NO05G02570, NO05G02570 (gene) Nannochloropsis oceanica

Overview
NameNO05G02570
Unique NameNO05G02570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2232
Alignment locationchr5:677304..679535 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:677304..679535 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO05G02570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL083nonsL083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR121ngnoR121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003591NSK003591Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02570.1NO05G02570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G02570.2NO05G02570.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584406gene_3058Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02570.1NO05G02570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G02570.2NO05G02570.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02570 ID=NO05G02570|Name=NO05G02570|organism=Nannochloropsis oceanica|type=gene|length=2232bp
CAAAAGCCATAAATATCCGGCAACACTGGCTCGCAAAGCCACCCTTCAAA
GGGCAGACGCACGCAACAGTACACATCCAACACGCGCACAACGTGCAAGC
CAACCCACAAGAGGAATTCCGTAACGCCGCCGCAACGTTCTTTCTCGTCG
TGTTTATGCTCCCAGAAACCTGCGCGGAACAAATTTGTGCGGCGAATCCC
GGAAGTGTCAGgtgagacagaacatttgccaagctatttgtttacaatac
ttactttgtggtgctccacacaacgtctcttttaccgcctggtccgccat
cacacagCAAGCAAGCTAACTCAACACACAAGTCAGCTCTACATTAGAAC
CATGTCGGCACGCCACGGACAAGGAAGTCGGgtaagttgcggacggggat
tcacttagcgtttaaaacttgccgctacctctccatgtcctcagcattca
ctctctctccggttggatgaatttcccttaaattgaattgcaaagttttt
tatgctccacgtctttacgtttcttcacttcatatcaactcactccccgt
agGATGAGGAGATGAAGGAAGCAGTAAATGAGACAATTCAATCCAGCATT
CAGCAAGGGAAGGAAGCCTTTGAGCACTTGAAGGAAGACCCTGGGGACAA
TTTGTTGAGCGTCGCGCTCCTCATCCATGCTGCGGTCAACATGTGGCAGT
CGGTCATGTTAATCTGGCGCCCGCAGCAAATGGTGTCCGGTCTTCTGGGT
GGCATCGAGACGAAATGGCACGGCAGCAGCCAGTGGTCACTTTTGCGTTG
CCTCGCGTTCCAGACGCTCGCCATGGGCCTGGCGACCGGCGGCGCGGCGA
TCAAGTACTCTTCTAAGGACAAGGCGATCCTCAATTCGATCTTGCTGGCC
TTCCATGCCGTTACTATGAGCGATATGTTATATTACAAGTGGTATAAGGA
AAGTAGCTTTTCCTACACGCCATTATTTTTTCACTTGCCTATGCTTGCCC
TCCACACGCTTGCCCTCCTCGGGTACAATAAGAGCGAGGCTATGAGCACG
GGGATGCAGACGCGCAGCAAAACCAAGCGCACGTAAGGGGAGGGGGAAAC
ATGCTGGAAGACGTCGACAGGCAACAATTGCCGGCGGGAAAGCATAGGCG
GGATTGTCAATGAGTAATTTTGAGGGTATGGCCACGAGATAGAGCTGGCT
TATGATCTCTGAATGTAAAAGAGAGAGATGAGGTACGACATGGGGAATAT
CAAAGAGAAAGAAAAAGCATGGAAAAGACACGCCTTAAATGAAGTTGCTT
AGGCTGGACTTGTGCATGTAGCAAAGAGAAAGAGAGAAGAGTCCCTAGGA
GAGCGTATTGATATAAGGAGGGTGCACTGAGGCTAATGCTTCAAAGCTGA
TTCCTGGGACGAAGCACACGGCAGATTTAAAAAAAAGACACTTGTCGGGA
TGTGAACAAAAAGGCAAAGAGAGAGAGAAGTGAGAGGAAAATGGAAAGGA
TATACAGATCTAGATTTTTTGTCGAAAATATTTATTCACAAAGTCTCCAT
CGCTTTGACTCACACAAACCCCAAGTCGCTCTCGATATAAGACTCTCCCG
AAATGTTCGCTTTCAAGGCCGCAAGCTGGGGACGAAACACCTGGAACGAC
TCACTACTTCGATGTACACGCAGATACGCATCATCCTTGTCTACGTAGCG
CTCGAATATTAGGACCATGAGAGGGTCCTTGTCACTTATGGCCAAACCAT
ATGACAATGTGCCGGCTTCGTTTTCTTTTACGACGACGGCAAGCGGTGCA
AAGGCGGCCTTAAAGATCTCCACGTCCTCAGATCTTCGGAAAGTCACGGA
TACAACCAACCAGAAGGCACCTACGGATTTGAAAAAGAGCGAAAGGGGAG
TTTAGGGGGACAAATAATGGGAAGGTGGGTGGCAAACGAGGAGTAAGCAA
GGAAGAGGAGCCTTTGGATCGCCTCGCAAAGTGCGAGTCACTGAACAAGT
TGTGAAAATCAGAACTTTTGCAAGGGGCCTCTGCTGTCCTCCAAACACGA
ACCTGGGACTGGTCTGCGTGGGTGACTGGCAGTGGCGACGACAGGTTTCT
GTGGCATCGTTTGATGGTTTGGACGGCTCAAAAGAAATGTCAAAGTACAG
CCCGCGAACAGGCCAACTAAGAATAATGGGAAAGGGGAATAGCGGTCGAT
CTTTCGCAGCCACTTGTCCATTGTACCTGTTG
back to top

protein sequence of NO05G02570.1

>NO05G02570.1-protein ID=NO05G02570.1-protein|Name=NO05G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MSARHGQGSRDEEMKEAVNETIQSSIQQGKEAFEHLKEDPGDNLLSVALL
IHAAVNMWQSVMLIWRPQQMVSGLLGGIETKWHGSSQWSLLRCLAFQTLA
MGLATGGAAIKYSSKDKAILNSILLAFHAVTMSDMLYYKWYKESSFSYTP
LFFHLPMLALHTLALLGYNKSEAMSTGMQTRSKTKRT*
back to top

protein sequence of NO05G02570.2

>NO05G02570.2-protein ID=NO05G02570.2-protein|Name=NO05G02570.2|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MSARHGQGSRDEEMKEAVNETIQSSIQQGKEAFEHLKEDPGDNLLSVALL
IHAAVNMWQSVMLIWRPQQMVSGLLGGIETKWHGSSQWSLLRCLAFQTLA
MGLATGGAAIKYSSKDKAILNSILLAFHAVTMSDMLYYKWYKESSFSYTP
LFFHLPMLALHTLALLGYNKSEAMSTGMQTRSKTKRT*
back to top
Synonyms
Publications