NO05G03990, NO05G03990 (gene) Nannochloropsis oceanica

Overview
NameNO05G03990
Unique NameNO05G03990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1446
Alignment locationchr5:1032025..1033470 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1032025..1033470 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G03990 vs. NCBI_GenBank
Match: EWM28026.1 (hypothetical protein Naga_100008g46 [Nannochloropsis gaditana])

HSP 1 Score: 255.8 bits (652), Expect = 1.700e-64
Identity = 132/207 (63.77%), Postives = 150/207 (72.46%), Query Frame = 0 
Query:   77 SSASDTSTTAQGKEKRMDKVASESKEEEPATTPELPTPLFSSPAPRFFRLLAGASLTQVAFWTSYAFLPAELSGSMGYWGIFGSGAFVLIARHFAM-----------------------HYVWEMDQISPVAFRICTHTFWGNKGPERIVQIGTTKCQHTSRYIAAKVKGDSFYYLLDIKEGKFATNESEEQILRIFHGLRTDVHGR 261
            +S     T ++G  KRM   ++E  E+ P   P+   PLF  PA RFFRLLA ASLTQV FWTSYAFLP+ELSGSM YWGI GSGAFVLIARHFAM                       HYVWEMDQISPVAFRI THTFWGNKGP+RIVQIGT++CQHTSRYIAAK+KGDSFYYLLDIKEGKF +  ++EQI+R+F GLRTD  G+
Sbjct:  128 TSLPSPETASKGDGKRMPDESAEEGEKHP---PDSSPPLFLCPAQRFFRLLAAASLTQVTFWTSYAFLPSELSGSMSYWGIVGSGAFVLIARHFAMVCCDCSPLRIFPRPIISFDTFLQHYVWEMDQISPVAFRIATHTFWGNKGPDRIVQIGTSQCQHTSRYIAAKIKGDSFYYLLDIKEGKFGSENAKEQIIRMFQGLRTDAQGQ 331
The following BLAST results are available for this feature:
BLAST of NO05G03990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28026.11.700e-6463.77hypothetical protein Naga_100008g46 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003460NSK003460Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03990.1NO05G03990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584931gene_3209Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g46gene2560Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03990.1NO05G03990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03990 ID=NO05G03990|Name=NO05G03990|organism=Nannochloropsis oceanica|type=gene|length=1446bp
ATGATGATGCGGCGTGGAGTATTGCAGAGTGGAAAGGGACTTGTAGTCCA
GTGCGGTTTGGGCGCGCGAAGGGGCCTTCAGTATTGTAGCAGTTGCGGTA
GCAGCCGTGCCCTCCTGATGCCCTCCCTACCATCAAGCTTTCACGCATCA
TCTCGTCAACATCGACACACCATGCCCATGGCGGCGTGGTTCCAGCGTTA
CTATGGTGGAAAAGCCAGGGCTTTGAGTTCGTCAGCTAGTGATACGTCCA
CAACCGCGCAGGGGAAGGAGAAACGGATGGACAAGGTAGCAAGCGAGTCC
AAAGAGGAGGAGCCAGCAACGACACCAGAGCTTCCCACACCGCTTTTTTC
TAGTCCTGCACCGgtatgtgagtggatgagaaagcgaatattgcggtgta
tatgaaaatttgctaatctccatgctgttggtcactatttgtctctccgt
caatctctaacaatccaaacatccattgctcacgccctgtcatgcacaca
tcctcttattgaatcaatccagCGTTTTTTCCGCCTTCTCGCGGGTGCAT
CTCTAACACAAGTGGCCTTCTGGACATCCTATGCTTTTTTACCTGCAGAG
CTGAGTGGAAGCATGGGATACTGGGGGATCTTTGGCTCGGGCGCCTTTGT
TTTGATAGCGCGTCATTTTGCGATGgtacgtgaaattgacatgtgtatgt
atgtatatgtgtattggttggaaggatgaaggagaagtgggtttacttca
gcatgcgtttgtacagcacatgtgtggtggccctgcgttgagcagaagga
caagtggaaggagtccttgtcctgtagatgagtcggccgcgccatgcaag
cttcaccccaaaatgatactctcactctcttcttcctctccacagCATTA
TGTGTGGGAGATGGACCAAATATCACCCGTCGCCTTCAGAATTTGCACAC
ACACTTTTTGGGGCAATAAGGGTCCCGAGCGCATCGTGCAAATAGGGACA
ACCAAGTGTCAACATACATCGCGgtaatatatatatatatatatatatat
atatatatatcaatcagacatgctcgcctaaacctaaaacatgtagttga
ttccaatttctaggttcgatactatcctgtgcgcttcaagtacagagagg
tccacgcacccccccttacatctttccttcctctctccatcctcacttcc
aacagCTACATTGCCGCCAAGGTCAAAGGCGACTCCTTTTACTATCTGCT
CGACATCAAGGAAGGAAAATTTGCCACCAATGAGTCTGAAGAGCAGATAC
TCCGGATTTTCCACGGGCTTCGGACGGACGTGCATGGCCGAAGTGGGGAG
GACGACGGAGAGGACGAGGGAGGGAATGGGACGGGGGGAGGCCGGCGGAA
AAGTGGAGGGCGGCGGTGGAAGGGCGGGTGGAAAGGGAAAACTTAA
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protein sequence of NO05G03990.1

>NO05G03990.1-protein ID=NO05G03990.1-protein|Name=NO05G03990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MMMRRGVLQSGKGLVVQCGLGARRGLQYCSSCGSSRALLMPSLPSSFHAS
SRQHRHTMPMAAWFQRYYGGKARALSSSASDTSTTAQGKEKRMDKVASES
KEEEPATTPELPTPLFSSPAPRFFRLLAGASLTQVAFWTSYAFLPAELSG
SMGYWGIFGSGAFVLIARHFAMHYVWEMDQISPVAFRICTHTFWGNKGPE
RIVQIGTTKCQHTSRYIAAKVKGDSFYYLLDIKEGKFATNESEEQILRIF
HGLRTDVHGRSGEDDGEDEGGNGTGGGRRKSGGRRWKGGWKGKT*
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Synonyms
Publications