NO05G01430.1, NO05G01430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01430.1
Unique NameNO05G01430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length390
Alignment locationchr5:403581..404101 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:403581..404101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01430.1 vs.
Match: EWM28165.1 (protein of unknown function DUF4341 [Nannochloropsis gaditana])

HSP 1 Score: 100.9 bits (250), Expect = 3.100e-18
Identity = 56/85 (65.88%), Postives = 67/85 (78.82%), Query Frame = 0 
Query:    2 SSSFPDFTPGTALCGGALIAMSALLYLVVAGRRAGISGIFSTGLLSLLSLRPLDPLSTTFLSAFFLAALAAPLFLPSSPPPPLSP 87
            S ++P FTP +A CGG+LIA SALL+LVVAG+R GISG+ S GLLS L L+PLDPL+T+FLSAF +AALAAPL     PPP L P
Sbjct:    7 SLTYPQFTPWSAFCGGSLIAASALLFLVVAGKRVGISGLISAGLLSSLRLQPLDPLATSFLSAFLVAALAAPLVFNPPPPPLLLP 91
The following BLAST results are available for this feature:
BLAST of NO05G01430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28165.13.100e-1865.88protein of unknown function DUF4341 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01430NO05G01430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01430.1NO05G01430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01430.1.cds1NO05G01430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01430.1.cds2NO05G01430.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01430.1 ID=NO05G01430.1|Name=NO05G01430.1|organism=Nannochloropsis oceanica|type=mRNA|length=390bp
ATGTCCTCCTCCTTCCCTGATTTCACGCCGGGGACTGCCCTATGCGGAGG
TGCACTGATCGCTATGTCGGCGCTGCTGTACCTGGTCGTGGCTGGAAGAC
GTGCAGGCATTTCAGGCATATTTTCCACCGGCCTCCTCTCCCTCCTCTCC
CTTCGACCTCTTGACCCCCTCTCCACCACATTCCTCTCTGCCTTCTTCCT
CGCCGCACTCGCTGCCCCCCTCTTCCTCCCTTCCTCCCCCCCTCCTCCTC
TTTCTCCTTCCCTCCCGCTGCCTACCTCATCAGCGGCCTCCTGGTCGGGT
TCGGGACCCGCCTCGGAAACGGCTGTACCTCCGGCCATGGTGTATGTGGC
TTGTCCCGCCTTTCCAAACGAGGAGCGGTCGCCGTCCTGA
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protein sequence of NO05G01430.1

>NO05G01430.1-protein ID=NO05G01430.1-protein|Name=NO05G01430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MSSSFPDFTPGTALCGGALIAMSALLYLVVAGRRAGISGIFSTGLLSLLS
LRPLDPLSTTFLSAFFLAALAAPLFLPSSPPPPLSPSLPLPTSSAASWSG
SGPASETAVPPAMVYVACPAFPNEERSPS*
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mRNA from alignment at chr5:403581..404101-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01430.1 ID=NO05G01430.1|Name=NO05G01430.1|organism=Nannochloropsis oceanica|type=mRNA|length=521bp|location=Sequence derived from alignment at chr5:403581..404101- (Nannochloropsis oceanica)
ATGTCCTCCTCCTTCCCTGATTTCACGCCGGGGACTGCCCTATGCGGAGG
TGCACTGATCGCTATGTCGGCGCTGCTGTACCTGGTCGTGGCTGGAAGAC
GTGCAGGCATTTCAGGTTCGTGCAAAATCTAAGGGAATGGAAGATCTCCC
GGTGTGCACGGAAGTTTTGACACACGAGATGTCAGCATACACATTTTTAC
TCTCGCCTTTTCACCCCCCTTTCCCTTTCCTCCCCACCAACCACAGGCAT
ATTTTCCACCGGCCTCCTCTCCCTCCTCTCCCTTCGACCTCTTGACCCCC
TCTCCACCACATTCCTCTCTGCCTTCTTCCTCGCCGCACTCGCTGCCCCC
CTCTTCCTCCCTTCCTCCCCCCCTCCTCCTCTTTCTCCTTCCCTCCCGCT
GCCTACCTCATCAGCGGCCTCCTGGTCGGGTTCGGGACCCGCCTCGGAAA
CGGCTGTACCTCCGGCCATGGTGTATGTGGCTTGTCCCGCCTTTCCAAAC
GAGGAGCGGTCGCCGTCCTGA
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Coding sequence (CDS) from alignment at chr5:403581..404101-

>NO05G01430.1 ID=NO05G01430.1|Name=NO05G01430.1|organism=Nannochloropsis oceanica|type=CDS|length=390bp|location=Sequence derived from alignment at chr5:403581..404101- (Nannochloropsis oceanica)
ATGTCCTCCTCCTTCCCTGATTTCACGCCGGGGACTGCCCTATGCGGAGG
TGCACTGATCGCTATGTCGGCGCTGCTGTACCTGGTCGTGGCTGGAAGAC
GTGCAGGCATTTCAGGCATATTTTCCACCGGCCTCCTCTCCCTCCTCTCC
CTTCGACCTCTTGACCCCCTCTCCACCACATTCCTCTCTGCCTTCTTCCT
CGCCGCACTCGCTGCCCCCCTCTTCCTCCCTTCCTCCCCCCCTCCTCCTC
TTTCTCCTTCCCTCCCGCTGCCTACCTCATCAGCGGCCTCCTGGTCGGGT
TCGGGACCCGCCTCGGAAACGGCTGTACCTCCGGCCATGGTGTATGTGGC
TTGTCCCGCCTTTCCAAACGAGGAGCGGTCGCCGTCCTGA
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Synonyms
Publications