NO05G02570.2, NO05G02570.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02570.2
Unique NameNO05G02570.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2061
Alignment locationchr5:677304..679535 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:677304..679535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO05G02570.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02570NO05G02570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02570.2NO05G02570.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02570.2.cds1NO05G02570.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02570.2.cds2NO05G02570.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02570.2 ID=NO05G02570.2|Name=NO05G02570.2|organism=Nannochloropsis oceanica|type=mRNA|length=2061bp
CAAAAGCCATAAATATCCGGCAACACTGGCTCGCAAAGCCACCCTTCAAA
GGGCAGACGCACGCAACAGTACACATCCAACACGCGCACAACGTGCAAGC
CAACCCACAAGAGGAATTCCGTAACGCCGCCGCAACGTTCTTTCTCGTCG
TGTTTATGCTCCCAGAAACCTGCGCGGAACAAATTTGTGCGGCGAATCCC
GGAAGTGTCAGGTGAGACAGAACATTTGCCAAGCTATTTGTTTACAATAC
TTACTTTGTGGTGCTCCACACAACGTCTCTTTTACCGCCTGGTCCGCCAT
CACACAGCAAGCAAGCTAACTCAACACACAAGTCAGCTCTACATTAGAAC
CATGTCGGCACGCCACGGACAAGGAAGTCGGGATGAGGAGATGAAGGAAG
CAGTAAATGAGACAATTCAATCCAGCATTCAGCAAGGGAAGGAAGCCTTT
GAGCACTTGAAGGAAGACCCTGGGGACAATTTGTTGAGCGTCGCGCTCCT
CATCCATGCTGCGGTCAACATGTGGCAGTCGGTCATGTTAATCTGGCGCC
CGCAGCAAATGGTGTCCGGTCTTCTGGGTGGCATCGAGACGAAATGGCAC
GGCAGCAGCCAGTGGTCACTTTTGCGTTGCCTCGCGTTCCAGACGCTCGC
CATGGGCCTGGCGACCGGCGGCGCGGCGATCAAGTACTCTTCTAAGGACA
AGGCGATCCTCAATTCGATCTTGCTGGCCTTCCATGCCGTTACTATGAGC
GATATGTTATATTACAAGTGGTATAAGGAAAGTAGCTTTTCCTACACGCC
ATTATTTTTTCACTTGCCTATGCTTGCCCTCCACACGCTTGCCCTCCTCG
GGTACAATAAGAGCGAGGCTATGAGCACGGGGATGCAGACGCGCAGCAAA
ACCAAGCGCACGTAAGGGGAGGGGGAAACATGCTGGAAGACGTCGACAGG
CAACAATTGCCGGCGGGAAAGCATAGGCGGGATTGTCAATGAGTAATTTT
GAGGGTATGGCCACGAGATAGAGCTGGCTTATGATCTCTGAATGTAAAAG
AGAGAGATGAGGTACGACATGGGGAATATCAAAGAGAAAGAAAAAGCATG
GAAAAGACACGCCTTAAATGAAGTTGCTTAGGCTGGACTTGTGCATGTAG
CAAAGAGAAAGAGAGAAGAGTCCCTAGGAGAGCGTATTGATATAAGGAGG
GTGCACTGAGGCTAATGCTTCAAAGCTGATTCCTGGGACGAAGCACACGG
CAGATTTAAAAAAAAGACACTTGTCGGGATGTGAACAAAAAGGCAAAGAG
AGAGAGAAGTGAGAGGAAAATGGAAAGGATATACAGATCTAGATTTTTTG
TCGAAAATATTTATTCACAAAGTCTCCATCGCTTTGACTCACACAAACCC
CAAGTCGCTCTCGATATAAGACTCTCCCGAAATGTTCGCTTTCAAGGCCG
CAAGCTGGGGACGAAACACCTGGAACGACTCACTACTTCGATGTACACGC
AGATACGCATCATCCTTGTCTACGTAGCGCTCGAATATTAGGACCATGAG
AGGGTCCTTGTCACTTATGGCCAAACCATATGACAATGTGCCGGCTTCGT
TTTCTTTTACGACGACGGCAAGCGGTGCAAAGGCGGCCTTAAAGATCTCC
ACGTCCTCAGATCTTCGGAAAGTCACGGATACAACCAACCAGAAGGCACC
TACGGATTTGAAAAAGAGCGAAAGGGGAGTTTAGGGGGACAAATAATGGG
AAGGTGGGTGGCAAACGAGGAGTAAGCAAGGAAGAGGAGCCTTTGGATCG
CCTCGCAAAGTGCGAGTCACTGAACAAGTTGTGAAAATCAGAACTTTTGC
AAGGGGCCTCTGCTGTCCTCCAAACACGAACCTGGGACTGGTCTGCGTGG
GTGACTGGCAGTGGCGACGACAGGTTTCTGTGGCATCGTTTGATGGTTTG
GACGGCTCAAAAGAAATGTCAAAGTACAGCCCGCGAACAGGCCAACTAAG
AATAATGGGAAAGGGGAATAGCGGTCGATCTTTCGCAGCCACTTGTCCAT
TGTACCTGTTG
back to top

protein sequence of NO05G02570.2

>NO05G02570.2-protein ID=NO05G02570.2-protein|Name=NO05G02570.2|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MSARHGQGSRDEEMKEAVNETIQSSIQQGKEAFEHLKEDPGDNLLSVALL
IHAAVNMWQSVMLIWRPQQMVSGLLGGIETKWHGSSQWSLLRCLAFQTLA
MGLATGGAAIKYSSKDKAILNSILLAFHAVTMSDMLYYKWYKESSFSYTP
LFFHLPMLALHTLALLGYNKSEAMSTGMQTRSKTKRT*
back to top

mRNA from alignment at chr5:677304..679535+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02570.2 ID=NO05G02570.2|Name=NO05G02570.2|organism=Nannochloropsis oceanica|type=mRNA|length=2232bp|location=Sequence derived from alignment at chr5:677304..679535+ (Nannochloropsis oceanica)
CAAAAGCCATAAATATCCGGCAACACTGGCTCGCAAAGCCACCCTTCAAA
GGGCAGACGCACGCAACAGTACACATCCAACACGCGCACAACGTGCAAGC
CAACCCACAAGAGGAATTCCGTAACGCCGCCGCAACGTTCTTTCTCGTCG
TGTTTATGCTCCCAGAAACCTGCGCGGAACAAATTTGTGCGGCGAATCCC
GGAAGTGTCAGGTGAGACAGAACATTTGCCAAGCTATTTGTTTACAATAC
TTACTTTGTGGTGCTCCACACAACGTCTCTTTTACCGCCTGGTCCGCCAT
CACACAGCAAGCAAGCTAACTCAACACACAAGTCAGCTCTACATTAGAAC
CATGTCGGCACGCCACGGACAAGGAAGTCGGGTAAGTTGCGGACGGGGAT
TCACTTAGCGTTTAAAACTTGCCGCTACCTCTCCATGTCCTCAGCATTCA
CTCTCTCTCCGGTTGGATGAATTTCCCTTAAATTGAATTGCAAAGTTTTT
TATGCTCCACGTCTTTACGTTTCTTCACTTCATATCAACTCACTCCCCGT
AGGATGAGGAGATGAAGGAAGCAGTAAATGAGACAATTCAATCCAGCATT
CAGCAAGGGAAGGAAGCCTTTGAGCACTTGAAGGAAGACCCTGGGGACAA
TTTGTTGAGCGTCGCGCTCCTCATCCATGCTGCGGTCAACATGTGGCAGT
CGGTCATGTTAATCTGGCGCCCGCAGCAAATGGTGTCCGGTCTTCTGGGT
GGCATCGAGACGAAATGGCACGGCAGCAGCCAGTGGTCACTTTTGCGTTG
CCTCGCGTTCCAGACGCTCGCCATGGGCCTGGCGACCGGCGGCGCGGCGA
TCAAGTACTCTTCTAAGGACAAGGCGATCCTCAATTCGATCTTGCTGGCC
TTCCATGCCGTTACTATGAGCGATATGTTATATTACAAGTGGTATAAGGA
AAGTAGCTTTTCCTACACGCCATTATTTTTTCACTTGCCTATGCTTGCCC
TCCACACGCTTGCCCTCCTCGGGTACAATAAGAGCGAGGCTATGAGCACG
GGGATGCAGACGCGCAGCAAAACCAAGCGCACGTAAGGGGAGGGGGAAAC
ATGCTGGAAGACGTCGACAGGCAACAATTGCCGGCGGGAAAGCATAGGCG
GGATTGTCAATGAGTAATTTTGAGGGTATGGCCACGAGATAGAGCTGGCT
TATGATCTCTGAATGTAAAAGAGAGAGATGAGGTACGACATGGGGAATAT
CAAAGAGAAAGAAAAAGCATGGAAAAGACACGCCTTAAATGAAGTTGCTT
AGGCTGGACTTGTGCATGTAGCAAAGAGAAAGAGAGAAGAGTCCCTAGGA
GAGCGTATTGATATAAGGAGGGTGCACTGAGGCTAATGCTTCAAAGCTGA
TTCCTGGGACGAAGCACACGGCAGATTTAAAAAAAAGACACTTGTCGGGA
TGTGAACAAAAAGGCAAAGAGAGAGAGAAGTGAGAGGAAAATGGAAAGGA
TATACAGATCTAGATTTTTTGTCGAAAATATTTATTCACAAAGTCTCCAT
CGCTTTGACTCACACAAACCCCAAGTCGCTCTCGATATAAGACTCTCCCG
AAATGTTCGCTTTCAAGGCCGCAAGCTGGGGACGAAACACCTGGAACGAC
TCACTACTTCGATGTACACGCAGATACGCATCATCCTTGTCTACGTAGCG
CTCGAATATTAGGACCATGAGAGGGTCCTTGTCACTTATGGCCAAACCAT
ATGACAATGTGCCGGCTTCGTTTTCTTTTACGACGACGGCAAGCGGTGCA
AAGGCGGCCTTAAAGATCTCCACGTCCTCAGATCTTCGGAAAGTCACGGA
TACAACCAACCAGAAGGCACCTACGGATTTGAAAAAGAGCGAAAGGGGAG
TTTAGGGGGACAAATAATGGGAAGGTGGGTGGCAAACGAGGAGTAAGCAA
GGAAGAGGAGCCTTTGGATCGCCTCGCAAAGTGCGAGTCACTGAACAAGT
TGTGAAAATCAGAACTTTTGCAAGGGGCCTCTGCTGTCCTCCAAACACGA
ACCTGGGACTGGTCTGCGTGGGTGACTGGCAGTGGCGACGACAGGTTTCT
GTGGCATCGTTTGATGGTTTGGACGGCTCAAAAGAAATGTCAAAGTACAG
CCCGCGAACAGGCCAACTAAGAATAATGGGAAAGGGGAATAGCGGTCGAT
CTTTCGCAGCCACTTGTCCATTGTACCTGTTG
back to top

Coding sequence (CDS) from alignment at chr5:677304..679535+

>NO05G02570.2 ID=NO05G02570.2|Name=NO05G02570.2|organism=Nannochloropsis oceanica|type=CDS|length=564bp|location=Sequence derived from alignment at chr5:677304..679535+ (Nannochloropsis oceanica)
ATGTCGGCACGCCACGGACAAGGAAGTCGGGATGAGGAGATGAAGGAAGC
AGTAAATGAGACAATTCAATCCAGCATTCAGCAAGGGAAGGAAGCCTTTG
AGCACTTGAAGGAAGACCCTGGGGACAATTTGTTGAGCGTCGCGCTCCTC
ATCCATGCTGCGGTCAACATGTGGCAGTCGGTCATGTTAATCTGGCGCCC
GCAGCAAATGGTGTCCGGTCTTCTGGGTGGCATCGAGACGAAATGGCACG
GCAGCAGCCAGTGGTCACTTTTGCGTTGCCTCGCGTTCCAGACGCTCGCC
ATGGGCCTGGCGACCGGCGGCGCGGCGATCAAGTACTCTTCTAAGGACAA
GGCGATCCTCAATTCGATCTTGCTGGCCTTCCATGCCGTTACTATGAGCG
ATATGTTATATTACAAGTGGTATAAGGAAAGTAGCTTTTCCTACACGCCA
TTATTTTTTCACTTGCCTATGCTTGCCCTCCACACGCTTGCCCTCCTCGG
GTACAATAAGAGCGAGGCTATGAGCACGGGGATGCAGACGCGCAGCAAAA
CCAAGCGCACGTAA
back to top
Synonyms
Publications