NO05G03290, NO05G03290 (gene) Nannochloropsis oceanica

Overview
NameNO05G03290
Unique NameNO05G03290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2169
Alignment locationchr5:854194..856362 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:854194..856362 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G03290 vs. NCBI_GenBank
Match: EWM28064.1 (hypothetical protein Naga_100044g33 [Nannochloropsis gaditana])

HSP 1 Score: 66.2 bits (160), Expect = 4.600e-7
Identity = 50/116 (43.10%), Postives = 62/116 (53.45%), Query Frame = 0 
Query:   97 EADMSLVASLALWEVIRELGQRQVNFTVLQPREELNELLLEARQGKSVGAHSGISGNNSTAATTNRSSLPTPLVLGKEVKVEEDASLHDLEKEGEVTENK--------SASVFPPS 205
            EA+ S  ASL LWEVIRELGQRQV+F VLQPREEL+ LL +AR GK       ++  +   A+T  +S   PL  G   + EE  +L    K    T  +        S S  PPS
Sbjct:   96 EAETSSEASLPLWEVIRELGQRQVDFNVLQPREELDALLYQARLGK-------VNTKSERVASTGTASSSRPLP-GATERKEEAVALASQAKNVSQTPPRGDLEARLPSVSFAPPS 203
The following BLAST results are available for this feature:
BLAST of NO05G03290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28064.14.600e-743.10hypothetical protein Naga_100044g33 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003536NSK003536Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03290.1NO05G03290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584692gene_3137Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100044g33gene2492Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03290.1NO05G03290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03290 ID=NO05G03290|Name=NO05G03290|organism=Nannochloropsis oceanica|type=gene|length=2169bp
ATGAGAATACCTCGTCAGCGACATGGTGTCCTGCTCTTAGTTCTGTGCCT
GTACCGGGGCCTGCCGCTATTTTCCGCCTTCCATAACACTCTCCTCTCTC
GTCGGCTCGCCCAGCGGCTAGCTTTATCATCCTCCTCTTCGCAATCACAC
CCCTTGCATTCGTCAAGCAGCACCGTTGCCGTGCAACGTGCGAGCGAACC
ATCCAAGTCAACAGAAAAGGGGAAGCCATTGCCGGTGTCGCCTGTGCCTC
TAATACCAGAGATTCCAACAAAAACAGCCCCTTCAAAAGAAGCAGACATG
TCATTGGTGGCCTCGTTAGCCTTGTGGGAAGTGATCCGAGAGCTGGGACA
GCGCCAGGTCAATTTTACCGTCTTGCAGCCACGCGAAGAGCTCAACGAGC
TACTTCTTGAAGCTCGGCAAGGGAAAAGTGTCGGTGCCCACAGCGGCATT
AGCGGCAATAACAGCACTGCTGCGACGACCAACAGGAGTTCACTTCCCAC
CCCTCTCGTACTTGGAAAAGAGGTTAAGGTAGAGGAGGACGCAAGCTTGC
ACGATCTAGAAAAGGAAGGAGAGGTAACAGAGAATAAAAGTGCATCTGTC
TTTCCTCCTTCCTCCGTTCTCCCCTTGACTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTACTTCCTCCTCCTCCTCCCCTTCCTCCTCTTCTTCTTCT
CCACCTCCTCTTCTTTCTCCCCTCGCCGCAGTTCCCAAACCTAAAGCCTC
CTCCCCCAAACCGTTTTCGGAGACACCAGTACCACCACCATCACCACCAC
CACCACCACCACCACCAACAACAACAACAACTCCAAGCGAACGTGAGAGC
CGATCCCTTCCCCCTCCTGCTCTAGCAGCAGCAACTGTACCTGTCTTCAC
CTCCATTGCGGATGCTCTGGCATGGGCGTGCACGTTATCCGCAGAAGAAA
TATTGGTCGAGTTGGATTTTCTGCATATCGAGGAAGGGGCAGAGGGAGGG
AGGGAGGGGTTGAGGCATGCGGAGCTGGCTAGGCTGTTGGCGAGAGCGGT
ATTGGTGGAGAGAGCGAGTGGGGGAGGGAAGGAGGAAGGGATGCCAGGCA
AGGCAACGCTACCGATAGCGATGACGGGCAGCAGTGTTGCTGCTGATGCT
GGAGCTTCACAAAAAACGAAGGGGGTTGTACGTCCTCTTCCCTCTCTTGT
GGCAAATGCCAAGTCCAAGGCGCGGCAACGGCGTCTGCTGGAGCAGCAGC
AGCAGCAGCAGCACCTGCATGGAGACGGGGCAGGAAAAGTGGGAGTTACA
GAGGACGAAGAGGGGGGAATTAGGGGGGGAGGGAGGGAGGGCCACGTGCT
TGACCTAGAGCACGCCCAAGAGGAGTTAGCAGCCCTTCGACGCCGAGCAT
TGGAGACTGCCGCATCCTTAGATAGCACAGGCAGCAGCAGCAGCAGCACG
AAAGGTGCCACGCGAGGTCGAATTCCTTCTTCATCTTCCTCTTCCGCCTC
CTTCCCCTCCTCCTCCTCTAGCAGCCGTCGACCTCCTCATATCAGCAAGA
AGACCAACAAAGGCAACAAATACAGCTCTCGCGGTGCATCTCTGTTTAAC
GACGCCTACGACCAAGTCAAATTCTCAGAAGGCGGGGACCTCGCCCTCCG
GGTATTTGAAAAGATGAATCGAGGCACAGATAAAGCCCGTTATTGGGCTA
CTTATGCAAAGGGCATGGCCCGCGACGCCATTATCGCTGCCTCTCTCAAC
GAACAAGACGCTGATCGCCGCACCCATCAAAAGAAGAGCGGGAAAACAAG
TGCATTGCAGCAGAAATCGAGGAAGTTGTTAGGGCCGCGAGGGAGAGGGT
GGTCGAAGCTGATGGGGCATGTGACGCGGGCATGGGCGGAGAGTGCGTGG
CAAGTGGTCATGGCCTTGGCGAGCTGGGCGGGAGGAGGTCTACTGCCGGG
GCGATACGTTCTGTTGGGCGCAGGGGTGTTCGCAATGCTATTGAGGCAGG
GAGTTGGGACGTTTTTCGCGGCCTTGTTGGTAGTGCGGACGTGCTCGAGT
ACGTTGAGGAATATGATTGAGGATGATGAGGATGAAGGGATGGAGGGAGC
GATGGGGGTAGGGTTTTGA
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protein sequence of NO05G03290.1

>NO05G03290.1-protein ID=NO05G03290.1-protein|Name=NO05G03290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=723bp
MRIPRQRHGVLLLVLCLYRGLPLFSAFHNTLLSRRLAQRLALSSSSSQSH
PLHSSSSTVAVQRASEPSKSTEKGKPLPVSPVPLIPEIPTKTAPSKEADM
SLVASLALWEVIRELGQRQVNFTVLQPREELNELLLEARQGKSVGAHSGI
SGNNSTAATTNRSSLPTPLVLGKEVKVEEDASLHDLEKEGEVTENKSASV
FPPSSVLPLTAAAAAAAAAAAPPPPPSSSSSSSSSSSTSSSSSPSSSSSS
PPPLLSPLAAVPKPKASSPKPFSETPVPPPSPPPPPPPPTTTTTPSERES
RSLPPPALAAATVPVFTSIADALAWACTLSAEEILVELDFLHIEEGAEGG
REGLRHAELARLLARAVLVERASGGGKEEGMPGKATLPIAMTGSSVAADA
GASQKTKGVVRPLPSLVANAKSKARQRRLLEQQQQQQHLHGDGAGKVGVT
EDEEGGIRGGGREGHVLDLEHAQEELAALRRRALETAASLDSTGSSSSST
KGATRGRIPSSSSSSASFPSSSSSSRRPPHISKKTNKGNKYSSRGASLFN
DAYDQVKFSEGGDLALRVFEKMNRGTDKARYWATYAKGMARDAIIAASLN
EQDADRRTHQKKSGKTSALQQKSRKLLGPRGRGWSKLMGHVTRAWAESAW
QVVMALASWAGGGLLPGRYVLLGAGVFAMLLRQGVGTFFAALLVVRTCSS
TLRNMIEDDEDEGMEGAMGVGF*
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Synonyms
Publications