NO05G02630, NO05G02630 (gene) Nannochloropsis oceanica

Overview
NameNO05G02630
Unique NameNO05G02630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1503
Alignment locationchr5:697968..699470 -

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Properties
Property NameValue
DescriptionGtp-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:697968..699470 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Homology
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BLAST of NO05G02630 vs. NCBI_GenBank
Match: EWM28105.1 (gtp-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 172.6 bits (436), Expect = 2.300e-39
Identity = 163/375 (43.47%), Postives = 213/375 (56.80%), Query Frame = 0 
Query:    1 MRIFSILLAAVTILAPVAVLGEIETNAVKDT--SVSDV-LHDEDLEGVAARKLEFLNLEVDQKGCYLLTGPESGLLLLLCEDDAGARKRYTDEGILV-----DLAESPEETNEDMYSWVNGTITNLGEIAICNVAFASRDTDLTTDALDVVPINLPTTALDESLFDSVDLAPGESIDFAYFLPFNAARNAPAFVGLSKSLHACSEAKEKFVPELPEWDEVETTGEAVDKLVDAANIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSKPPELADTTTTIPTKTQ---DKSVAEALEEPK-AANTNALKVKVAAKTDESNSSVTEIPIKEAQNEAETTSPAGTRSASGSIILLGTIFVLSVSAFF 364
            MR  S +LA  TILAP  V G+++ + + +T   VSDV L+    EG  A+ +E L L +D++GCY+L GPES L L LCEDD GAR+++T EG  +      L+ +  ET  + +SWVNGT+TN+GE+ IC VAFASRDT+L  +AL  +P+NLPTT +D    +S          FAY LPF+ +R+APAFVGL+ SL ACS A   FVP +    +  T  E +D     A+             XXXXXXXXXXXXXXXXXXXXXXXXXXX        ++   T+P  T    D + A A    K AA    ++V     TD +N   +  P +E   E   TSPAG  + S +I LL     LS  A F
Sbjct:  664 MRTLSKVLATTTILAPSLVFGDVQ-DTLHETRHPVSDVILNGNTKEGHQAKAVETLKLRIDERGCYVLAGPESKLSLSLCEDDVGARQQFTKEGTPIKTVNDGLSFAMSETPVETFSWVNGTVTNIGEVPICYVAFASRDTNLLAEALHTIPVNLPTTTVDVPPVESXXXXXXXXXXFAYLLPFDDSRDAPAFVGLANSLQACSHAVRTFVPVMSVMTKA-TDVEKIDDKGAGASASTTVIDKTQVKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRSEAKKTVPVATSTSVDANAASAGSMSKDAAKPAGVEVTKETGTD-TNRDASHSPTEE--EELVNTSPAGHVTTSANIFLLVLTATLSGMAVF 1033
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BLAST of NO05G02630 vs. NCBI_GenBank
Match: EWM28764.1 (hypothetical protein Naga_100002g166 [Nannochloropsis gaditana])

HSP 1 Score: 73.2 bits (178), Expect = 1.900e-9
Identity = 49/148 (33.11%), Postives = 69/148 (46.62%), Query Frame = 0 
Query:   56 EVDQKGCYLLTGPESGLLLLLCEDDAGARKRYTDEGILVDLAESPEETNEDMYSWVNGTITNLGEIAICNVAFASRDTDLTTDALDVVPINLPTTALDESLFDSVDLAPGESIDFAYFLPFNAARNAPAFVGLSKSLHAC---SEAKE 201
            +V Q GCY +    S + LL+CED   A     D           +E +   ++WV GT+TN G  AIC + FAS D  L   A++ VP  L              L P ESI++++ LP +A   A   VG+  +L  C    +AKE
Sbjct:   89 KVGQVGCYTIGDDVSKIALLMCEDKDSAATPVPD-----------KEKDGQAFAWVKGTLTNEGPEAICQLKFASNDLKLGMAAIETVPKELEN-------LTPFKLEPQESINYSFLLPIDAKEMAAPLVGIQDTLGPCKMIEKAKE 218
The following BLAST results are available for this feature:
BLAST of NO05G02630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM28105.12.300e-3943.47gtp-binding protein [Nannochloropsis gaditana][more]
EWM28764.11.900e-933.11hypothetical protein Naga_100002g166 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL083nonsL083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR121ngnoR121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003597NSK003597Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02630.1NO05G02630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669869gene_3066Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100036g37gene2436Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02630.1NO05G02630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02630 ID=NO05G02630|Name=NO05G02630|organism=Nannochloropsis oceanica|type=gene|length=1503bp
AACATACAGGGTGTCACACACACGCCCTTTACGAAGCCAATTAGCATGCG
TATTTTCTCCATACTCCTCGCCGCAGTCACGATTCTGGCCCCCGTCGCTG
TACTAGGTGAGATCGAGACGAATGCAGTGAAGGACACCTCTGTATCGGAC
GTCCTCCATGATGAGGACTTGGAAGGAGTCGCAGCGAGAAAGCTCGAGTT
TCTGAACCTAGAGGTTGATCAGAAGGGATGCTATCTCCTGACGGGTCCTG
AATCTGGATTGTTATTATTGCTTTGCGAGGACGATGCCGGGGCACGCAAG
CGTTATACCGATGAGGgtgagtgctagaagttgcgaatcttggtattgca
ccatgcacatcaaaagccctcttgagaggagaacgtgcaacgagttaaaa
agtatcccctcctgcatgaggttgcatacatgtactgtgatactcatgtc
atgctattcccatacgcacagGTATCCTTGTTGACTTAGCCGAATCCCCT
GAAGAAACGAACGAGGACATGTACTCTTGGGTCAATGGCACCATCACGAA
CCTTGGAGAAATTGCTATCTGTAATGTGGCGTTTGCTTCACGGGACACTG
ATCTTACCACAGATGCCCTTGACGTCGTGCCTATCAATCTTCCCACGACC
GCACTGGACGAATCGCTGTTTGATTCCGTGGACCTAGCCCCCGGGGAGTC
GATCGACTTTGCTTACTTTTTGCCTTTCAATGCCGCTCGCAACGCGCCAG
CCTTCGTAGGCTTATCCAAATCTCTTCATGCCTGCTCGGAAGCCAAGGAG
AAGTTCGTGCCCGAGCTGCCGGAGTGGGATGAAGTAGAGACTACTGGTGA
GGCAGTAGACAAGCTGGTTGATGCCGCAAACATTGTCGTTGATGCCACCC
AAGAGACGACCGGCGAGATGCTGGACACGACGCAGCAGTTCACACAGGGA
TTTGTGGACGGTACTCAGGATAAGCTTGATGCTACCATAGATTCCTTGCA
GGCCGTGTCGAAGCCACCCGAGCTGGCAGATACCACTACTACCATCCCCA
CGAAAACTCAGGACAAATCTGTTGCAGAAGCACTTGAGGAGCCCAAGGCG
GCCAATACCAATGCCCTAAAGGTGAAGGTCGCGGCCAAAACCGATGAATC
TAACTCCTCAGTTACCGAAATTCCCATCAAGGAAGCACAAAATGAGGCAG
AGACTACGTCTCCTGCTGGCACGCGATCTGCTTCGGGCTCTATCATCCTG
TTGGGAACGATATTTGTTTTGTCCGTCTCAGCGTTTTTTGCATGAGTGCA
TAGCGTGAGCGAAATGTGCTATGTACGAAGGCAAATTTCATTCGGATTTT
GTAGGTGCCGTCGTTGTTATTTATTTTTCATAAGTATGAGTACAGCGAGA
GGACATGACCGAGAGGGATATGGGCCGCCATGGAGATGTAAAAGTACCGT
GTAAATCAAGCAAAAACAAAGAAGAGAACCAAAAAACCAGAACCAAACGC
AAC
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protein sequence of NO05G02630.1

>NO05G02630.1-protein ID=NO05G02630.1-protein|Name=NO05G02630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MRIFSILLAAVTILAPVAVLGEIETNAVKDTSVSDVLHDEDLEGVAARKL
EFLNLEVDQKGCYLLTGPESGLLLLLCEDDAGARKRYTDEGILVDLAESP
EETNEDMYSWVNGTITNLGEIAICNVAFASRDTDLTTDALDVVPINLPTT
ALDESLFDSVDLAPGESIDFAYFLPFNAARNAPAFVGLSKSLHACSEAKE
KFVPELPEWDEVETTGEAVDKLVDAANIVVDATQETTGEMLDTTQQFTQG
FVDGTQDKLDATIDSLQAVSKPPELADTTTTIPTKTQDKSVAEALEEPKA
ANTNALKVKVAAKTDESNSSVTEIPIKEAQNEAETTSPAGTRSASGSIIL
LGTIFVLSVSAFFA*
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Synonyms
Publications