NO05G02440, NO05G02440 (gene) Nannochloropsis oceanica

Overview
NameNO05G02440
Unique NameNO05G02440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2042
Alignment locationchr5:650022..652063 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:650022..652063 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G02440 vs. NCBI_GenBank
Match: EWM28132.1 (hypothetical protein Naga_100036g17 [Nannochloropsis gaditana])

HSP 1 Score: 100.9 bits (250), Expect = 8.600e-18
Identity = 83/262 (31.68%), Postives = 115/262 (43.89%), Query Frame = 0 
Query:  107 ADVSSPLQTLVEDQAMLSVFWSEWRAAEHKFLCRAEAKHISPEYNHLPAETTPTRRSSXXXXXXXXXI-------------TDPFSSSRCASPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLVQQENAVCMTEEDRDAKQAECSGVGGGKKDEGEDVAARGEGATDAGAALARQAAYEAKIQKLEAQMVETEVLLGSDTGTIILGLERELAQTRLELAEMEAAKDDLEVQLVNL 356
            ++  S L +L+E+Q MLS FW +WR AEHKFL ++  +  + +  H   E+TP+R            +               P  +S                                                            S +  +    +TE+ RDAKQA+    GGG   +GE+               AR  AYE +IQ+LEA++VETEVLL SD+GT+I GLER+LAQ RL LA MEA KDDLEVQ++N+
Sbjct:   24 SEAESSLLSLMEEQVMLSAFWGDWRIAEHKFLFQSTGRRRTDKM-HAVTESTPSRGGGENSSEMQQRLLAYCEVDEALPGRVSPKPTSPQRGKRVTEIVESKRKKEEDLEAWLLSSMLLHEEEGPEDSSERNGIHWHGPRQLEGQRQSSSLSHQQCHPITEDGRDAKQAQ---DGGG---QGEEDKXXXXXXXXXXXXXARLRAYEGRIQELEAKLVETEVLLSSDSGTVICGLERDLAQARLALANMEAEKDDLEVQVLNM 278
The following BLAST results are available for this feature:
BLAST of NO05G02440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28132.18.600e-1831.68hypothetical protein Naga_100036g17 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL083nonsL083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR121ngnoR121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003579NSK003579Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02440.1NO05G02440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G02440.2NO05G02440.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100036g17gene2453Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02440.1NO05G02440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G02440.2NO05G02440.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02440 ID=NO05G02440|Name=NO05G02440|organism=Nannochloropsis oceanica|type=gene|length=2042bp
CCGCAATCCAGCAGAAATTTCTGTGAGAGTATGGATATGGGGTATGTTGA
GATCAATCAGGGGCCAGACCAGCAAGGCACTCGCGAAGTATGGCAATAAT
GCGATGCAAAGAGAAGGAGCAAATCAGCAAAAGAACTTCCTTGAAGGAGA
TCGATAGTGACTCTCGAGCATAGTAAGTTGTGTAATCATCTGTGTCCGAA
ACTATTGTTGCGCATCAATATATACCGCCTTGGCTGGCAGCCTGTAAACA
TCCCAAGCCCCATGACCATGCTATCCAACTAGTCGCCCTCTCGCCTTAGC
CGGCCTTAGCCCCCCTTCGCCGACCGAGAAACACAGCAATGAAAAAGTAC
GGGAGAGAGGGCTACCCACAGACACACACATGCGTGCTTACCCGGTCCTG
CCCACCCTCTTGCCTTCATACATCGACAGAGAGACTACCGTACTTCGAGG
CCTGGAATCCTAGCCCTCTTTCCTACTTGCACGCCCTCGCTCCTGCTCCA
AGCTCACGATTCCAACCCCGCCCCCTCATTTCCTCATTACACCTGACAAC
ATTCCCTTTCTCCCGGGAAATTTCCTCCAGCCCTTCGCGCCGGAGTATGC
CGCCTCCACCGTCGCTCTCCTCCCCGCGACCACCATCGTCGTCAGCAGCT
CACCAAGCTGACGTCTCGTCGCCTTTGCAGACGCTGGTGGAGGACCAGGC
CATGCTAAGCGTCTTCTGGAGCGAATGGCGTGCGGCCGAGCACAAGTTTC
TTTGTCGTGCCGAAGgtatgtcacgggggaggaagtctaccggtttttga
tgtgagagggagagggaggggagtatgcgtctggatgtgtgcttgcacgc
atgaggggaaaagagggatggtgccctgaataaggccacgagttgctgca
tagcggaagagtggaaaacagcgtgcttcttaggctagtctattaatttc
tcacttgtactcataatcctggaaatctacttctttcgcatcctcaacag
CTAAACACATTTCACCCGAATACAATCACTTGCCGGCCGAGACGACGCCC
ACAAGAAGAAGCAGCAGAAGGCGCCCACGAGCCACGACGGTCATTACTGA
CCCCTTCTCCTCCTCTCGATGTGCAAGTCCAGGACGAGCGGCAACTGCTT
GTGAGGAGAACAAAGAAGGAGAGGAGGAAGAGGTGGAAGACCTGGAATCG
TTGTTGCTGTCCTCTATGCTACTTTTCGAGAAGGGCACCATTTTCAACAG
CAGCAGAATGCAGCAACAGCACCAGCACCAAAGACGACACCTTTCCTCGC
TCGTTCAACAAGAAAATGCTGTCTGTATGACAGAAGAGGATCGAGACGCC
AAGCAAGCCGAATGTAGTGGGGTCGGGGGAGGCAAAAAAGACGAGGGGGA
GGACGTGGCGGCAAGAGGGGAGGGAGCCACTGATGCTGGTGCCGCACTCG
CGAGGCAGGCGGCATACGAAGCGAAGATTCAGAAGTTGGAGGCCCAGATG
GTGGAGACAGAGGTGTTGTTAGGTTCGGACACGGGGACGATTATATTGGG
GTTGGAGgtgagtgaaaggcgtggataggagtggggagagggatggggtg
ggagggcgatggagttttcttggtaatttttgaaaaggaattgaactcgc
gatccactgggggcgttttacttcaaacggctgcttacagatacaccaca
cgtaacttcttacagCGGGAGCTTGCCCAAACCCGTCTGGAGCTTGCGGA
AATGGAGGCCGCGAAGGACGACTTGGAGGTGCAGCTGGTCAACCTGCTTC
ACAAAACTAGTGAGAAACGGAAGTAGGAAAGCAAGTTAAAAAAATGAACC
AACGACAGGGGCTGTATTTGTGGTGGAATAAGGAGGAGGGTAGGGTGGTA
CGTGTGTCTTCGCGGGGATGCGGAGGGAGGAGGTTTGCCTGAGGGAGCGG
ACGCATGCAGTCTTCTAGACCATTTTATTTGTAGCTCTGTGCCATAAACT
TGCAATTTGAAGAAGAAAATAAGAAAAGGACACATATACACC
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protein sequence of NO05G02440.1

>NO05G02440.1-protein ID=NO05G02440.1-protein|Name=NO05G02440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MKKYGREGYPQTHTCVLTRSCPPSCLHTSTERLPYFEAWNPSPLSYLHAL
APAPSSRFQPRPLISSLHLTTFPFSREISSSPSRRSMPPPPSLSSPRPPS
SSAAHQADVSSPLQTLVEDQAMLSVFWSEWRAAEHKFLCRAEAKHISPEY
NHLPAETTPTRRSSRRRPRATTVITDPFSSSRCASPGRAATACEENKEGE
EEEVEDLESLLLSSMLLFEKGTIFNSSRMQQQHQHQRRHLSSLVQQENAV
CMTEEDRDAKQAECSGVGGGKKDEGEDVAARGEGATDAGAALARQAAYEA
KIQKLEAQMVETEVLLGSDTGTIILGLERELAQTRLELAEMEAAKDDLEV
QLVNLLHKTSEKRK*
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protein sequence of NO05G02440.2

>NO05G02440.2-protein ID=NO05G02440.2-protein|Name=NO05G02440.2|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MKKYGREGYPQTHTCVLTRSCPPSCLHTSTERLPYFEAWNPSPLSYLHAL
APAPSSRFQPRPLISSLHLTTFPFSREISSSPSRRSMPPPPSLSSPRPPS
SSAAHQADVSSPLQTLVEDQAMLSVFWSEWRAAEHKFLCRAEAKHISPEY
NHLPAETTPTRRSSRRRPRATTVITDPFSSSRCASPGRAATACEENKEGE
EEEVEDLESLLLSSMLLFEKGTIFNSSRMQQQHQHQRRHLSSLVQQENAV
CMTEEDRDAKQAECSGVGGGKKDEGEDVAARGEGATDAGAALARQAAYEA
KIQKLEAQMVETEVLLGSDTGTIILGLEVSERRG*
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Synonyms
Publications