCCCCGAAGGC
CGCGCCCGCCGTCAAAAAGGCTGCCGCTGCACCCAAAGCCGCGCCTGCGG
CCAAAAAGGCTACACCCGCTGCCAAGGCCGCGCCTGCTGTTAAGAAGGCC
GCGCCCGCTGCCAAGAAGGCCGCACCCGCTGCCAAGAAGGTTGCCCCAGC
CGCGACTGTCGCCGTGAAGAAAGCTGCGCCGGCCCCTAAGAAAGCCTCGC
CTTTATTGGCGGTCAAGAGGGTCCCTGTGGCGGCCGGGAAGGGCTCGTTG
GGCAACATTCCCAAGGCCAAGAAGTAAAGCAGTGGAACAAGATAGTGTTT
GATTTATTGAAAGGGGCTTCGGATGTTGCCTGGTGGGCGAAAGATGAAGA
AAGGAGGGAGGGAGGCAAGGGAGGAGGAAAGCACGTACAAGGATGCATGC
GCACGCTTTTTTGGTGGTGATCTTTGCTGGTTTAATGTTCTTCCCGCTCA
CTGAAGTATAAAATAGCGATCCACGATTAGTCATAAAGTGGGAAGGAAAA
AATCTGTGGGAAAGAGAGCGCGTGTGAACGTGCGTGTATGGATGTAAGAG
AGGAGTGTCTGCGTCATGTTGCACCCTCTTCAGACATCCATCTGGTGGGC
GGGTGCAGGCTCAAAACTGGATGTGTTTCTATGTGCTATTTGTCGGGTGG
TTTTTGTGTCATCCTTAGTTGGTGGCCTTCGTGTGCCTAGGGTCTTGCTA
TTTTGAGTGCATGGGGAAGTAAGGTAGGAAGGAAGGAGGGGGGGGAGGGC
AAGCGAGTGAGGCTGCCTAAATTGATATCGGTTTTTTTCGTGCTGCCCAG
GCATGCACTTCAACCGCGAAGGAAGAAAAAAGAAAACATGAGAAACAGCA
GGAAACCAACGACAATCAGAAGCTTGCTTCCTGCTTTGTCAGGTACGATT
TGAGCGCTTGAATTCAAGGGGAGGGG
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protein sequence of NO05G04670.1

>NO05G04670.1-protein ID=NO05G04670.1-protein|Name=NO05G04670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=400bp
MKTFAVLTLGSLAMSQAFMAPSPAAFGPISRSAVRSSAGRSMRMENFNLP
VGEDQAENVPTSMLGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLL
SLTAETGLLTRLEELGLKLSDLEKLLPLAEELQLLQLAEKNQDLILQTLA
PIAIEQAPALLPILTAVLRTPPTTFYAVAAAALAAEAGIVLVSGNPLIDV
LAGIPLVGVAAVSAVAGTILSSGISVPSAGPRKIRSVSSSSSSADVTPKF
KVGGGAKSGRVKAAKPINAPVVTVAPPKKASAPVVRGPLSAPARSGASTG
VKAPAPKAAPAVKKAAAAPKAAPAAKKATPAAKAAPAVKKAAPAAKKAAP
AAKKVAPAATVAVKKAAPAPKKASPLLAVKRVPVAAGKGSLGNIPKAKK*
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mRNA from alignment at chr5:1213998..1216698+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04670.1 ID=NO05G04670.1|Name=NO05G04670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2701bp|location=Sequence derived from alignment at chr5:1213998..1216698+ (Nannochloropsis oceanica)
TGGATGTTTGATAAAAATTGATGGATAAACAGTGGGCTGCATGTTTAAGA
ATCGAATGGAAAAATCATGTCAGTGGGCGATGCGGCAAGGAGTGGCGCAT
TTTCCCTCACGCCTCATTCGCCTTCGTCCCACAACAAGCAGCCAGGCGAG
TCCGAGGAGAACATTGGATCCTGGTCAGAGTAGCGACGGGAGTGGCGGTG
GCCCCTGCCGTGCGGGCGTATTATTTGTTAGTTTACTGCGCTTGTGTACT
GGATAGACGCAAATAACATAATGGGAGCGTATGGTCATGGTTGACCTGAG
AATCTACCAGAGCCAAGCAAGCAAAGGTCTCCCTTGTGCTCGCCAGCACT
GACGAGACGAGTCGGATCAGAACTGACCACATTTTGATCTTCTTCATCCT
CCCACCTACACAGCAACATTAAGAAACTCAGGGATGTTTACCATAAGGCG
GTGATGAGAGGCTTTCATAATTCTACCCTCCCTTCACACGGGCTTGGACG
TTGTCCGAGCCAATCGCCAGTCAACCTGCGCCTATCCCCCACACCAGGCT
GACCACATTCTTGTTTCTCTCCTTGTCGGTCCTACCACACATAGATCACA
GTCTCCTATCCCGTTTCCACCGTCACAATGAAGACCTTTGCTGTGCTTAC
GCTGGGTTCTCTGGCCATGTCCCAGGCCTTTATGGCGCCCTCCCCAGCCG
CATTTGGCCCCATCAGCAGATCAGCGGTGCGATCTTCCGCTGGTCGCAGC
ATGAGGATGGAGAACTTTAACCTGCCTGTGGGAGAGGACCAGGCCGAAAA
CGTGCCTACCAGCATGCTGGGCGAGGCCAACTATCGCAAGTTCGTGGCGT
CCTACAAGCCTGATGGCATGATCGTCGGCGGCGCCCGCTACCCCCTGTTC
AGGCGCGTCTCGGAGCTCAAGCTTCTGTCCCTGACTGCCGAGACTGGCCT
CTTGACTCGCCTGGAAGAGTTGGGCCTGAAGTTGAGTGACCTGGAGAAGT
TGCTTCCCTTGGCAGAGGAGCTCCAGTTGTTGCAACTGGCCGAGAAAAAC
CAAGACCTGATTCTCCAGACCCTGGCCCCTATTGCTATCGAACAAGCCCC
TGCCCTCCTCCCCATCCTCACCGCTGTGCTGCGCACGCCTCCCACAACCT
TTTACGCCGTCGCTGCAGCTGCTCTGGCCGCTGAGGCGGGCATTGTCCTC
GTGAGCGGTAACCCTCTGATTGACGTCCTTGCTGGCATCCCCCTTGTGGG
CGTGGCCGCCGTCTCTGCTGTGGCCGGCACCATTCTGTCCTCCGGCATCA
GTGTCCCGTCCGCTGGCCCCCGCAAGATCAGGTCTGTCTCCTCTTCTTCC
TCCTCTGCCGATGTGACCCCGAAGTTCAAGGTCGGTGGCGGTGCCAAGAG
CGGGAGGGTGAAGGCAGCCAAGCCCATTAATGCCCCGGTACGTCCTGATA
AACTCATGTCATTTCCAGAGTCAATATCTGAACGGAGTCATCATCCTTTG
CAATTTCCCTCTCGTCGCTCATCCTTAAGTGAATTTTGCTTCAAGTCAAC
ACCAAGACAAGGAAGCGCCTCTCTGATAGCACCCAAAACCCTCCCCAACA
CTTGATACAAATTTATGCAGGTCGTGACCGTCGCTCCCCCCAAGAAGGCC
TCCGCTCCCGTGGTCAGGGGTCCCCTCTCGGCCCCCGCCCGCAGTGGCGC
TTCCACCGGCGTCAAGGCTCCAGCCCCGAAGGCCGCGCCCGCCGTCAAAA
AGGCTGCCGCTGCACCCAAAGCCGCGCCTGCGGCCAAAAAGGCTACACCC
GCTGCCAAGGCCGCGCCTGCTGTTAAGAAGGCCGCGCCCGCTGCCAAGAA
GGCCGCACCCGCTGCCAAGAAGGCCGCACCCGCTGCCAAGAAGGCCGCAC
CCGCTGCCAAGAAGGTTGCCCCAGCCGCGACTGTCGCCGTGAAGAAAGCT
GCGCCGGCCCCTAAGAAAGCCTCGCCTTTATTGGCGGTCAAGAGGGTCCC
TGTGGCGGCCGGGAAGGGCTCGTTGGGCAACATTCCCAAGGCCAAGAAGT
AAAGCAGTGGAACAAGATAGTGTTTGATTTATTGAAAGGGGCTTCGGATG
TTGCCTGGTGGGCGAAAGATGAAGAAAGGAGGGAGGGAGGCAAGGGAGGA
GGAAAGCACGTACAAGGATGCATGCGCACGCTTTTTTGGTGGTGATCTTT
GCTGGTTTAATGTTCTTCCCGCTCACTGAAGTATAAAATAGCGATCCACG
ATTAGTCATAAAGTGGGAAGGAAAAAATCTGTGGGAAAGAGAGCGCGTGT
GAACGTGCGTGTATGGATGTAAGAGAGGAGTGTCTGCGTCATGTTGCACC
CTCTTCAGACATCCATCTGGTGGGCGGGTGCAGGCTCAAAACTGGATGTG
TTTCTATGTGCTATTTGTCGGGTGGTTTTTGTGTCATCCTTAGTTGGTGG
CCTTCGTGTGCCTAGGGTCTTGCTATTTTGAGTGCATGGGGAAGTAAGGT
AGGAAGGAAGGAGGGGGGGGAGGGCAAGCGAGTGAGGCTGCCTAAATTGA
TATCGGTTTTTTTCGTGCTGCCCAGGCATGCACTTCAACCGCGAAGGAAG
AAAAAAGAAAACATGAGAAACAGCAGGAAACCAACGACAATCAGAAGCTT
GCTTCCTGCTTTGTCAGGTACGATTTGAGCGCTTGAATTCAAGGGGAGGG
G
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Coding sequence (CDS) from alignment at chr5:1213998..1216698+

>NO05G04670.1 ID=NO05G04670.1|Name=NO05G04670.1|organism=Nannochloropsis oceanica|type=CDS|length=1200bp|location=Sequence derived from alignment at chr5:1213998..1216698+ (Nannochloropsis oceanica)
ATGAAGACCTTTGCTGTGCTTACGCTGGGTTCTCTGGCCATGTCCCAGGC
CTTTATGGCGCCCTCCCCAGCCGCATTTGGCCCCATCAGCAGATCAGCGG
TGCGATCTTCCGCTGGTCGCAGCATGAGGATGGAGAACTTTAACCTGCCT
GTGGGAGAGGACCAGGCCGAAAACGTGCCTACCAGCATGCTGGGCGAGGC
CAACTATCGCAAGTTCGTGGCGTCCTACAAGCCTGATGGCATGATCGTCG
GCGGCGCCCGCTACCCCCTGTTCAGGCGCGTCTCGGAGCTCAAGCTTCTG
TCCCTGACTGCCGAGACTGGCCTCTTGACTCGCCTGGAAGAGTTGGGCCT
GAAGTTGAGTGACCTGGAGAAGTTGCTTCCCTTGGCAGAGGAGCTCCAGT
TGTTGCAACTGGCCGAGAAAAACCAAGACCTGATTCTCCAGACCCTGGCC
CCTATTGCTATCGAACAAGCCCCTGCCCTCCTCCCCATCCTCACCGCTGT
GCTGCGCACGCCTCCCACAACCTTTTACGCCGTCGCTGCAGCTGCTCTGG
CCGCTGAGGCGGGCATTGTCCTCGTGAGCGGTAACCCTCTGATTGACGTC
CTTGCTGGCATCCCCCTTGTGGGCGTGGCCGCCGTCTCTGCTGTGGCCGG
CACCATTCTGTCCTCCGGCATCAGTGTCCCGTCCGCTGGCCCCCGCAAGA
TCAGGTCTGTCTCCTCTTCTTCCTCCTCTGCCGATGTGACCCCGAAGTTC
AAGGTCGGTGGCGGTGCCAAGAGCGGGAGGGTGAAGGCAGCCAAGCCCAT
TAATGCCCCGGTCGTGACCGTCGCTCCCCCCAAGAAGGCCTCCGCTCCCG
TGGTCAGGGGTCCCCTCTCGGCCCCCGCCCGCAGTGGCGCTTCCACCGGC
GTCAAGGCTCCAGCCCCGAAGGCCGCGCCCGCCGTCAAAAAGGCTGCCGC
TGCACCCAAAGCCGCGCCTGCGGCCAAAAAGGCTACACCCGCTGCCAAGG
CCGCGCCTGCTGTTAAGAAGGCCGCGCCCGCTGCCAAGAAGGCCGCACCC
GCTGCCAAGAAGGTTGCCCCAGCCGCGACTGTCGCCGTGAAGAAAGCTGC
GCCGGCCCCTAAGAAAGCCTCGCCTTTATTGGCGGTCAAGAGGGTCCCTG
TGGCGGCCGGGAAGGGCTCGTTGGGCAACATTCCCAAGGCCAAGAAGTAA
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Synonyms
Publications