NO05G01900, NO05G01900 (gene) Nannochloropsis oceanica

Overview
NameNO05G01900
Unique NameNO05G01900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1845
Alignment locationchr5:520603..522447 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:520603..522447 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO05G01900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01900.1NO05G01900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G01900.2NO05G01900.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G01900.3NO05G01900.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G01900.4NO05G01900.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625195gene_2981Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01900.1NO05G01900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G01900.2NO05G01900.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G01900.3NO05G01900.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G01900.4NO05G01900.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01900 ID=NO05G01900|Name=NO05G01900|organism=Nannochloropsis oceanica|type=gene|length=1845bp
ATAGCGATGCACCATCGACGTCCACCAGCCACATTTGTGACCTCAATTCC
GCTCATGACCGCCACCAAGACTCCCCATCTTCTTGTCTCGGACTCAGAGA
CGCCTAATCAGCGCTCCGAGGGGGAGGACCAGCCTGAATGCCGGCATGAC
GGCACCGAGGAAATAAAGCGCTGGCATCGGATACAGAAGAAGGTAAGGAC
ATCAGGTTCATCACTGCTTTGTATGTTATTGAAGCTCCTCATGCTTGTCT
CACTCCGACAGGCCCATGCGCAGCAACCCACTGCCGGCTCCACTACCTGC
AGCAACAGCGGCACCAGCGGTGGCACTAGCAGCGACAGCGAAGACTCCGA
TGGAATGAATCCTCAGCACCTGACGCTGTCCCGCTCATCCTTAATGGCTC
AGTGGGGTGAGGCCTCCAGCGGGAAAGCTGCCGTGAACGTCGTCAAGGAG
CTAGTCGAGGAGCGAAGAGACGACTCGCAATCCAAGTATCAGCCTCAAAC
CGATAACGTAATAAACAAGGCACGGGATTTGTGTGCCCGCATTCGCCACC
AAGCTAAAGTCAAGCAACGGGAAGAGCGTAAGCACATTTTGTTGCAACGg
tacgtcggtatggactgcccaggctcctttccttgtttattctccacctt
ccaatgttggcactctgaacgaccttccctcttatttctaccatttcctt
gttccccgtcattcacaaacctacgtacggatcagACAAAAAGCTCGTGA
CTTGGCTCGGCAGGCGGCGGAGACTGCTCGAGATGAAGGGACCCGGAATG
CAGCCTTGCGGATACACGCACAGAAAGAGGTGACCGAGGCAGCGCGTCGG
GAACGAGTGTTGGCAGGAGAGCACGGGTACGAGGACAAGTCTGAATGCTT
CATTGCCCGCAATAATTACTACGGACAAAGGACGCTGTCGGCCAGGCGAA
AAGACTCTCTCGCCTGCAAACGGGACCAAGAGCGGTTTCAGGCAGCCAAA
TCCCAGATCGACATGTTTTACGCCACGACTCTCTCCGCCCGTGAAGCGCG
TCATCAGCGGCAAGCGTCTGTGCAGCAGGCCAAGGCTTCCCACCGGGAAG
AAGAGGATAAAGTAGTACGTTTGATTCAAGCGGCCAAGATGGAGCGGCTG
CGGGCAGGGGTCCTTAAGGTATGCTTCTTACGGGCAATATAGTGGGGAAA
GAACAAATAGAGGAGAGAAGGGCAACTCTTCTCAACTTCAACATTGAATG
ACACCGACCAGAGCTGGTCGTACACGAGGTAGTCGAGTGAACACGCGCGA
TACCCATCCAGTAAAGAATATTCTTACGCCCTATTTCACACACAAATACA
CAAAAACAGTGGGATCGATGGGTGAAGCAGCGAGCCATCTTTATTTGGTA
CGTCAAGGCCCAACACATGAGAAAGCTTCAGCATCAGCACCAGCATCAGC
ACCAGCAGCGGCAGAAAAAGAAACAGCAGCAGGAAGAAGCTGAAACGAAG
GCGCGTGTCGCTGCTGCTGGTGCCGCATTAGCTCTTTCTTTCTTTTCCTT
TGCTGACTGGGCCGTGAATGCAGGAAAATGGTTCAAATGGCAGGTAGACA
ACGCTTGCGCTCCCCCTCGTCGCCCCAAAAGCCCGTCCCATTACCTAGAT
GAGTGCTAGGTGTGACCATATATTTATTCTATGTACGTGCGTGTAAAACT
GAAGGAACGGAGTGAATCGAGAGAGGAACGGACCAGAGTGTGCTACTGAA
GGCCTTCACACGCTATTGGATAATAGATCAGCAAATGCTCCATATTCATG
GCGTCAAACAGAAAAAGAAATGAAAGTAATCGGATTACTGGATAC
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protein sequence of NO05G01900.1

>NO05G01900.1-protein ID=NO05G01900.1-protein|Name=NO05G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MHHRRPPATFVTSIPLMTATKTPHLLVSDSETPNQRSEGEDQPECRHDGT
EEIKRWHRIQKKAHAQQPTAGSTTCSNSGTSGGTSSDSEDSDGMNPQHLT
LSRSSLMAQWGEASSGKAAVNVVKELVEERRDDSQSKYQPQTDNVINKAR
DLCARIRHQAKVKQREERKHILLQRQKARDLARQAAETARDEGTRNAALR
IHAQKEVTEAARRERVLAGEHGYEDKSECFIARNNYYGQRTLSARRKDSL
ACKRDQERFQAAKSQIDMFYATTLSAREARHQRQASVQQAKASHREEEDK
VVRLIQAAKMERLRAGVLKWDRWVKQRAIFIWYVKAQHMRKLQHQHQHQH
QQRQKKKQQQEEAETKARVAAAGAALALSFFSFADWAVNAGKWFKWQVDN
ACAPPRRPKSPSHYLDEC*
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protein sequence of NO05G01900.2

>NO05G01900.2-protein ID=NO05G01900.2-protein|Name=NO05G01900.2|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MHHRRPPATFVTSIPLMTATKTPHLLVSDSETPNQRSEGEDQPECRHDGT
EEIKRWHRIQKKAHAQQPTAGSTTCSNSGTSGGTSSDSEDSDGMNPQHLT
LSRSSLMAQWGEASSGKAAVNVVKELVEERRDDSQSKYQPQTDNVINKAR
DLCARIRHQAKVKQREERKHILLQRQKARDLARQAAETARDEGTRNAALR
IHAQKEVTEAARRERVLAGEHGYEDKSECFIARNNYYGQRTLSARRKDSL
ACKRDQERFQAAKSQIDMFYATTLSAREARHQRQASVQQAKASHREEEDK
VVRLIQAAKMERLRAGVLKVCFLRAI*
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protein sequence of NO05G01900.3

>NO05G01900.3-protein ID=NO05G01900.3-protein|Name=NO05G01900.3|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp
MHHRRPPATFVTSIPLMTATKTPHLLVSDSETPNQRSEGEDQPECRHDGT
EEIKRWHRIQKKVRTSGSSLLCMLLKLLMLVSLRQAHAQQPTAGSTTCSN
SGTSGGTSSDSEDSDGMNPQHLTLSRSSLMAQWGEASSGKAAVNVVKELV
EERRDDSQSKYQPQTDNVINKARDLCARIRHQAKVKQREERKHILLQRQK
ARDLARQAAETARDEGTRNAALRIHAQKEVTEAARRERVLAGEHGYEDKS
ECFIARNNYYGQRTLSARRKDSLACKRDQERFQAAKSQIDMFYATTLSAR
EARHQRQASVQQAKASHREEEDKVVRLIQAAKMERLRAGVLKWDRWVKQR
AIFIWYVKAQHMRKLQHQHQHQHQQRQKKKQQQEEAETKARVAAAGAALA
LSFFSFADWAVNAGKWFKWQVDNACAPPRRPKSPSHYLDEC*
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protein sequence of NO05G01900.4

>NO05G01900.4-protein ID=NO05G01900.4-protein|Name=NO05G01900.4|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MHHRRPPATFVTSIPLMTATKTPHLLVSDSETPNQRSEGEDQPECRHDGT
EEIKRWHRIQKKVRTSGSSLLCMLLKLLMLVSLRQAHAQQPTAGSTTCSN
SGTSGGTSSDSEDSDGMNPQHLTLSRSSLMAQWGEASSGKAAVNVVKELV
EERRDDSQSKYQPQTDNVINKARDLCARIRHQAKVKQREERKHILLQRQK
ARDLARQAAETARDEGTRNAALRIHAQKEVTEAARRERVLAGEHGYEDKS
ECFIARNNYYGQRTLSARRKDSLACKRDQERFQAAKSQIDMFYATTLSAR
EARHQRQASVQQAKASHREEEDKVVRLIQAAKMERLRAGVLKVCFLRAI*
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Synonyms
Publications