NO05G01380, NO05G01380 (gene) Nannochloropsis oceanica

Overview
NameNO05G01380
Unique NameNO05G01380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length934
Alignment locationchr5:393273..394206 -

Link to JBrowse

Properties
Property NameValue
DescriptionBrefeldin a-inhibited guanine nucleotide-exchange
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:393273..394206 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G01380 vs. NCBI_GenBank
Match: EWM28249.1 (brefeldin a-inhibited guanine nucleotide-exchange [Nannochloropsis gaditana])

HSP 1 Score: 147.5 bits (371), Expect = 4.700e-32
Identity = 85/166 (51.20%), Postives = 105/166 (63.25%), Query Frame = 0 
Query:   24 PSSLRLQDVELEAQFCDGLRVLHNLLR-KSATILTSTTNSPRLFPTPRSPVH---HVVGEGVGGAEEAEWGASMVDDETLASAVGLFLQYQEGDYSHRDHPPNLAFVLGGGRGPGGEEENRRSSSRLSCIMALAQEAWKANAGLSQTAAMTKFLVALETVIPGWRD 186
            PSSLRLQDVELEA FCDGLR L+  +R K ++     +   R FP  RSP         +G  GA   +  +  +DD+ LA+AVGLFLQY+EGDY H D PP LA +       G   E  R SSR S ++ALA +AWKANAGLSQTAAMT+FL  L+  +PGW+D
Sbjct: 2051 PSSLRLQDVELEALFCDGLRALNERVRDKLSSDGKDDSTDRRAFPLARSPSFGNGKSKSDGGLGAGREKTASPSLDDQALATAVGLFLQYREGDYGHHDQPPTLAAL--AALEMGNRTEGARKSSRRSPVVALALKAWKANAGLSQTAAMTRFLEVLDEAMPGWKD 2214
The following BLAST results are available for this feature:
BLAST of NO05G01380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28249.14.700e-3251.20brefeldin a-inhibited guanine nucleotide-exchange ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003732NSK003732Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01380.1NO05G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100004g62gene2321Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01380.1NO05G01380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01380 ID=NO05G01380|Name=NO05G01380|organism=Nannochloropsis oceanica|type=gene|length=934bp
ATGGTGGGAGGGAGGTCGAGGGGGGGTGGGAATACATTATCCGCATCTCC
GTCCAATGTGTCCGAGACTCCTTCCTCCTTGCGGTTGCAAGACGTGGAGC
TAGAGGCCCAATTCTGTGACGGGCTCCGGGTGCTGCACAATTTGTTGCGG
AAGAGCGCCACAATCCTCACCAGTACCACGAATAGCCCTCGTCTCTTTCC
TACCCCCAGATCCCCTGTGCATCACGTGGTCGGCGAAGGAGTAGGAGGAG
CAGAAGAAGCAGAGTGGGGGGCGTCGATGGTGGACGATGAGACACTGGCA
TCGGCGGTGGGTTTGTTTCTTCAGTATCAAGAAGGAGATTATTCCCACCG
AGACCACCCACCGAACCTGGCATTTGTGCTCGGAGGAGGAAGGGGACCAG
GGGGCGAGGAGGAAAATAGAAGGAGCAGTAGCCGGCTATCATGCATTATG
GCACTCGCGCAGGAGGCTTGGAAGGCGAATGCGGGCTTGTCTCAAACGGC
GGCCATGACAAAATTTTTGGTAGCGCTGGAAACGGTGATTCCAGGGTGGA
GAGACGGGGCGTTGACCATTCAATTTCCTGGATTTGGGGGGGGTGAGCCG
GTGGGGGGGGAGGGGGGGGGGAGGAAGTATGGCGTAGGAGGAGAGTAGCA
TGGACGATCGATAGACACCAGTAAGATGACGCCTCGCCAGTCGGGTAGTA
GAGTAGGGAAGTAAAGAATGGTAGCCAACAAAAGATGAAACGTGACATAT
ACAGTCAAGAAACTACAAAGCAAAATGCAAAGGAAAGCAGCAAAATAGTG
GGGAAATCAGGAGGGTGAGGTGCAGCCACAGCAGCAGCAGAGATAGGATA
CAAAATAAATAGGTGTAAATAAGGTACAGAAGTCTGTCACTTCCATGTTT
ATAGACTGACAAGATTGAAATACCCCAACAGAAA
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protein sequence of NO05G01380.1

>NO05G01380.1-protein ID=NO05G01380.1-protein|Name=NO05G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MVGGRSRGGGNTLSASPSNVSETPSSLRLQDVELEAQFCDGLRVLHNLLR
KSATILTSTTNSPRLFPTPRSPVHHVVGEGVGGAEEAEWGASMVDDETLA
SAVGLFLQYQEGDYSHRDHPPNLAFVLGGGRGPGGEEENRRSSSRLSCIM
ALAQEAWKANAGLSQTAAMTKFLVALETVIPGWRDGALTIQFPGFGGGEP
VGGEGGGRKYGVGGE*
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Synonyms
Publications