NO05G01430, NO05G01430 (gene) Nannochloropsis oceanica

Overview
NameNO05G01430
Unique NameNO05G01430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length521
Alignment locationchr5:403581..404101 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:403581..404101 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO05G01430 vs. NCBI_GenBank
Match: EWM28165.1 (protein of unknown function DUF4341 [Nannochloropsis gaditana])

HSP 1 Score: 96.7 bits (239), Expect = 5.800e-17
Identity = 51/73 (69.86%), Postives = 62/73 (84.93%), Query Frame = 0 
Query:    2 SSSFPDFTPGTALCGGALIAMSALLYLVVAGRRAGISGIFSTGLLSLLSLRPLDPLSTTFLSAFFLAALAAPL 75
            S ++P FTP +A CGG+LIA SALL+LVVAG+R GISG+ S GLLS L L+PLDPL+T+FLSAF +AALAAPL
Sbjct:    7 SLTYPQFTPWSAFCGGSLIAASALLFLVVAGKRVGISGLISAGLLSSLRLQPLDPLATSFLSAFLVAALAAPL 79
The following BLAST results are available for this feature:
BLAST of NO05G01430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28165.15.800e-1769.86protein of unknown function DUF4341 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01430.1NO05G01430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01430.1NO05G01430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01430 ID=NO05G01430|Name=NO05G01430|organism=Nannochloropsis oceanica|type=gene|length=521bp
ATGTCCTCCTCCTTCCCTGATTTCACGCCGGGGACTGCCCTATGCGGAGG
TGCACTGATCGCTATGTCGGCGCTGCTGTACCTGGTCGTGGCTGGAAGAC
GTGCAGGCATTTCAGgttcgtgcaaaatctaagggaatggaagatctccc
ggtgtgcacggaagttttgacacacgagatgtcagcatacacatttttac
tctcgccttttcacccccctttccctttcctccccaccaaccacagGCAT
ATTTTCCACCGGCCTCCTCTCCCTCCTCTCCCTTCGACCTCTTGACCCCC
TCTCCACCACATTCCTCTCTGCCTTCTTCCTCGCCGCACTCGCTGCCCCC
CTCTTCCTCCCTTCCTCCCCCCCTCCTCCTCTTTCTCCTTCCCTCCCGCT
GCCTACCTCATCAGCGGCCTCCTGGTCGGGTTCGGGACCCGCCTCGGAAA
CGGCTGTACCTCCGGCCATGGTGTATGTGGCTTGTCCCGCCTTTCCAAAC
GAGGAGCGGTCGCCGTCCTGA
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protein sequence of NO05G01430.1

>NO05G01430.1-protein ID=NO05G01430.1-protein|Name=NO05G01430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MSSSFPDFTPGTALCGGALIAMSALLYLVVAGRRAGISGIFSTGLLSLLS
LRPLDPLSTTFLSAFFLAALAAPLFLPSSPPPPLSPSLPLPTSSAASWSG
SGPASETAVPPAMVYVACPAFPNEERSPS*
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Synonyms
Publications