NO05G04250.2, NO05G04250.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04250.2
Unique NameNO05G04250.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2057
Alignment locationchr5:1094134..1096418 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1094134..1096418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04250.2 vs.
Match: XP_024586843.1 (related to cox19-cytochrome c oxidase assembly protein [Plasmopara halstedii]; CEG50474.1 related to cox19-cytochrome c oxidase assembly protein [Plasmopara halstedii])

HSP 1 Score: 73.6 bits (179), Expect = 4.700e-10
Identity = 43/96 (44.79%), Postives = 58/96 (60.42%), Query Frame = 0 
Query:   21 QCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGGTGVKGSR--KGYF 115
            +C+    EFL C+  +   +  CK LS +YLQCRM+K LMQ E+L KLGF E  EG ++  +DKT      + ++E EGFV G G+K  R  KG F
Sbjct:   26 ECKPAMKEFLACMRKHGNSHIDCKQLSASYLQCRMDKGLMQSEELEKLGFHE--EGMKKTWKDKTN-----EGRKEGEGFVAGLGIKKGRYEKGGF 114
The following BLAST results are available for this feature:
BLAST of NO05G04250.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_024586843.14.700e-1044.79related to cox19-cytochrome c oxidase assembly pro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04250NO05G04250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04250.2NO05G04250.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04250.2.cds1NO05G04250.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04250.2.cds2NO05G04250.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04250.2.cds3NO05G04250.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04250.2 ID=NO05G04250.2|Name=NO05G04250.2|organism=Nannochloropsis oceanica|type=mRNA|length=2057bp
AGGAGGAGGAGGAGGAGGAGGAGGAAGGAAGGAAGAAGAAAGGCAACACC
CGCTTCCGAATCACGCCCTTATACTGCGTGCGGGCCGTGAGCTCTTGCCC
AAGGTAGCAGCCTTTGTGAAAATTAATGGCATGAGTTAAATCGAGGTTAC
ATTCCGAAGGCAACCGTTCAACCAAGTCTGGCCCTTCCCCAACCCCATGC
AAAAAACGCAGTGCCTCATAAACTTCGCGTGGCTGCTGCTGGTGCTCCTG
CTGTTGCTGCTGCGAGCAAAAAAAGGGAAAGGCAGGGGAGGGTGTAACGA
TTGCACGAATGCCCAAAGGATGTTGTCCCGGCAAGGCAATCCGAGGGTCG
GGTCCGAGCCCCAGGACCTCTTCTCCTCGTCCTGTCCAATGCTTCTTCAC
CACATCTAGATCCACGAGTACCTCGTCCGGCAAGCCCAGCACCACGCACA
CCCTCGCCGTGGCCGTCAGATCAGTTATCTGCACTTTGGCACGAAGTTTG
AACAGGCGCAAATGACGGAGGAGTCCTTCTTTAACCTCCACAGGAAGGTC
TAGGAAGAATTTGTCAGGGCCACCATGCGGCGCTTCCTTGGCGTCGGTCG
CAATGGTTATGACACTCTCCGTAATCACCCGTCCTTTATTCGTCAAAAAT
GCCGCTGCCAACGATGCTTTTGCTTCGGTCAAATGGACAATGTCGTTCGT
GATTAGACCTTGCACAAGCTTGGGAGCATCGGGCCCTGCCAGTTGGAGGA
TGCACCGCTTGCCATTGCTCTCCCCGCGAGTCAGGTCCACTTCCCAGATG
CCGCCTGATCTGTTGGTTGCCATGACATGAGGGTCCCATCTTGTTGGGAT
TGTGCTGCTGCTGCTGAGCCGTCTTGGTGTTTTAGGTGCCTACGGAGGTG
TTAAGGGGATAAATTACAAGATGAAGATGATGGCTCGTGGGCAGAGGCGG
GGCAGAGGGTAGTAGGGAGTGTTTTACTTTCGAGGAGCAGGGGCTTGTTC
GAAGGAGAAACCATACTATCAGGACAAGCATTTTAGACTGAAGTGTGTAA
GACCTGGACGGGACGACGACGGAGCGACGGGTTCTTTCAAGGTGAATGAA
AGTGCCACGTACCCGTAAAATTGAAGCCGCTGTGGCGGACGCACTGGCAC
ACTGCAGCCAGGACGCAGCTACTCTCCGTCTTGTCGTAGAGGTGGAAGAA
TGCATGGGCTGTGTCGTGGTATTTGATGGGGTGTATATGTAAGGGGCGTG
GGTATTTTTAGGCAGCATGTAATGAGCTTCCAAGGCACATATCCTTGCTT
CATCAGCGAGTACCCGCCTCGTCCTCTTAGCAAGAGGCTCTTGCTTGTGA
TGCCACATATTCTCATTCCCAACTACACCCGGCACCACCACAACTATAGG
CTTTGATTCGACATTTCGCATGAATCCATTTGGCGGCGCAAGTATCCAAG
CGAAGCCACCAGAGAAGGGGAGCTTTCCGCTGGACCGGGCAGGCCAGGTA
TATGAGGCGAGGGGAAGGAGTTGAGGGAAGGGTACAAAAAAAACGACGCC
TTGGAGGGCCTGGCGAGAGTGACAGAATCGCAGATTAAAAAGGACGTAGC
ACGTGTGACCAGCTTTCTTGCGTATGTCTGTGCCAGCATTCAAGTCCAAA
CGACTCATCATACCGCTCCTACCTTTAAACTCGCAGTGCCGAGCCGTGGC
TCACGAATTCCTGGGGTGCATCGAGAGCAACAAGCGGGATTATTCGGCCT
GTAAAGATTTATCAAAAGCGTATTTGCAGTGTCGAATGGAAAAGAATCTG
ATGCAAAAGGAAGACTTGAGCAAGCTCGGCTTCGAGGAAAAGCGAGAAGG
GCAAGAGGAGGCCAAGGAGGACAAGACCAGAGATGAGAAATTTTACGATC
GGAAGCGAGAAGCGGAGGGCTTTGTGGGTGGCACCGGGGTCAAGGGCTCG
CGCAAAGGCTATTTTTCTTGAGCGAGGTGTGTACAAAGAGCGTGTAGGCG
GATAAATTGTATTACAAACCAGAAAGAAAATCAAAGCATATGGCATTTCA
ACAGAAG
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protein sequence of NO05G04250.2

>NO05G04250.2-protein ID=NO05G04250.2-protein|Name=NO05G04250.2|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MSVPAFKSKRLIIPLLPLNSQCRAVAHEFLGCIESNKRDYSACKDLSKAY
LQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGF
VGGTGVKGSRKGYFS*
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mRNA from alignment at chr5:1094134..1096418-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04250.2 ID=NO05G04250.2|Name=NO05G04250.2|organism=Nannochloropsis oceanica|type=mRNA|length=2285bp|location=Sequence derived from alignment at chr5:1094134..1096418- (Nannochloropsis oceanica)
AGGAGGAGGAGGAGGAGGAGGAGGAAGGAAGGAAGAAGAAAGGCAACACC
CGCTTCCGAATCACGCCCTTATACTGCGTGCGGGCCGTGAGCTCTTGCCC
AAGGTAGCAGCCTTTGTGAAAATTAATGGCATGAGTTAAATCGAGGTTAC
ATTCCGAAGGCAACCGTTCAACCAAGTCTGGCCCTTCCCCAACCCCATGC
AAAAAACGCAGTGCCTCATAAACTTCGCGTGGCTGCTGCTGGTGCTCCTG
CTGTTGCTGCTGCGAGCAAAAAAAGGGAAAGGCAGGGGAGGGTGTAACGA
TTGCACGAATGCCCAAAGGATGTTGTCCCGGCAAGGCAATCCGAGGGTCG
GGTCCGAGCCCCAGGACCTCTTCTCCTCGTCCTGTCCAATGCTTCTTCAC
CACATCTAGATCCACGAGTACCTCGTCCGGCAAGCCCAGCACCACGCACA
CCCTCGCCGTGGCCGTCAGATCAGTTATCTGCACTTTGGCACGAAGTTTG
AACAGGCGCAAATGACGGAGGAGTCCTTCTTTAACCTCCACAGGAAGGTC
TAGGAAGAATTTGTCAGGGCCACCATGCGGCGCTTCCTTGGCGTCGGTCG
CAATGGTTATGACACTCTCCGTAATCACCCGTCCTTTATTCGTCAAAAAT
GCCGCTGCCAACGATGCTTTTGCTTCGGTCAAATGGACAATGTCGTTCGT
GATTAGACCTTGCACAAGCTTGGGAGCATCGGGCCCTGCCAGTTGGAGGA
TGCACCGCTTGCCATTGCTCTCCCCGCGAGTCAGGTCCACTTCCCAGATG
CCGCCTGATCTGTTGGTTGCCATGACATGAGGGTCCCATCTTGTTGGGAT
TGTGCTGCTGCTGCTGAGCCGTCTTGGTGTTTTAGGTGCCTACGGAGGTG
TTAAGGGGATAAATTACAAGATGAAGATGATGGCTCGTGGGCAGAGGCGG
GGCAGAGGGTAGTAGGGAGTGTTTTACTTTCGAGGAGCAGGGGCTTGTTC
GAAGGAGAAACCATACTATCAGGACAAGCATTTTAGACTGAAGTGTGTAA
GACCTGGACGGGACGACGACGGAGCGACGGGTTCTTTCAAGGTGAATGAA
AGTGCCACGTACCCGTAAAATTGAAGCCGCTGTGGCGGACGCACTGGCAC
ACTGCAGCCAGGACGCAGCTACTCTCCGTCTTGTCGTAGAGGTGGAAGAA
TGCATGGGCTGTGTCGTGGTATTTGATGGGGTGTATATGTAAGGGGCGTG
GGTATTTTTAGGCAGCATGTAATGAGCTTCCAAGGCACATATCCTTGCTT
CATCAGCGAGTACCCGCCTCGTCCTCTTAGCAAGAGGCTCTTGCTTGTGA
TGCCACATATTCTCATTCCCAACTACACCCGGCACCACCACAACTATAGG
CTTTGATTCGACATTTCGCATGAATCCATTTGGCGGCGCAAGTATCCAAG
CGAAGCCACCAGAGAAGGGGAGCTTTCCGCTGGACCGGGCAGGCCAGGTA
TATGAGGCGAGGGGAAGGAGTTGAGGGAAGGGTACAAAAAAAACGACGCC
TTGGAGGGCCTGGCGAGAGTGACAGAATCGCAGATTAAAAAGGACGTAGC
ACGTGTGACCAGCTTTCTTGCGTATGTCTGTGCCAGCATTCAAGTCCAAA
CGACTCATCATACCGCTCCTACCTTTAAACTCGCAGTGCCGAGCCGTGGC
TCACGAATTCCTGGGGTGCATCGAGAGCAACAAGCGGGATTATTCGGCCT
GTAAAGATTTATCAAAAGCGTATTTGCAGTGTCGAATGGAAAAGGTTAGT
CAGTGTGTAAGGAAGGGGAGTGGTGCAGGCCGAACTGTGTATGTGTGGGG
TGTGACTATTTTAGAATATCTGACAAACGCCAAAGTGACGGACAGGTGCA
CTAATTCACGGTCTCCCTGCAACACTTTAATTATGATAGAATCTGATGCA
AAAGGAAGACTTGAGCAAGCTCGGCTTCGAGGAAAAGCGAGAAGGGCAAG
AGGAGGCCAAGGAGGACAAGACCAGGTACGTAGGAAATGAATTAGATAAG
GCATTTCAGAAAAGGAAAATGCTAATTCCAACCCCCTCACTTGTCGTTTT
TTGAACAGAGATGAGAAATTTTACGATCGGAAGCGAGAAGCGGAGGGCTT
TGTGGGTGGCACCGGGGTCAAGGGCTCGCGCAAAGGCTATTTTTCTTGAG
CGAGGTGTGTACAAAGAGCGTGTAGGCGGATAAATTGTATTACAAACCAG
AAAGAAAATCAAAGCATATGGCATTTCAACAGAAG
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Coding sequence (CDS) from alignment at chr5:1094134..1096418-

>NO05G04250.2 ID=NO05G04250.2|Name=NO05G04250.2|organism=Nannochloropsis oceanica|type=CDS|length=348bp|location=Sequence derived from alignment at chr5:1094134..1096418- (Nannochloropsis oceanica)
ATGTCTGTGCCAGCATTCAAGTCCAAACGACTCATCATACCGCTCCTACC
TTTAAACTCGCAGTGCCGAGCCGTGGCTCACGAATTCCTGGGGTGCATCG
AGAGCAACAAGCGGGATTATTCGGCCTGTAAAGATTTATCAAAAGCGTAT
TTGCAGTGTCGAATGGAAAAGAATCTGATGCAAAAGGAAGACTTGAGCAA
GCTCGGCTTCGAGGAAAAGCGAGAAGGGCAAGAGGAGGCCAAGGAGGACA
AGACCAGAGATGAGAAATTTTACGATCGGAAGCGAGAAGCGGAGGGCTTT
GTGGGTGGCACCGGGGTCAAGGGCTCGCGCAAAGGCTATTTTTCTTGA
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Synonyms
Publications