NO05G04250, NO05G04250 (gene) Nannochloropsis oceanica

Overview
NameNO05G04250
Unique NameNO05G04250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2285
Alignment locationchr5:1094134..1096418 -

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Properties
Property NameValue
DescriptionCytochrome c oxidase assembly protein COX19
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1094134..1096418 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G04250 vs. NCBI_GenBank
Match: XP_009516780.1 (hypothetical protein PHYSODRAFT_294636 [Phytophthora sojae] >EGZ29505.1 hypothetical protein PHYSODRAFT_294636 [Phytophthora sojae])

HSP 1 Score: 65.9 bits (159), Expect = 9.700e-8
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 0 
Query:   21 QCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGGTGVKGSR 111
            +C+     FL C+  +   +  CK LS  YLQCRM+K LMQ E+L KLGF E  EG ++   +KT      + ++E EGFV G G+K  R
Sbjct:   26 ECKPAMKAFLACMREHGNSHIDCKKLSADYLQCRMDKGLMQPEELEKLGFHE--EGMKKTWTNKTN-----EGRKEVEGFVAGMGIKKPR 108
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BLAST of NO05G04250 vs. NCBI_GenBank
Match: KUF96787.1 (Sperm flagellar protein 2 [Phytophthora nicotianae])

HSP 1 Score: 64.7 bits (156), Expect = 2.200e-7
Identity = 41/100 (41.00%), Postives = 55/100 (55.00%), Query Frame = 0 
Query:   21 QCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEK----------NLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGGTGVKGSR 111
            +C+    EFL C+  +   +  CK LS AYLQCRM+K           LM+ E+L KLGF E  EG +     KT  E+  + ++E EGFV G G+K SR
Sbjct:   26 ECKPAMKEFLACMREHSNSHIDCKKLSAAYLQCRMDKCGNNYFCACRGLMKPEELEKLGFHE--EGMK-----KTWTEETNEGRKEGEGFVAGLGIKKSR 118
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BLAST of NO05G04250 vs. NCBI_GenBank
Match: PRW58254.1 (cytochrome c oxidase assembly COX19-like [Chlorella sorokiniana])

HSP 1 Score: 64.7 bits (156), Expect = 2.200e-7
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = 0 
Query:   21 QCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGG 104
            +C+++  ++L C++SN  D  AC++L+KAYL+CRM++NLM K+DL  LGF    EG+  A     + +K   R+ E EG++ G
Sbjct:   30 ECKSIKEQYLECLKSNGSDSDACRELAKAYLKCRMDRNLMAKQDLKDLGF---AEGEAPAPAKPKQQDK-PKRRIETEGYLAG 108
[Close]
BLAST of NO05G04250 vs. NCBI_GenBank
Match: PSC75168.1 (cytochrome c oxidase assembly COX19-like [Micractinium conductrix])

HSP 1 Score: 63.2 bits (152), Expect = 6.300e-7
Identity = 25/52 (48.08%), Postives = 40/52 (76.92%), Query Frame = 0 
Query:   21 QCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEE 73
            +C+++  ++L C+  + +D  AC+DL+KAYL+CRM++NLM K+DL  LGF E
Sbjct:   30 ECKSIKEQYLECLREHGQDSEACRDLAKAYLKCRMDRNLMAKQDLRDLGFAE 81
[Close]
BLAST of NO05G04250 vs. NCBI_GenBank
Match: ETS64178.1 (hypothetical protein PaG_01414 [Moesziomyces aphidis DSM 70725])

HSP 1 Score: 62.8 bits (151), Expect = 8.200e-7
Identity = 24/51 (47.06%), Postives = 39/51 (76.47%), Query Frame = 0 
Query:   21 QCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFE 72
            +C++V  E++ CI++++ D   C+ LSKAYLQCRM+K LM ++D+  LGF+
Sbjct:   29 ECKSVMQEYMACIKAHRNDNGKCRHLSKAYLQCRMDKGLMDRDDMDNLGFK 79
The following BLAST results are available for this feature:
BLAST of NO05G04250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 15
Match NameE-valueIdentityDescription
XP_009516780.19.700e-842.22hypothetical protein PHYSODRAFT_294636 [Phytophtho... [more]
KUF96787.12.200e-741.00Sperm flagellar protein 2 [Phytophthora nicotianae... [more]
PRW58254.12.200e-740.96cytochrome c oxidase assembly COX19-like [Chlorell... [more]
PSC75168.16.300e-748.08cytochrome c oxidase assembly COX19-like [Micracti... [more]
ETS64178.18.200e-747.06hypothetical protein PaG_01414 [Moesziomyces aphid... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585041gene_3238Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04250.3NO05G04250.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G04250.2NO05G04250.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G04250.1NO05G04250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04250.3NO05G04250.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G04250.2NO05G04250.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G04250.1NO05G04250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04250 ID=NO05G04250|Name=NO05G04250|organism=Nannochloropsis oceanica|type=gene|length=2285bp
AGGAGGAGGAGGAGGAGGAGGAGGAAGGAAGGAAGAAGAAAGGCAACACC
CGCTTCCGAATCACGCCCTTATACTGCGTGCGGGCCGTGAGCTCTTGCCC
AAGGTAGCAGCCTTTGTGAAAATTAATGGCATGAGTTAAATCGAGGTTAC
ATTCCGAAGGCAACCGTTCAACCAAGTCTGGCCCTTCCCCAACCCCATGC
AAAAAACGCAGTGCCTCATAAACTTCGCGTGGCTGCTGCTGGTGCTCCTG
CTGTTGCTGCTGCGAGCAAAAAAAGGGAAAGGCAGGGGAGGGTGTAACGA
TTGCACGAATGCCCAAAGGATGTTGTCCCGGCAAGGCAATCCGAGGGTCG
GGTCCGAGCCCCAGGACCTCTTCTCCTCGTCCTGTCCAATGCTTCTTCAC
CACATCTAGATCCACGAGTACCTCGTCCGGCAAGCCCAGCACCACGCACA
CCCTCGCCGTGGCCGTCAGATCAGTTATCTGCACTTTGGCACGAAGTTTG
AACAGGCGCAAATGACGGAGGAGTCCTTCTTTAACCTCCACAGGAAGGTC
TAGGAAGAATTTGTCAGGGCCACCATGCGGCGCTTCCTTGGCGTCGGTCG
CAATGGTTATGACACTCTCCGTAATCACCCGTCCTTTATTCGTCAAAAAT
GCCGCTGCCAACGATGCTTTTGCTTCGGTCAAATGGACAATGTCGTTCGT
GATTAGACCTTGCACAAGCTTGGGAGCATCGGGCCCTGCCAGTTGGAGGA
TGCACCGCTTGCCATTGCTCTCCCCGCGAGTCAGGTCCACTTCCCAGATG
CCGCCTGATCTGTTGGTTGCCATGACATGAGGGTCCCATCTTGTTGGGAT
TGTGCTGCTGCTGCTGAGCCGTCTTGGTGTTTTAGGTGCCTACGGAGGTG
TTAAGGGGATAAATTACAAGATGAAGATGATGGCTCGTGGGCAGAGGCGG
GGCAGAGGGTAGTAGGGAGTGTTTTACTTTCGAGGAGCAGGGGCTTGTTC
GAAGGAGAAACCATACTATCAGGACAAGCATTTTAGACTGAAGTGTGTAA
GACCTGGACGGGACGACGACGGAGCGACGGGTTCTTTCAAGGTGAATGAA
AGTGCCACGTACCCGTAAAATTGAAGCCGCTGTGGCGGACGCACTGGCAC
ACTGCAGCCAGGACGCAGCTACTCTCCGTCTTGTCGTAGAGGTGGAAGAA
TGCATGGGCTGTGTCGTGGTATTTGATGGGGTGTATATGTAAGGGGCGTG
GGTATTTTTAGGCAGCATGTAATGAGCTTCCAAGGCACATATCCTTGCTT
CATCAGCGAGTACCCGCCTCGTCCTCTTAGCAAGAGGCTCTTGCTTGTGA
TGCCACATATTCTCATTCCCAACTACACCCGGCACCACCACAACTATAGG
CTTTGATTCGACATTTCGCATGAATCCATTTGGCGGCGCAAGTATCCAAG
CGAAGCCACCAGAGAAGGGGAGCTTTCCGCTGGACCGGGCAGGCCAGGTA
TATGAGGCGAGGGGAAGGAGTTGAGGGAAGGGTACAAAAAAAACGACGCC
TTGGAGGGCCTGGCGAGAGTGACAGAATCGCAGATTAAAAAGGACGTAGC
ACGTGTGACCAGCTTTCTTGCGTATGTCTGTGCCAGCATTCAAGTCCAAA
CGACTCATCATACCGCTCCTACCTTTAAACTCGCAGTGCCGAGCCGTGGC
TCACGAATTCCTGGGGTGCATCGAGAGCAACAAGCGGGATTATTCGGCCT
GTAAAGATTTATCAAAAGCGTATTTGCAGTGTCGAATGGAAAAGgttagt
cagtgtgtaaggaaggggagtggtgcaggccgaactgtgtatgtgtgggg
tgtgactattttagaatatctgacaaacgccaaagtgacggacaggtgca
ctaattcacggtctccctgcaacactttaattatgatagAATCTGATGCA
AAAGGAAGACTTGAGCAAGCTCGGCTTCGAGGAAAAGCGAGAAGGGCAAG
AGGAGGCCAAGGAGGACAAGACCAGgtacgtaggaaatgaattagataag
gcatttcagaaaaggaaaatgctaattccaaccccctcacttgtcgtttt
ttgaacagAGATGAGAAATTTTACGATCGGAAGCGAGAAGCGGAGGGCTT
TGTGGGTGGCACCGGGGTCAAGGGCTCGCGCAAAGGCTATTTTTCTTGAG
CGAGGTGTGTACAAAGAGCGTGTAGGCGGATAAATTGTATTACAAACCAG
AAAGAAAATCAAAGCATATGGCATTTCAACAGAAG
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protein sequence of NO05G04250.3

>NO05G04250.3-protein ID=NO05G04250.3-protein|Name=NO05G04250.3|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MSVPAFKSKRLIIPLLPLNSQCRAVAHEFLGCIESNKRDYSACKDLSKAY
LQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRYVGNELDKAFQKRK
MLIPTPSLVVF*
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protein sequence of NO05G04250.2

>NO05G04250.2-protein ID=NO05G04250.2-protein|Name=NO05G04250.2|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MSVPAFKSKRLIIPLLPLNSQCRAVAHEFLGCIESNKRDYSACKDLSKAY
LQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGF
VGGTGVKGSRKGYFS*
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protein sequence of NO05G04250.1

>NO05G04250.1-protein ID=NO05G04250.1-protein|Name=NO05G04250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MNPFGGASIQAKPPEKGSFPLDRAGQCRAVAHEFLGCIESNKRDYSACKD
LSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKR
EAEGFVGGTGVKGSRKGYFS*
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Synonyms
Publications