NO05G02440.1, NO05G02440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02440.1
Unique NameNO05G02440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1649
Alignment locationchr5:650022..652063 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:650022..652063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02440.1 vs.
Match: EWM28132.1 (hypothetical protein Naga_100036g17 [Nannochloropsis gaditana])

HSP 1 Score: 147.1 bits (370), Expect = 1.000e-31
Identity = 129/291 (44.33%), Postives = 170/291 (58.42%), Query Frame = 0 
Query:   81 SPSRRSMPPPPSLSSPRPPSSSAAHQADVSSPLQTLVEDQAMLSVFWSEWRAAEHKFLCRAEAKHISPEYNHLPAETTPTR----RSSRRRPR--ATTVITDPFS---SSRCASP--GRAATACEENKEGEEEEVEDLESLLLSSMLLFEKGTIFNSSRMQQQHQHQRRHL-----SSLVQQENAVCMTEEDRDAKQAECSGVGGGKKDEGEDVAARGEGATDAGAALARQAAYEAKIQKLEAQMVETEVLLGSDTGTIILGLERELAQTRLELAEMEAAKDDLEVQLVNL 356
            SPSR       S SSPR   SS A      S L +L+E+Q MLS FW +WR AEHKFL ++  +  + +  H   E+TP+R     SS  + R  A   + +      S +  SP  G+  T   E+K  +E   EDLE+ LLSSMLL E+    +SS     H H  R L     SS +  +    +TE+ RDAKQA+  G G G++D+GED        + A AA+AR  AYE +IQ+LEA++VETEVLL SD+GT+I GLER+LAQ RL LA MEA KDDLEVQ++N+
Sbjct:    4 SPSRWRRAAALS-SSPRASPSSEAE-----SSLLSLMEEQVMLSAFWGDWRIAEHKFLFQSTGRRRTDKM-HAVTESTPSRGGGENSSEMQQRLLAYCEVDEALPGRVSPKPTSPQRGKRVTEIVESKRKKE---EDLEAWLLSSMLLHEEEGPEDSSERNGIHWHGPRQLEGQRQSSSLSHQQCHPITEDGRDAKQAQ-DGGGQGEEDKGEDAT-----ESAAAAAVARLRAYEGRIQELEAKLVETEVLLSSDSGTVICGLERDLAQARLALANMEAEKDDLEVQVLNM 278
The following BLAST results are available for this feature:
BLAST of NO05G02440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28132.11.000e-3144.33hypothetical protein Naga_100036g17 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02440NO05G02440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02440.1NO05G02440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02440.1.cds1NO05G02440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02440.1.cds2NO05G02440.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02440.1.cds3NO05G02440.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02440.1 ID=NO05G02440.1|Name=NO05G02440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1649bp
CCGCAATCCAGCAGAAATTTCTGTGAGAGTATGGATATGGGGTATGTTGA
GATCAATCAGGGGCCAGACCAGCAAGGCACTCGCGAAGTATGGCAATAAT
GCGATGCAAAGAGAAGGAGCAAATCAGCAAAAGAACTTCCTTGAAGGAGA
TCGATAGTGACTCTCGAGCATAGTAAGTTGTGTAATCATCTGTGTCCGAA
ACTATTGTTGCGCATCAATATATACCGCCTTGGCTGGCAGCCTGTAAACA
TCCCAAGCCCCATGACCATGCTATCCAACTAGTCGCCCTCTCGCCTTAGC
CGGCCTTAGCCCCCCTTCGCCGACCGAGAAACACAGCAATGAAAAAGTAC
GGGAGAGAGGGCTACCCACAGACACACACATGCGTGCTTACCCGGTCCTG
CCCACCCTCTTGCCTTCATACATCGACAGAGAGACTACCGTACTTCGAGG
CCTGGAATCCTAGCCCTCTTTCCTACTTGCACGCCCTCGCTCCTGCTCCA
AGCTCACGATTCCAACCCCGCCCCCTCATTTCCTCATTACACCTGACAAC
ATTCCCTTTCTCCCGGGAAATTTCCTCCAGCCCTTCGCGCCGGAGTATGC
CGCCTCCACCGTCGCTCTCCTCCCCGCGACCACCATCGTCGTCAGCAGCT
CACCAAGCTGACGTCTCGTCGCCTTTGCAGACGCTGGTGGAGGACCAGGC
CATGCTAAGCGTCTTCTGGAGCGAATGGCGTGCGGCCGAGCACAAGTTTC
TTTGTCGTGCCGAAGCTAAACACATTTCACCCGAATACAATCACTTGCCG
GCCGAGACGACGCCCACAAGAAGAAGCAGCAGAAGGCGCCCACGAGCCAC
GACGGTCATTACTGACCCCTTCTCCTCCTCTCGATGTGCAAGTCCAGGAC
GAGCGGCAACTGCTTGTGAGGAGAACAAAGAAGGAGAGGAGGAAGAGGTG
GAAGACCTGGAATCGTTGTTGCTGTCCTCTATGCTACTTTTCGAGAAGGG
CACCATTTTCAACAGCAGCAGAATGCAGCAACAGCACCAGCACCAAAGAC
GACACCTTTCCTCGCTCGTTCAACAAGAAAATGCTGTCTGTATGACAGAA
GAGGATCGAGACGCCAAGCAAGCCGAATGTAGTGGGGTCGGGGGAGGCAA
AAAAGACGAGGGGGAGGACGTGGCGGCAAGAGGGGAGGGAGCCACTGATG
CTGGTGCCGCACTCGCGAGGCAGGCGGCATACGAAGCGAAGATTCAGAAG
TTGGAGGCCCAGATGGTGGAGACAGAGGTGTTGTTAGGTTCGGACACGGG
GACGATTATATTGGGGTTGGAGCGGGAGCTTGCCCAAACCCGTCTGGAGC
TTGCGGAAATGGAGGCCGCGAAGGACGACTTGGAGGTGCAGCTGGTCAAC
CTGCTTCACAAAACTAGTGAGAAACGGAAGTAGGAAAGCAAGTTAAAAAA
ATGAACCAACGACAGGGGCTGTATTTGTGGTGGAATAAGGAGGAGGGTAG
GGTGGTACGTGTGTCTTCGCGGGGATGCGGAGGGAGGAGGTTTGCCTGAG
GGAGCGGACGCATGCAGTCTTCTAGACCATTTTATTTGTAGCTCTGTGCC
ATAAACTTGCAATTTGAAGAAGAAAATAAGAAAAGGACACATATACACC
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protein sequence of NO05G02440.1

>NO05G02440.1-protein ID=NO05G02440.1-protein|Name=NO05G02440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MKKYGREGYPQTHTCVLTRSCPPSCLHTSTERLPYFEAWNPSPLSYLHAL
APAPSSRFQPRPLISSLHLTTFPFSREISSSPSRRSMPPPPSLSSPRPPS
SSAAHQADVSSPLQTLVEDQAMLSVFWSEWRAAEHKFLCRAEAKHISPEY
NHLPAETTPTRRSSRRRPRATTVITDPFSSSRCASPGRAATACEENKEGE
EEEVEDLESLLLSSMLLFEKGTIFNSSRMQQQHQHQRRHLSSLVQQENAV
CMTEEDRDAKQAECSGVGGGKKDEGEDVAARGEGATDAGAALARQAAYEA
KIQKLEAQMVETEVLLGSDTGTIILGLERELAQTRLELAEMEAAKDDLEV
QLVNLLHKTSEKRK*
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mRNA from alignment at chr5:650022..652063+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02440.1 ID=NO05G02440.1|Name=NO05G02440.1|organism=Nannochloropsis oceanica|type=mRNA|length=2042bp|location=Sequence derived from alignment at chr5:650022..652063+ (Nannochloropsis oceanica)
CCGCAATCCAGCAGAAATTTCTGTGAGAGTATGGATATGGGGTATGTTGA
GATCAATCAGGGGCCAGACCAGCAAGGCACTCGCGAAGTATGGCAATAAT
GCGATGCAAAGAGAAGGAGCAAATCAGCAAAAGAACTTCCTTGAAGGAGA
TCGATAGTGACTCTCGAGCATAGTAAGTTGTGTAATCATCTGTGTCCGAA
ACTATTGTTGCGCATCAATATATACCGCCTTGGCTGGCAGCCTGTAAACA
TCCCAAGCCCCATGACCATGCTATCCAACTAGTCGCCCTCTCGCCTTAGC
CGGCCTTAGCCCCCCTTCGCCGACCGAGAAACACAGCAATGAAAAAGTAC
GGGAGAGAGGGCTACCCACAGACACACACATGCGTGCTTACCCGGTCCTG
CCCACCCTCTTGCCTTCATACATCGACAGAGAGACTACCGTACTTCGAGG
CCTGGAATCCTAGCCCTCTTTCCTACTTGCACGCCCTCGCTCCTGCTCCA
AGCTCACGATTCCAACCCCGCCCCCTCATTTCCTCATTACACCTGACAAC
ATTCCCTTTCTCCCGGGAAATTTCCTCCAGCCCTTCGCGCCGGAGTATGC
CGCCTCCACCGTCGCTCTCCTCCCCGCGACCACCATCGTCGTCAGCAGCT
CACCAAGCTGACGTCTCGTCGCCTTTGCAGACGCTGGTGGAGGACCAGGC
CATGCTAAGCGTCTTCTGGAGCGAATGGCGTGCGGCCGAGCACAAGTTTC
TTTGTCGTGCCGAAGGTATGTCACGGGGGAGGAAGTCTACCGGTTTTTGA
TGTGAGAGGGAGAGGGAGGGGAGTATGCGTCTGGATGTGTGCTTGCACGC
ATGAGGGGAAAAGAGGGATGGTGCCCTGAATAAGGCCACGAGTTGCTGCA
TAGCGGAAGAGTGGAAAACAGCGTGCTTCTTAGGCTAGTCTATTAATTTC
TCACTTGTACTCATAATCCTGGAAATCTACTTCTTTCGCATCCTCAACAG
CTAAACACATTTCACCCGAATACAATCACTTGCCGGCCGAGACGACGCCC
ACAAGAAGAAGCAGCAGAAGGCGCCCACGAGCCACGACGGTCATTACTGA
CCCCTTCTCCTCCTCTCGATGTGCAAGTCCAGGACGAGCGGCAACTGCTT
GTGAGGAGAACAAAGAAGGAGAGGAGGAAGAGGTGGAAGACCTGGAATCG
TTGTTGCTGTCCTCTATGCTACTTTTCGAGAAGGGCACCATTTTCAACAG
CAGCAGAATGCAGCAACAGCACCAGCACCAAAGACGACACCTTTCCTCGC
TCGTTCAACAAGAAAATGCTGTCTGTATGACAGAAGAGGATCGAGACGCC
AAGCAAGCCGAATGTAGTGGGGTCGGGGGAGGCAAAAAAGACGAGGGGGA
GGACGTGGCGGCAAGAGGGGAGGGAGCCACTGATGCTGGTGCCGCACTCG
CGAGGCAGGCGGCATACGAAGCGAAGATTCAGAAGTTGGAGGCCCAGATG
GTGGAGACAGAGGTGTTGTTAGGTTCGGACACGGGGACGATTATATTGGG
GTTGGAGGTGAGTGAAAGGCGTGGATAGGAGTGGGGAGAGGGATGGGGTG
GGAGGGCGATGGAGTTTTCTTGGTAATTTTTGAAAAGGAATTGAACTCGC
GATCCACTGGGGGCGTTTTACTTCAAACGGCTGCTTACAGATACACCACA
CGTAACTTCTTACAGCGGGAGCTTGCCCAAACCCGTCTGGAGCTTGCGGA
AATGGAGGCCGCGAAGGACGACTTGGAGGTGCAGCTGGTCAACCTGCTTC
ACAAAACTAGTGAGAAACGGAAGTAGGAAAGCAAGTTAAAAAAATGAACC
AACGACAGGGGCTGTATTTGTGGTGGAATAAGGAGGAGGGTAGGGTGGTA
CGTGTGTCTTCGCGGGGATGCGGAGGGAGGAGGTTTGCCTGAGGGAGCGG
ACGCATGCAGTCTTCTAGACCATTTTATTTGTAGCTCTGTGCCATAAACT
TGCAATTTGAAGAAGAAAATAAGAAAAGGACACATATACACC
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Coding sequence (CDS) from alignment at chr5:650022..652063+

>NO05G02440.1 ID=NO05G02440.1|Name=NO05G02440.1|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at chr5:650022..652063+ (Nannochloropsis oceanica)
ATGAAAAAGTACGGGAGAGAGGGCTACCCACAGACACACACATGCGTGCT
TACCCGGTCCTGCCCACCCTCTTGCCTTCATACATCGACAGAGAGACTAC
CGTACTTCGAGGCCTGGAATCCTAGCCCTCTTTCCTACTTGCACGCCCTC
GCTCCTGCTCCAAGCTCACGATTCCAACCCCGCCCCCTCATTTCCTCATT
ACACCTGACAACATTCCCTTTCTCCCGGGAAATTTCCTCCAGCCCTTCGC
GCCGGAGTATGCCGCCTCCACCGTCGCTCTCCTCCCCGCGACCACCATCG
TCGTCAGCAGCTCACCAAGCTGACGTCTCGTCGCCTTTGCAGACGCTGGT
GGAGGACCAGGCCATGCTAAGCGTCTTCTGGAGCGAATGGCGTGCGGCCG
AGCACAAGTTTCTTTGTCGTGCCGAAGCTAAACACATTTCACCCGAATAC
AATCACTTGCCGGCCGAGACGACGCCCACAAGAAGAAGCAGCAGAAGGCG
CCCACGAGCCACGACGGTCATTACTGACCCCTTCTCCTCCTCTCGATGTG
CAAGTCCAGGACGAGCGGCAACTGCTTGTGAGGAGAACAAAGAAGGAGAG
GAGGAAGAGGTGGAAGACCTGGAATCGTTGTTGCTGTCCTCTATGCTACT
TTTCGAGAAGGGCACCATTTTCAACAGCAGCAGAATGCAGCAACAGCACC
AGCACCAAAGACGACACCTTTCCTCGCTCGTTCAACAAGAAAATGCTGTC
TGTATGACAGAAGAGGATCGAGACGCCAAGCAAGCCGAATGTAGTGGGGT
CGGGGGAGGCAAAAAAGACGAGGGGGAGGACGTGGCGGCAAGAGGGGAGG
GAGCCACTGATGCTGGTGCCGCACTCGCGAGGCAGGCGGCATACGAAGCG
AAGATTCAGAAGTTGGAGGCCCAGATGGTGGAGACAGAGGTGTTGTTAGG
TTCGGACACGGGGACGATTATATTGGGGTTGGAGCGGGAGCTTGCCCAAA
CCCGTCTGGAGCTTGCGGAAATGGAGGCCGCGAAGGACGACTTGGAGGTG
CAGCTGGTCAACCTGCTTCACAAAACTAGTGAGAAACGGAAGTAG
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Synonyms
Publications