NO05G01900.2, NO05G01900.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01900.2
Unique NameNO05G01900.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1640
Alignment locationchr5:520603..522447 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:520603..522447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO05G01900.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01900NO05G01900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01900.2NO05G01900.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01900.2.cds1NO05G01900.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01900.2.cds2NO05G01900.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01900.2.cds3NO05G01900.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01900.2 ID=NO05G01900.2|Name=NO05G01900.2|organism=Nannochloropsis oceanica|type=mRNA|length=1640bp
ATAGCGATGCACCATCGACGTCCACCAGCCACATTTGTGACCTCAATTCC
GCTCATGACCGCCACCAAGACTCCCCATCTTCTTGTCTCGGACTCAGAGA
CGCCTAATCAGCGCTCCGAGGGGGAGGACCAGCCTGAATGCCGGCATGAC
GGCACCGAGGAAATAAAGCGCTGGCATCGGATACAGAAGAAGGCCCATGC
GCAGCAACCCACTGCCGGCTCCACTACCTGCAGCAACAGCGGCACCAGCG
GTGGCACTAGCAGCGACAGCGAAGACTCCGATGGAATGAATCCTCAGCAC
CTGACGCTGTCCCGCTCATCCTTAATGGCTCAGTGGGGTGAGGCCTCCAG
CGGGAAAGCTGCCGTGAACGTCGTCAAGGAGCTAGTCGAGGAGCGAAGAG
ACGACTCGCAATCCAAGTATCAGCCTCAAACCGATAACGTAATAAACAAG
GCACGGGATTTGTGTGCCCGCATTCGCCACCAAGCTAAAGTCAAGCAACG
GGAAGAGCGTAAGCACATTTTGTTGCAACGACAAAAAGCTCGTGACTTGG
CTCGGCAGGCGGCGGAGACTGCTCGAGATGAAGGGACCCGGAATGCAGCC
TTGCGGATACACGCACAGAAAGAGGTGACCGAGGCAGCGCGTCGGGAACG
AGTGTTGGCAGGAGAGCACGGGTACGAGGACAAGTCTGAATGCTTCATTG
CCCGCAATAATTACTACGGACAAAGGACGCTGTCGGCCAGGCGAAAAGAC
TCTCTCGCCTGCAAACGGGACCAAGAGCGGTTTCAGGCAGCCAAATCCCA
GATCGACATGTTTTACGCCACGACTCTCTCCGCCCGTGAAGCGCGTCATC
AGCGGCAAGCGTCTGTGCAGCAGGCCAAGGCTTCCCACCGGGAAGAAGAG
GATAAAGTAGTACGTTTGATTCAAGCGGCCAAGATGGAGCGGCTGCGGGC
AGGGGTCCTTAAGGTATGCTTCTTACGGGCAATATAGTGGGGAAAGAACA
AATAGAGGAGAGAAGGGCAACTCTTCTCAACTTCAACATTGAATGACACC
GACCAGAGCTGGTCGTACACGAGGTAGTCGAGTGAACACGCGCGATACCC
ATCCAGTAAAGAATATTCTTACGCCCTATTTCACACACAAATACACAAAA
ACAGTGGGATCGATGGGTGAAGCAGCGAGCCATCTTTATTTGGTACGTCA
AGGCCCAACACATGAGAAAGCTTCAGCATCAGCACCAGCATCAGCACCAG
CAGCGGCAGAAAAAGAAACAGCAGCAGGAAGAAGCTGAAACGAAGGCGCG
TGTCGCTGCTGCTGGTGCCGCATTAGCTCTTTCTTTCTTTTCCTTTGCTG
ACTGGGCCGTGAATGCAGGAAAATGGTTCAAATGGCAGGTAGACAACGCT
TGCGCTCCCCCTCGTCGCCCCAAAAGCCCGTCCCATTACCTAGATGAGTG
CTAGGTGTGACCATATATTTATTCTATGTACGTGCGTGTAAAACTGAAGG
AACGGAGTGAATCGAGAGAGGAACGGACCAGAGTGTGCTACTGAAGGCCT
TCACACGCTATTGGATAATAGATCAGCAAATGCTCCATATTCATGGCGTC
AAACAGAAAAAGAAATGAAAGTAATCGGATTACTGGATAC
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protein sequence of NO05G01900.2

>NO05G01900.2-protein ID=NO05G01900.2-protein|Name=NO05G01900.2|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MHHRRPPATFVTSIPLMTATKTPHLLVSDSETPNQRSEGEDQPECRHDGT
EEIKRWHRIQKKAHAQQPTAGSTTCSNSGTSGGTSSDSEDSDGMNPQHLT
LSRSSLMAQWGEASSGKAAVNVVKELVEERRDDSQSKYQPQTDNVINKAR
DLCARIRHQAKVKQREERKHILLQRQKARDLARQAAETARDEGTRNAALR
IHAQKEVTEAARRERVLAGEHGYEDKSECFIARNNYYGQRTLSARRKDSL
ACKRDQERFQAAKSQIDMFYATTLSAREARHQRQASVQQAKASHREEEDK
VVRLIQAAKMERLRAGVLKVCFLRAI*
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mRNA from alignment at chr5:520603..522447+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01900.2 ID=NO05G01900.2|Name=NO05G01900.2|organism=Nannochloropsis oceanica|type=mRNA|length=1845bp|location=Sequence derived from alignment at chr5:520603..522447+ (Nannochloropsis oceanica)
ATAGCGATGCACCATCGACGTCCACCAGCCACATTTGTGACCTCAATTCC
GCTCATGACCGCCACCAAGACTCCCCATCTTCTTGTCTCGGACTCAGAGA
CGCCTAATCAGCGCTCCGAGGGGGAGGACCAGCCTGAATGCCGGCATGAC
GGCACCGAGGAAATAAAGCGCTGGCATCGGATACAGAAGAAGGTAAGGAC
ATCAGGTTCATCACTGCTTTGTATGTTATTGAAGCTCCTCATGCTTGTCT
CACTCCGACAGGCCCATGCGCAGCAACCCACTGCCGGCTCCACTACCTGC
AGCAACAGCGGCACCAGCGGTGGCACTAGCAGCGACAGCGAAGACTCCGA
TGGAATGAATCCTCAGCACCTGACGCTGTCCCGCTCATCCTTAATGGCTC
AGTGGGGTGAGGCCTCCAGCGGGAAAGCTGCCGTGAACGTCGTCAAGGAG
CTAGTCGAGGAGCGAAGAGACGACTCGCAATCCAAGTATCAGCCTCAAAC
CGATAACGTAATAAACAAGGCACGGGATTTGTGTGCCCGCATTCGCCACC
AAGCTAAAGTCAAGCAACGGGAAGAGCGTAAGCACATTTTGTTGCAACGG
TACGTCGGTATGGACTGCCCAGGCTCCTTTCCTTGTTTATTCTCCACCTT
CCAATGTTGGCACTCTGAACGACCTTCCCTCTTATTTCTACCATTTCCTT
GTTCCCCGTCATTCACAAACCTACGTACGGATCAGACAAAAAGCTCGTGA
CTTGGCTCGGCAGGCGGCGGAGACTGCTCGAGATGAAGGGACCCGGAATG
CAGCCTTGCGGATACACGCACAGAAAGAGGTGACCGAGGCAGCGCGTCGG
GAACGAGTGTTGGCAGGAGAGCACGGGTACGAGGACAAGTCTGAATGCTT
CATTGCCCGCAATAATTACTACGGACAAAGGACGCTGTCGGCCAGGCGAA
AAGACTCTCTCGCCTGCAAACGGGACCAAGAGCGGTTTCAGGCAGCCAAA
TCCCAGATCGACATGTTTTACGCCACGACTCTCTCCGCCCGTGAAGCGCG
TCATCAGCGGCAAGCGTCTGTGCAGCAGGCCAAGGCTTCCCACCGGGAAG
AAGAGGATAAAGTAGTACGTTTGATTCAAGCGGCCAAGATGGAGCGGCTG
CGGGCAGGGGTCCTTAAGGTATGCTTCTTACGGGCAATATAGTGGGGAAA
GAACAAATAGAGGAGAGAAGGGCAACTCTTCTCAACTTCAACATTGAATG
ACACCGACCAGAGCTGGTCGTACACGAGGTAGTCGAGTGAACACGCGCGA
TACCCATCCAGTAAAGAATATTCTTACGCCCTATTTCACACACAAATACA
CAAAAACAGTGGGATCGATGGGTGAAGCAGCGAGCCATCTTTATTTGGTA
CGTCAAGGCCCAACACATGAGAAAGCTTCAGCATCAGCACCAGCATCAGC
ACCAGCAGCGGCAGAAAAAGAAACAGCAGCAGGAAGAAGCTGAAACGAAG
GCGCGTGTCGCTGCTGCTGGTGCCGCATTAGCTCTTTCTTTCTTTTCCTT
TGCTGACTGGGCCGTGAATGCAGGAAAATGGTTCAAATGGCAGGTAGACA
ACGCTTGCGCTCCCCCTCGTCGCCCCAAAAGCCCGTCCCATTACCTAGAT
GAGTGCTAGGTGTGACCATATATTTATTCTATGTACGTGCGTGTAAAACT
GAAGGAACGGAGTGAATCGAGAGAGGAACGGACCAGAGTGTGCTACTGAA
GGCCTTCACACGCTATTGGATAATAGATCAGCAAATGCTCCATATTCATG
GCGTCAAACAGAAAAAGAAATGAAAGTAATCGGATTACTGGATAC
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Coding sequence (CDS) from alignment at chr5:520603..522447+

>NO05G01900.2 ID=NO05G01900.2|Name=NO05G01900.2|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at chr5:520603..522447+ (Nannochloropsis oceanica)
ATGCACCATCGACGTCCACCAGCCACATTTGTGACCTCAATTCCGCTCAT
GACCGCCACCAAGACTCCCCATCTTCTTGTCTCGGACTCAGAGACGCCTA
ATCAGCGCTCCGAGGGGGAGGACCAGCCTGAATGCCGGCATGACGGCACC
GAGGAAATAAAGCGCTGGCATCGGATACAGAAGAAGGCCCATGCGCAGCA
ACCCACTGCCGGCTCCACTACCTGCAGCAACAGCGGCACCAGCGGTGGCA
CTAGCAGCGACAGCGAAGACTCCGATGGAATGAATCCTCAGCACCTGACG
CTGTCCCGCTCATCCTTAATGGCTCAGTGGGGTGAGGCCTCCAGCGGGAA
AGCTGCCGTGAACGTCGTCAAGGAGCTAGTCGAGGAGCGAAGAGACGACT
CGCAATCCAAGTATCAGCCTCAAACCGATAACGTAATAAACAAGGCACGG
GATTTGTGTGCCCGCATTCGCCACCAAGCTAAAGTCAAGCAACGGGAAGA
GCGTAAGCACATTTTGTTGCAACGACAAAAAGCTCGTGACTTGGCTCGGC
AGGCGGCGGAGACTGCTCGAGATGAAGGGACCCGGAATGCAGCCTTGCGG
ATACACGCACAGAAAGAGGTGACCGAGGCAGCGCGTCGGGAACGAGTGTT
GGCAGGAGAGCACGGGTACGAGGACAAGTCTGAATGCTTCATTGCCCGCA
ATAATTACTACGGACAAAGGACGCTGTCGGCCAGGCGAAAAGACTCTCTC
GCCTGCAAACGGGACCAAGAGCGGTTTCAGGCAGCCAAATCCCAGATCGA
CATGTTTTACGCCACGACTCTCTCCGCCCGTGAAGCGCGTCATCAGCGGC
AAGCGTCTGTGCAGCAGGCCAAGGCTTCCCACCGGGAAGAAGAGGATAAA
GTAGTACGTTTGATTCAAGCGGCCAAGATGGAGCGGCTGCGGGCAGGGGT
CCTTAAGGTATGCTTCTTACGGGCAATATAG
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Synonyms
Publications