NO05G03740, NO05G03740 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G03740 vs. NCBI_GenBank
Match: EWM28023.1 (tnf receptor-associated factor 4 [Nannochloropsis gaditana]) HSP 1 Score: 547.0 bits (1408), Expect = 1.300e-151 Identity = 339/709 (47.81%), Postives = 426/709 (60.08%), Query Frame = 0 Query: 389 DIWVCPVCLQNFDEPCRLPSCAHVFCKTCIQGIVRNILTAXXXXXXXXXXXVPQLAQHCHCPLCRSEFVPSEVRRHDALLLEMAVARIRCPNVRCGTVLSPLESKRHQDECLYSNVQCPHQPHGCSFRTARKDLRAHLTICPYEQIKGLYPKIRQSNEHVTAAMRGWENAFLSQQQMLASHTASIRMLDRRSPSNPLHHLQLLALFFWKPFLWLPQLDRWTRTGFSPRLTVMAMYLAPLLLVLLKVSARGSPDYSSAERGREEGWYLFYLPAAGYPAPIIGIDCFP-PPKMADYSSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQRHQQVEVVCAGGVSPEWTWLFFILVVFIAVFEMQDEAHWVFRKEDRIRL--------WPSPPLLSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPLSFPTELPISLYYGEYLLQVAAAWGCYSLGGGYSHPSSLLSLPPFLRGSALVRYGSLFLSLIPATALQMVAPRCKLEKPVVQGIVLGLCMYLVEWRALAASIILESFLNRAFFYICGSVIL--EALAEGRTR---LMKRYTDRPGAKLRGVGFLCLALGMLSIGRSWELMKGIAFRTVGTSIAYIFRVALARFMEKAQNMPRPPVNAATARVLESQLDRPFPGKYLLTTTRMLLVSSVLGMTLLAFY 1084 D WVCPVCLQ+FDEPCRLP C H FCKTCIQGI+RN++ XXXXXXXXXX P HCPLCR +F P+EV+ AL EM+ AR+RC N RC +++PLESKRHQDEC Y CPHQ HGC F+T R+DL AHL++CPYEQIKGL+PKIRQSNEHVTAAMRGWENAF+SQQQ LA+H AS+R L+ RS HLQL+ L W+P+LWL Q +RW+R+ FS RL M +Y +PL+L+LLKV+AR SPD W F+ PA YPAPI+G +C P P + SSS G Q VC+ G++PE W ILVV + + E +A V E I L +P P S+ XXXXXXXXXXXXXXXXXXXX F P L + + YGE+LLQ+A AW CY+ GGG + + P+L VRY +LFLSLIPA A+Q + RCKLEKP+VQG+V+G+CMY VEWRALA S++LE FL+ Y CG +L A EG R ++R + PGA+ RG+ L LA ML +G+SW L+KGI FRT GT ++++FR+ L RFM++ MPRPP +A R+L+ Q P PG Y+L +R LL SV+G+ L++ Y Sbjct: 377 DAWVCPVCLQHFDEPCRLPRCTHTFCKTCIQGIIRNLVAXXXXXXXXXXXSPPA----PHCPLCRLKFTPAEVQPDQALSQEMSAARVRCGNARCERLMTPLESKRHQDECPYGVAPCPHQHHGCGFQTLRRDLGAHLSMCPYEQIKGLFPKIRQSNEHVTAAMRGWENAFVSQQQTLATHAASLRNLEHRSSFPLSRHLQLVTLLLWEPYLWLQQAERWSRS-FSLRLFAMQLYASPLVLILLKVAARSSPDMPREPGHESRRW--FFPPATHYPAPIVGANCCPSSPCLGPPSSS----------------------------ASSLSFLTPWPAESAKEGDGQPQ---VCSLGMAPELAWFVLILVVAVVLVEGLQDAPPVLSTELCIPLRPASWRAFFPGLPFPSNRRRTSSYDPSSPAPXXXXXXXXXXXXXXXXXXXXTHTGTPPASTGPHSSPF---IPLVLSVPIRYGEWLLQLATAWACYAFGGGRARADFSDASFPYLSSFISVRYIALFLSLIPAMAVQTLTHRCKLEKPIVQGMVMGVCMYWVEWRALAGSLLLEEFLHYGLIYACGQWLLVDSAEREGSVRWDAYVRRCIEEPGARFRGILLLTLATIMLLVGQSWALVKGIFFRTTGTMVSFMFRMILGRFMKQTYQMPRPPATSAAVRLLQEQGQWPPPGHYMLLASRTLLALSVMGIALVSLY 1044
BLAST of NO05G03740 vs. NCBI_GenBank
Match: XP_005856307.1 (tnf receptor-associated factor 4, partial [Nannochloropsis gaditana CCMP526] >EKU20048.1 tnf receptor-associated factor 4, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 354.4 bits (908), Expect = 1.300e-93 Identity = 199/396 (50.25%), Postives = 242/396 (61.11%), Query Frame = 0 Query: 389 DIWVCPVCLQNFDEPCRLPSCAHVFCKTCIQGIVRNILTAXXXXXXXXXXXVPQLAQHCHCPLCRSEFVPSEVRRHDALLLEMAVARIRCPNVRCGTVLSPLESKRHQDECLYSNVQCPHQPHGCSFRTARKDLRAHLTICPYEQIKGLYPKIRQSNEHVTAAMRGWENAFLSQQQMLASHTASIRMLDRRSPSNPLHHLQLLALFFWKPFLWLPQLDRWTRTGFSPRLTVMAMYLAPLLLVLLKVSARGSPDYSSAERGREEGWYLFYLPAAGYPAPIIGIDCFP-PPKMADYSSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQRHQQVEVVCAGGVSPEWTWLFFILVVFIAVFEMQDEAHWVFRKEDRIRLWPS 784 D WVCPVCLQ+FDEPCRLP C H FCKTCIQGI+RN++ XXXXXXXXXX P HCPLCR +F P+EV+ AL EM+ AR+RC N RC +++PLESKRHQDEC Y CPHQ HGC F+T R+DL AHL++CPYEQIKGL+PKIRQSNEHVTAAMRGWENAF+SQQQ LA+H AS+R L+ RS HLQL+ L W+P+LWL Q +RW+R+ FS RL M +Y +PL+L+LLKV+AR SPD W F+ PA YPAPI+G +C P P + SSS G Q VC+ G++PE W ILVV + + E +A V E I L P+ Sbjct: 384 DAWVCPVCLQHFDEPCRLPRCTHTFCKTCIQGIIRNLVAXXXXXXXXXXXSPPA----PHCPLCRLKFTPAEVQPDQALSQEMSAARVRCGNARCERLMTPLESKRHQDECPYGVAPCPHQHHGCGFQTLRRDLGAHLSMCPYEQIKGLFPKIRQSNEHVTAAMRGWENAFVSQQQTLATHAASLRNLEHRSSFPLSRHLQLVTLLLWEPYLWLQQAERWSRS-FSLRLFAMQLYASPLVLILLKVAARSSPDMPREPGHESRRW--FFPPATHYPAPIVGANCCPSSPCLGPPSSS----------------------------ASSLSFLTPWPAESAKEGDGQPQ---VCSLGMAPELAWFVLILVVAVVLVEGLQDAPPVLSTELCIPLRPA 741
BLAST of NO05G03740 vs. NCBI_GenBank
Match: CBN77336.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 99.8 bits (247), Expect = 5.700e-17 Identity = 53/154 (34.42%), Postives = 70/154 (45.45%), Query Frame = 0 Query: 391 WVCPVCLQNFDEPCRLPSCAHVFCKTCIQGIVRNILTAXXXXXXXXXXXVPQLAQHCHCPLCRSEFVPSEVRRHDALLLEMAVARIRCPNVRCGTVLSPLESKRHQDECLYSNVQCPHQPHGCSFRTARKDLRAHLTICPYEQIKGLYPKIRQS 545 W CP+C FD P P C H FC C++ +VR X R F P V+ + EM A + C N C PL K+HQ+EC + VQC H GC ++ AR+DL H+ C YE+IKGL P++ S Sbjct: 29 WSCPICFMWFDMPVS-PPCQHTFCAGCLKSVVR-------AAAHRQRRXXXXXXXXXXXXXXREPFTPEVVQPSARIFEEMLKATVTCRNGDCAAQFCPLRWKKHQEECPSAVVQCMHHLVGCEWKGARRDLSLHVEGCAYEKIKGLIPRVSAS 174
BLAST of NO05G03740 vs. NCBI_GenBank
Match: GAQ91521.1 (hypothetical protein KFL_008000020 [Klebsormidium nitens]) HSP 1 Score: 91.7 bits (226), Expect = 1.500e-14 Identity = 79/262 (30.15%), Postives = 113/262 (43.13%), Query Frame = 0 Query: 387 PIDIWVCPVCLQNFDEPCRLPSCAHVFCKTCIQGIVRNILTAXXXXXXXXXXXVPQLAQHC----HCPLCRSEF-VPSEVRRHDALLLEMAVARIRCPNVRC--GTVLSPLESKRHQDECLYSNVQCPHQPHGCSFRTARKDLRAHLTICPYEQIKGLYPKIRQSNEHVTAAMRGWENAFLSQQQMLASHTASIRMLDRRSPSNPLHHLQLLALFFWKPFLWLPQLDRWTRTGFSPRLTVMAMYLAPLLLVLLKVSARGSPD 642 P D WVCP+CL+ ++P P C H FC+TCI T P +A CP+CR++ V + L E+ A ++C NV C G V + E K+HQ C Y+ V C QP GC +R R L AH C Y+++ IR +NE V A L Q L A ++ L R + + + + L F +P L+ + W R F+ ++ P+ LLK SPD Sbjct: 16 PKDHWVCPLCLEIMEDPHSTP-CRHSFCRTCI--------TLAFAHETHRQMHSPHVATPIPPPKTCPICRADCGSEGGVTPNGGLAAELRGALVKCGNVGCEEGAVRAS-EWKQHQGVCAYAEVSCSQQPLGCHWRGVRHQLGAHELRCAYKELSAF---IRGTNEKV--AQLAHTVTHLEHQVRL--QNALLQDLRRLHHYSLQDYFKFVYLIFCRPDLYETSRELW-RHSFNVSWFQAVCFMLPIF--LLKFRLLFSPD 257 The following BLAST results are available for this feature:
BLAST of NO05G03740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 4
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G03740 ID=NO05G03740|Name=NO05G03740|organism=Nannochloropsis oceanica|type=gene|length=3421bpback to top protein sequence of NO05G03740.1 >NO05G03740.1-protein ID=NO05G03740.1-protein|Name=NO05G03740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1084bpback to top Synonyms
Publications
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