NO05G02630.1, NO05G02630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02630.1
Unique NameNO05G02630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1348
Alignment locationchr5:697968..699470 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:697968..699470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02630.1 vs.
Match: EWM28105.1 (gtp-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 230.7 bits (587), Expect = 7.200e-57
Identity = 161/378 (42.59%), Postives = 218/378 (57.67%), Query Frame = 0 
Query:    1 MRIFSILLAAVTILAPVAVLGEIETNAVKDTS--VSDV-LHDEDLEGVAARKLEFLNLEVDQKGCYLLTGPESGLLLLLCEDDAGARKRYTDEGILVD-----LAESPEETNEDMYSWVNGTITNLGEIAICNVAFASRDTDLTTDALDVVPINLPTTALDESLFDSVDLAPGESIDFAYFLPFNAARNAPAFVGLSKSLHACSEAKEKFVPELPEWDEVETTGEAVDKLVD------AANIVVDATQETTGEMLDTTQQFTQGFVDGTQDKLDATIDSLQAVSKPPELADTTTTIPTKTQDKSVAEALEEPK-AANTNALKVKVAAKTDESNSSVTEIPIKEAQNEAETTSPAGTRSASGSIILLGTIFVLSVSAFF 364
            MR  S +LA  TILAP  V G+++ + + +T   VSDV L+    EG  A+ +E L L +D++GCY+L GPES L L LCEDD GAR+++T EG  +      L+ +  ET  + +SWVNGT+TN+GE+ IC VAFASRDT+L  +AL  +P+NLPTT +D    +SVDLAPG++IDFAY LPF+ +R+APAFVGL+ SL ACS A   FVP +     V T    V+K+ D      A+  V+D TQ  +   +DT Q      +D TQ KLD  I++LQ      E   T     + + D + A A    K AA    ++V     TD +N   +  P +E   E   TSPAG  + S +I LL     LS  A F
Sbjct:  664 MRTLSKVLATTTILAPSLVFGDVQ-DTLHETRHPVSDVILNGNTKEGHQAKAVETLKLRIDERGCYVLAGPESKLSLSLCEDDVGARQQFTKEGTPIKTVNDGLSFAMSETPVETFSWVNGTVTNIGEVPICYVAFASRDTNLLAEALHTIPVNLPTTTVDVPPVESVDLAPGQAIDFAYLLPFDDSRDAPAFVGLANSLQACSHAVRTFVPVM----SVMTKATDVEKIDDKGAGASASTTVIDKTQVKSAAAVDTIQATANNALDSTQSKLDEAINNLQNALGRSEAKKTVPVATSTSVDANAASAGSMSKDAAKPAGVEVTKETGTD-TNRDASHSPTEE--EELVNTSPAGHVTTSANIFLLVLTATLSGMAVF 1033
The following BLAST results are available for this feature:
BLAST of NO05G02630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28105.17.200e-5742.59gtp-binding protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02630NO05G02630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02630.1NO05G02630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02630.1.cds1NO05G02630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02630.1.cds2NO05G02630.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02630.1 ID=NO05G02630.1|Name=NO05G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1348bp
AACATACAGGGTGTCACACACACGCCCTTTACGAAGCCAATTAGCATGCG
TATTTTCTCCATACTCCTCGCCGCAGTCACGATTCTGGCCCCCGTCGCTG
TACTAGGTGAGATCGAGACGAATGCAGTGAAGGACACCTCTGTATCGGAC
GTCCTCCATGATGAGGACTTGGAAGGAGTCGCAGCGAGAAAGCTCGAGTT
TCTGAACCTAGAGGTTGATCAGAAGGGATGCTATCTCCTGACGGGTCCTG
AATCTGGATTGTTATTATTGCTTTGCGAGGACGATGCCGGGGCACGCAAG
CGTTATACCGATGAGGGTATCCTTGTTGACTTAGCCGAATCCCCTGAAGA
AACGAACGAGGACATGTACTCTTGGGTCAATGGCACCATCACGAACCTTG
GAGAAATTGCTATCTGTAATGTGGCGTTTGCTTCACGGGACACTGATCTT
ACCACAGATGCCCTTGACGTCGTGCCTATCAATCTTCCCACGACCGCACT
GGACGAATCGCTGTTTGATTCCGTGGACCTAGCCCCCGGGGAGTCGATCG
ACTTTGCTTACTTTTTGCCTTTCAATGCCGCTCGCAACGCGCCAGCCTTC
GTAGGCTTATCCAAATCTCTTCATGCCTGCTCGGAAGCCAAGGAGAAGTT
CGTGCCCGAGCTGCCGGAGTGGGATGAAGTAGAGACTACTGGTGAGGCAG
TAGACAAGCTGGTTGATGCCGCAAACATTGTCGTTGATGCCACCCAAGAG
ACGACCGGCGAGATGCTGGACACGACGCAGCAGTTCACACAGGGATTTGT
GGACGGTACTCAGGATAAGCTTGATGCTACCATAGATTCCTTGCAGGCCG
TGTCGAAGCCACCCGAGCTGGCAGATACCACTACTACCATCCCCACGAAA
ACTCAGGACAAATCTGTTGCAGAAGCACTTGAGGAGCCCAAGGCGGCCAA
TACCAATGCCCTAAAGGTGAAGGTCGCGGCCAAAACCGATGAATCTAACT
CCTCAGTTACCGAAATTCCCATCAAGGAAGCACAAAATGAGGCAGAGACT
ACGTCTCCTGCTGGCACGCGATCTGCTTCGGGCTCTATCATCCTGTTGGG
AACGATATTTGTTTTGTCCGTCTCAGCGTTTTTTGCATGAGTGCATAGCG
TGAGCGAAATGTGCTATGTACGAAGGCAAATTTCATTCGGATTTTGTAGG
TGCCGTCGTTGTTATTTATTTTTCATAAGTATGAGTACAGCGAGAGGACA
TGACCGAGAGGGATATGGGCCGCCATGGAGATGTAAAAGTACCGTGTAAA
TCAAGCAAAAACAAAGAAGAGAACCAAAAAACCAGAACCAAACGCAAC
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protein sequence of NO05G02630.1

>NO05G02630.1-protein ID=NO05G02630.1-protein|Name=NO05G02630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MRIFSILLAAVTILAPVAVLGEIETNAVKDTSVSDVLHDEDLEGVAARKL
EFLNLEVDQKGCYLLTGPESGLLLLLCEDDAGARKRYTDEGILVDLAESP
EETNEDMYSWVNGTITNLGEIAICNVAFASRDTDLTTDALDVVPINLPTT
ALDESLFDSVDLAPGESIDFAYFLPFNAARNAPAFVGLSKSLHACSEAKE
KFVPELPEWDEVETTGEAVDKLVDAANIVVDATQETTGEMLDTTQQFTQG
FVDGTQDKLDATIDSLQAVSKPPELADTTTTIPTKTQDKSVAEALEEPKA
ANTNALKVKVAAKTDESNSSVTEIPIKEAQNEAETTSPAGTRSASGSIIL
LGTIFVLSVSAFFA*
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mRNA from alignment at chr5:697968..699470-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02630.1 ID=NO05G02630.1|Name=NO05G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1503bp|location=Sequence derived from alignment at chr5:697968..699470- (Nannochloropsis oceanica)
AACATACAGGGTGTCACACACACGCCCTTTACGAAGCCAATTAGCATGCG
TATTTTCTCCATACTCCTCGCCGCAGTCACGATTCTGGCCCCCGTCGCTG
TACTAGGTGAGATCGAGACGAATGCAGTGAAGGACACCTCTGTATCGGAC
GTCCTCCATGATGAGGACTTGGAAGGAGTCGCAGCGAGAAAGCTCGAGTT
TCTGAACCTAGAGGTTGATCAGAAGGGATGCTATCTCCTGACGGGTCCTG
AATCTGGATTGTTATTATTGCTTTGCGAGGACGATGCCGGGGCACGCAAG
CGTTATACCGATGAGGGTGAGTGCTAGAAGTTGCGAATCTTGGTATTGCA
CCATGCACATCAAAAGCCCTCTTGAGAGGAGAACGTGCAACGAGTTAAAA
AGTATCCCCTCCTGCATGAGGTTGCATACATGTACTGTGATACTCATGTC
ATGCTATTCCCATACGCACAGGTATCCTTGTTGACTTAGCCGAATCCCCT
GAAGAAACGAACGAGGACATGTACTCTTGGGTCAATGGCACCATCACGAA
CCTTGGAGAAATTGCTATCTGTAATGTGGCGTTTGCTTCACGGGACACTG
ATCTTACCACAGATGCCCTTGACGTCGTGCCTATCAATCTTCCCACGACC
GCACTGGACGAATCGCTGTTTGATTCCGTGGACCTAGCCCCCGGGGAGTC
GATCGACTTTGCTTACTTTTTGCCTTTCAATGCCGCTCGCAACGCGCCAG
CCTTCGTAGGCTTATCCAAATCTCTTCATGCCTGCTCGGAAGCCAAGGAG
AAGTTCGTGCCCGAGCTGCCGGAGTGGGATGAAGTAGAGACTACTGGTGA
GGCAGTAGACAAGCTGGTTGATGCCGCAAACATTGTCGTTGATGCCACCC
AAGAGACGACCGGCGAGATGCTGGACACGACGCAGCAGTTCACACAGGGA
TTTGTGGACGGTACTCAGGATAAGCTTGATGCTACCATAGATTCCTTGCA
GGCCGTGTCGAAGCCACCCGAGCTGGCAGATACCACTACTACCATCCCCA
CGAAAACTCAGGACAAATCTGTTGCAGAAGCACTTGAGGAGCCCAAGGCG
GCCAATACCAATGCCCTAAAGGTGAAGGTCGCGGCCAAAACCGATGAATC
TAACTCCTCAGTTACCGAAATTCCCATCAAGGAAGCACAAAATGAGGCAG
AGACTACGTCTCCTGCTGGCACGCGATCTGCTTCGGGCTCTATCATCCTG
TTGGGAACGATATTTGTTTTGTCCGTCTCAGCGTTTTTTGCATGAGTGCA
TAGCGTGAGCGAAATGTGCTATGTACGAAGGCAAATTTCATTCGGATTTT
GTAGGTGCCGTCGTTGTTATTTATTTTTCATAAGTATGAGTACAGCGAGA
GGACATGACCGAGAGGGATATGGGCCGCCATGGAGATGTAAAAGTACCGT
GTAAATCAAGCAAAAACAAAGAAGAGAACCAAAAAACCAGAACCAAACGC
AAC
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Coding sequence (CDS) from alignment at chr5:697968..699470-

>NO05G02630.1 ID=NO05G02630.1|Name=NO05G02630.1|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at chr5:697968..699470- (Nannochloropsis oceanica)
ATGCGTATTTTCTCCATACTCCTCGCCGCAGTCACGATTCTGGCCCCCGT
CGCTGTACTAGGTGAGATCGAGACGAATGCAGTGAAGGACACCTCTGTAT
CGGACGTCCTCCATGATGAGGACTTGGAAGGAGTCGCAGCGAGAAAGCTC
GAGTTTCTGAACCTAGAGGTTGATCAGAAGGGATGCTATCTCCTGACGGG
TCCTGAATCTGGATTGTTATTATTGCTTTGCGAGGACGATGCCGGGGCAC
GCAAGCGTTATACCGATGAGGGTATCCTTGTTGACTTAGCCGAATCCCCT
GAAGAAACGAACGAGGACATGTACTCTTGGGTCAATGGCACCATCACGAA
CCTTGGAGAAATTGCTATCTGTAATGTGGCGTTTGCTTCACGGGACACTG
ATCTTACCACAGATGCCCTTGACGTCGTGCCTATCAATCTTCCCACGACC
GCACTGGACGAATCGCTGTTTGATTCCGTGGACCTAGCCCCCGGGGAGTC
GATCGACTTTGCTTACTTTTTGCCTTTCAATGCCGCTCGCAACGCGCCAG
CCTTCGTAGGCTTATCCAAATCTCTTCATGCCTGCTCGGAAGCCAAGGAG
AAGTTCGTGCCCGAGCTGCCGGAGTGGGATGAAGTAGAGACTACTGGTGA
GGCAGTAGACAAGCTGGTTGATGCCGCAAACATTGTCGTTGATGCCACCC
AAGAGACGACCGGCGAGATGCTGGACACGACGCAGCAGTTCACACAGGGA
TTTGTGGACGGTACTCAGGATAAGCTTGATGCTACCATAGATTCCTTGCA
GGCCGTGTCGAAGCCACCCGAGCTGGCAGATACCACTACTACCATCCCCA
CGAAAACTCAGGACAAATCTGTTGCAGAAGCACTTGAGGAGCCCAAGGCG
GCCAATACCAATGCCCTAAAGGTGAAGGTCGCGGCCAAAACCGATGAATC
TAACTCCTCAGTTACCGAAATTCCCATCAAGGAAGCACAAAATGAGGCAG
AGACTACGTCTCCTGCTGGCACGCGATCTGCTTCGGGCTCTATCATCCTG
TTGGGAACGATATTTGTTTTGTCCGTCTCAGCGTTTTTTGCATGA
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Synonyms
Publications