NO05G03290.1, NO05G03290.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G03290.1
Unique Name	NO05G03290.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2169
Alignment location	chr5:854194..856362 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:854194..856362 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO05G03290.1 vs.
Match: EWM28064.1 (hypothetical protein Naga_100044g33 [Nannochloropsis gaditana])

HSP 1 Score: 66.2 bits (160), Expect = 4.600e-7
Identity = 58/149 (38.93%), Postives = 80/149 (53.69%), Query Frame = 0

Query:   97 EADMSLVASLALWEVIRELGQRQVNFTVLQPREELNELLLEARQGKSVGAHSGISGNNSTAATTNRSSLPTPLVLGKEVKVEEDA------SLHDLEKEGEVTENKSASVFPPSSVLPLTAAAAAAAAAAA-------PPPPPSSSSSS 233
            EA+ S  ASL LWEVIRELGQRQV+F VLQPREEL+ LL +AR GK       ++  +   A+T  +S   PL    E K E  A      ++      G++     +  F P S+ PL   +A+ A  A+       PPPPPS ++++
Sbjct:   96 EAETSSEASLPLWEVIRELGQRQVDFNVLQPREELDALLYQARLGK-------VNTKSERVASTGTASSSRPLPGATERKEEAVALASQAKNVSQTPPRGDLEARLPSVSFAPPSLAPLPVLSASEAGTASTGPLTRRPPPPPSVAAAA 237

The following BLAST results are available for this feature:

BLAST of NO05G03290.1 vs.

BLAST of NO05G03290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28064.1	4.600e-7	38.93	hypothetical protein Naga_100044g33 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G03290	NO05G03290	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G03290.1	NO05G03290.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G03290.1.cds1	NO05G03290.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:854194..856362+
coding sequence from alignment at chr5:854194..856362+

mRNA sequence

>NO05G03290.1 ID=NO05G03290.1|Name=NO05G03290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2169bp
ATGAGAATACCTCGTCAGCGACATGGTGTCCTGCTCTTAGTTCTGTGCCT
GTACCGGGGCCTGCCGCTATTTTCCGCCTTCCATAACACTCTCCTCTCTC
GTCGGCTCGCCCAGCGGCTAGCTTTATCATCCTCCTCTTCGCAATCACAC
CCCTTGCATTCGTCAAGCAGCACCGTTGCCGTGCAACGTGCGAGCGAACC
ATCCAAGTCAACAGAAAAGGGGAAGCCATTGCCGGTGTCGCCTGTGCCTC
TAATACCAGAGATTCCAACAAAAACAGCCCCTTCAAAAGAAGCAGACATG
TCATTGGTGGCCTCGTTAGCCTTGTGGGAAGTGATCCGAGAGCTGGGACA
GCGCCAGGTCAATTTTACCGTCTTGCAGCCACGCGAAGAGCTCAACGAGC
TACTTCTTGAAGCTCGGCAAGGGAAAAGTGTCGGTGCCCACAGCGGCATT
AGCGGCAATAACAGCACTGCTGCGACGACCAACAGGAGTTCACTTCCCAC
CCCTCTCGTACTTGGAAAAGAGGTTAAGGTAGAGGAGGACGCAAGCTTGC
ACGATCTAGAAAAGGAAGGAGAGGTAACAGAGAATAAAAGTGCATCTGTC
TTTCCTCCTTCCTCCGTTCTCCCCTTGACTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTACTTCCTCCTCCTCCTCCCCTTCCTCCTCTTCTTCTTCT
CCACCTCCTCTTCTTTCTCCCCTCGCCGCAGTTCCCAAACCTAAAGCCTC
CTCCCCCAAACCGTTTTCGGAGACACCAGTACCACCACCATCACCACCAC
CACCACCACCACCACCAACAACAACAACAACTCCAAGCGAACGTGAGAGC
CGATCCCTTCCCCCTCCTGCTCTAGCAGCAGCAACTGTACCTGTCTTCAC
CTCCATTGCGGATGCTCTGGCATGGGCGTGCACGTTATCCGCAGAAGAAA
TATTGGTCGAGTTGGATTTTCTGCATATCGAGGAAGGGGCAGAGGGAGGG
AGGGAGGGGTTGAGGCATGCGGAGCTGGCTAGGCTGTTGGCGAGAGCGGT
ATTGGTGGAGAGAGCGAGTGGGGGAGGGAAGGAGGAAGGGATGCCAGGCA
AGGCAACGCTACCGATAGCGATGACGGGCAGCAGTGTTGCTGCTGATGCT
GGAGCTTCACAAAAAACGAAGGGGGTTGTACGTCCTCTTCCCTCTCTTGT
GGCAAATGCCAAGTCCAAGGCGCGGCAACGGCGTCTGCTGGAGCAGCAGC
AGCAGCAGCAGCACCTGCATGGAGACGGGGCAGGAAAAGTGGGAGTTACA
GAGGACGAAGAGGGGGGAATTAGGGGGGGAGGGAGGGAGGGCCACGTGCT
TGACCTAGAGCACGCCCAAGAGGAGTTAGCAGCCCTTCGACGCCGAGCAT
TGGAGACTGCCGCATCCTTAGATAGCACAGGCAGCAGCAGCAGCAGCACG
AAAGGTGCCACGCGAGGTCGAATTCCTTCTTCATCTTCCTCTTCCGCCTC
CTTCCCCTCCTCCTCCTCTAGCAGCCGTCGACCTCCTCATATCAGCAAGA
AGACCAACAAAGGCAACAAATACAGCTCTCGCGGTGCATCTCTGTTTAAC
GACGCCTACGACCAAGTCAAATTCTCAGAAGGCGGGGACCTCGCCCTCCG
GGTATTTGAAAAGATGAATCGAGGCACAGATAAAGCCCGTTATTGGGCTA
CTTATGCAAAGGGCATGGCCCGCGACGCCATTATCGCTGCCTCTCTCAAC
GAACAAGACGCTGATCGCCGCACCCATCAAAAGAAGAGCGGGAAAACAAG
TGCATTGCAGCAGAAATCGAGGAAGTTGTTAGGGCCGCGAGGGAGAGGGT
GGTCGAAGCTGATGGGGCATGTGACGCGGGCATGGGCGGAGAGTGCGTGG
CAAGTGGTCATGGCCTTGGCGAGCTGGGCGGGAGGAGGTCTACTGCCGGG
GCGATACGTTCTGTTGGGCGCAGGGGTGTTCGCAATGCTATTGAGGCAGG
GAGTTGGGACGTTTTTCGCGGCCTTGTTGGTAGTGCGGACGTGCTCGAGT
ACGTTGAGGAATATGATTGAGGATGATGAGGATGAAGGGATGGAGGGAGC
GATGGGGGTAGGGTTTTGA

protein sequence of NO05G03290.1

>NO05G03290.1-protein ID=NO05G03290.1-protein|Name=NO05G03290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=723bp
MRIPRQRHGVLLLVLCLYRGLPLFSAFHNTLLSRRLAQRLALSSSSSQSH
PLHSSSSTVAVQRASEPSKSTEKGKPLPVSPVPLIPEIPTKTAPSKEADM
SLVASLALWEVIRELGQRQVNFTVLQPREELNELLLEARQGKSVGAHSGI
SGNNSTAATTNRSSLPTPLVLGKEVKVEEDASLHDLEKEGEVTENKSASV
FPPSSVLPLTAAAAAAAAAAAPPPPPSSSSSSSSSSSTSSSSSPSSSSSS
PPPLLSPLAAVPKPKASSPKPFSETPVPPPSPPPPPPPPTTTTTPSERES
RSLPPPALAAATVPVFTSIADALAWACTLSAEEILVELDFLHIEEGAEGG
REGLRHAELARLLARAVLVERASGGGKEEGMPGKATLPIAMTGSSVAADA
GASQKTKGVVRPLPSLVANAKSKARQRRLLEQQQQQQHLHGDGAGKVGVT
EDEEGGIRGGGREGHVLDLEHAQEELAALRRRALETAASLDSTGSSSSST
KGATRGRIPSSSSSSASFPSSSSSSRRPPHISKKTNKGNKYSSRGASLFN
DAYDQVKFSEGGDLALRVFEKMNRGTDKARYWATYAKGMARDAIIAASLN
EQDADRRTHQKKSGKTSALQQKSRKLLGPRGRGWSKLMGHVTRAWAESAW
QVVMALASWAGGGLLPGRYVLLGAGVFAMLLRQGVGTFFAALLVVRTCSS
TLRNMIEDDEDEGMEGAMGVGF*

mRNA from alignment at chr5:854194..856362+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G03290.1 ID=NO05G03290.1|Name=NO05G03290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2169bp|location=Sequence derived from alignment at chr5:854194..856362+ (Nannochloropsis oceanica)
ATGAGAATACCTCGTCAGCGACATGGTGTCCTGCTCTTAGTTCTGTGCCT
GTACCGGGGCCTGCCGCTATTTTCCGCCTTCCATAACACTCTCCTCTCTC
GTCGGCTCGCCCAGCGGCTAGCTTTATCATCCTCCTCTTCGCAATCACAC
CCCTTGCATTCGTCAAGCAGCACCGTTGCCGTGCAACGTGCGAGCGAACC
ATCCAAGTCAACAGAAAAGGGGAAGCCATTGCCGGTGTCGCCTGTGCCTC
TAATACCAGAGATTCCAACAAAAACAGCCCCTTCAAAAGAAGCAGACATG
TCATTGGTGGCCTCGTTAGCCTTGTGGGAAGTGATCCGAGAGCTGGGACA
GCGCCAGGTCAATTTTACCGTCTTGCAGCCACGCGAAGAGCTCAACGAGC
TACTTCTTGAAGCTCGGCAAGGGAAAAGTGTCGGTGCCCACAGCGGCATT
AGCGGCAATAACAGCACTGCTGCGACGACCAACAGGAGTTCACTTCCCAC
CCCTCTCGTACTTGGAAAAGAGGTTAAGGTAGAGGAGGACGCAAGCTTGC
ACGATCTAGAAAAGGAAGGAGAGGTAACAGAGAATAAAAGTGCATCTGTC
TTTCCTCCTTCCTCCGTTCTCCCCTTGACTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTACTTCCTCCTCCTCCTCCCCTTCCTCCTCTTCTTCTTCT
CCACCTCCTCTTCTTTCTCCCCTCGCCGCAGTTCCCAAACCTAAAGCCTC
CTCCCCCAAACCGTTTTCGGAGACACCAGTACCACCACCATCACCACCAC
CACCACCACCACCACCAACAACAACAACAACTCCAAGCGAACGTGAGAGC
CGATCCCTTCCCCCTCCTGCTCTAGCAGCAGCAACTGTACCTGTCTTCAC
CTCCATTGCGGATGCTCTGGCATGGGCGTGCACGTTATCCGCAGAAGAAA
TATTGGTCGAGTTGGATTTTCTGCATATCGAGGAAGGGGCAGAGGGAGGG
AGGGAGGGGTTGAGGCATGCGGAGCTGGCTAGGCTGTTGGCGAGAGCGGT
ATTGGTGGAGAGAGCGAGTGGGGGAGGGAAGGAGGAAGGGATGCCAGGCA
AGGCAACGCTACCGATAGCGATGACGGGCAGCAGTGTTGCTGCTGATGCT
GGAGCTTCACAAAAAACGAAGGGGGTTGTACGTCCTCTTCCCTCTCTTGT
GGCAAATGCCAAGTCCAAGGCGCGGCAACGGCGTCTGCTGGAGCAGCAGC
AGCAGCAGCAGCACCTGCATGGAGACGGGGCAGGAAAAGTGGGAGTTACA
GAGGACGAAGAGGGGGGAATTAGGGGGGGAGGGAGGGAGGGCCACGTGCT
TGACCTAGAGCACGCCCAAGAGGAGTTAGCAGCCCTTCGACGCCGAGCAT
TGGAGACTGCCGCATCCTTAGATAGCACAGGCAGCAGCAGCAGCAGCACG
AAAGGTGCCACGCGAGGTCGAATTCCTTCTTCATCTTCCTCTTCCGCCTC
CTTCCCCTCCTCCTCCTCTAGCAGCCGTCGACCTCCTCATATCAGCAAGA
AGACCAACAAAGGCAACAAATACAGCTCTCGCGGTGCATCTCTGTTTAAC
GACGCCTACGACCAAGTCAAATTCTCAGAAGGCGGGGACCTCGCCCTCCG
GGTATTTGAAAAGATGAATCGAGGCACAGATAAAGCCCGTTATTGGGCTA
CTTATGCAAAGGGCATGGCCCGCGACGCCATTATCGCTGCCTCTCTCAAC
GAACAAGACGCTGATCGCCGCACCCATCAAAAGAAGAGCGGGAAAACAAG
TGCATTGCAGCAGAAATCGAGGAAGTTGTTAGGGCCGCGAGGGAGAGGGT
GGTCGAAGCTGATGGGGCATGTGACGCGGGCATGGGCGGAGAGTGCGTGG
CAAGTGGTCATGGCCTTGGCGAGCTGGGCGGGAGGAGGTCTACTGCCGGG
GCGATACGTTCTGTTGGGCGCAGGGGTGTTCGCAATGCTATTGAGGCAGG
GAGTTGGGACGTTTTTCGCGGCCTTGTTGGTAGTGCGGACGTGCTCGAGT
ACGTTGAGGAATATGATTGAGGATGATGAGGATGAAGGGATGGAGGGAGC
GATGGGGGTAGGGTTTTGA

Coding sequence (CDS) from alignment at chr5:854194..856362+

>NO05G03290.1 ID=NO05G03290.1|Name=NO05G03290.1|organism=Nannochloropsis oceanica|type=CDS|length=2169bp|location=Sequence derived from alignment at chr5:854194..856362+ (Nannochloropsis oceanica)
ATGAGAATACCTCGTCAGCGACATGGTGTCCTGCTCTTAGTTCTGTGCCT
GTACCGGGGCCTGCCGCTATTTTCCGCCTTCCATAACACTCTCCTCTCTC
GTCGGCTCGCCCAGCGGCTAGCTTTATCATCCTCCTCTTCGCAATCACAC
CCCTTGCATTCGTCAAGCAGCACCGTTGCCGTGCAACGTGCGAGCGAACC
ATCCAAGTCAACAGAAAAGGGGAAGCCATTGCCGGTGTCGCCTGTGCCTC
TAATACCAGAGATTCCAACAAAAACAGCCCCTTCAAAAGAAGCAGACATG
TCATTGGTGGCCTCGTTAGCCTTGTGGGAAGTGATCCGAGAGCTGGGACA
GCGCCAGGTCAATTTTACCGTCTTGCAGCCACGCGAAGAGCTCAACGAGC
TACTTCTTGAAGCTCGGCAAGGGAAAAGTGTCGGTGCCCACAGCGGCATT
AGCGGCAATAACAGCACTGCTGCGACGACCAACAGGAGTTCACTTCCCAC
CCCTCTCGTACTTGGAAAAGAGGTTAAGGTAGAGGAGGACGCAAGCTTGC
ACGATCTAGAAAAGGAAGGAGAGGTAACAGAGAATAAAAGTGCATCTGTC
TTTCCTCCTTCCTCCGTTCTCCCCTTGACTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTACTTCCTCCTCCTCCTCCCCTTCCTCCTCTTCTTCTTCT
CCACCTCCTCTTCTTTCTCCCCTCGCCGCAGTTCCCAAACCTAAAGCCTC
CTCCCCCAAACCGTTTTCGGAGACACCAGTACCACCACCATCACCACCAC
CACCACCACCACCACCAACAACAACAACAACTCCAAGCGAACGTGAGAGC
CGATCCCTTCCCCCTCCTGCTCTAGCAGCAGCAACTGTACCTGTCTTCAC
CTCCATTGCGGATGCTCTGGCATGGGCGTGCACGTTATCCGCAGAAGAAA
TATTGGTCGAGTTGGATTTTCTGCATATCGAGGAAGGGGCAGAGGGAGGG
AGGGAGGGGTTGAGGCATGCGGAGCTGGCTAGGCTGTTGGCGAGAGCGGT
ATTGGTGGAGAGAGCGAGTGGGGGAGGGAAGGAGGAAGGGATGCCAGGCA
AGGCAACGCTACCGATAGCGATGACGGGCAGCAGTGTTGCTGCTGATGCT
GGAGCTTCACAAAAAACGAAGGGGGTTGTACGTCCTCTTCCCTCTCTTGT
GGCAAATGCCAAGTCCAAGGCGCGGCAACGGCGTCTGCTGGAGCAGCAGC
AGCAGCAGCAGCACCTGCATGGAGACGGGGCAGGAAAAGTGGGAGTTACA
GAGGACGAAGAGGGGGGAATTAGGGGGGGAGGGAGGGAGGGCCACGTGCT
TGACCTAGAGCACGCCCAAGAGGAGTTAGCAGCCCTTCGACGCCGAGCAT
TGGAGACTGCCGCATCCTTAGATAGCACAGGCAGCAGCAGCAGCAGCACG
AAAGGTGCCACGCGAGGTCGAATTCCTTCTTCATCTTCCTCTTCCGCCTC
CTTCCCCTCCTCCTCCTCTAGCAGCCGTCGACCTCCTCATATCAGCAAGA
AGACCAACAAAGGCAACAAATACAGCTCTCGCGGTGCATCTCTGTTTAAC
GACGCCTACGACCAAGTCAAATTCTCAGAAGGCGGGGACCTCGCCCTCCG
GGTATTTGAAAAGATGAATCGAGGCACAGATAAAGCCCGTTATTGGGCTA
CTTATGCAAAGGGCATGGCCCGCGACGCCATTATCGCTGCCTCTCTCAAC
GAACAAGACGCTGATCGCCGCACCCATCAAAAGAAGAGCGGGAAAACAAG
TGCATTGCAGCAGAAATCGAGGAAGTTGTTAGGGCCGCGAGGGAGAGGGT
GGTCGAAGCTGATGGGGCATGTGACGCGGGCATGGGCGGAGAGTGCGTGG
CAAGTGGTCATGGCCTTGGCGAGCTGGGCGGGAGGAGGTCTACTGCCGGG
GCGATACGTTCTGTTGGGCGCAGGGGTGTTCGCAATGCTATTGAGGCAGG
GAGTTGGGACGTTTTTCGCGGCCTTGTTGGTAGTGCGGACGTGCTCGAGT
ACGTTGAGGAATATGATTGAGGATGATGAGGATGAAGGGATGGAGGGAGC
GATGGGGGTAGGGTTTTGA

Synonyms

Publications