NO05G01380.1, NO05G01380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01380.1
Unique NameNO05G01380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length934
Alignment locationchr5:393273..394206 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:393273..394206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G01380.1 vs.
Match: EWM28249.1 (brefeldin a-inhibited guanine nucleotide-exchange [Nannochloropsis gaditana])

HSP 1 Score: 159.5 bits (402), Expect = 1.200e-35
Identity = 96/186 (51.61%), Postives = 119/186 (63.98%), Query Frame = 0
Query:    4 GRSRGGGNTLSASPSNVSETPSSLRLQDVELEAQFCDGLRVLHNLLR-KSATILTSTTNSPRLFPTPRSPVH---HVVGEGVGGAEEAEWGASMVDDETLASAVGLFLQYQEGDYSHRDHPPNLAFVLGGGRGPGGEEENRRSSSRLSCIMALAQEAWKANAGLSQTAAMTKFLVALETVIPGWRD 186
            GR RG G++LSAS S  S+ PSSLRLQDVELEA FCDGLR L+  +R K ++     +   R FP  RSP         +G  GA   +  +  +DD+ LA+AVGLFLQY+EGDY H D PP LA +       G   E  R SSR S ++ALA +AWKANAGLSQTAAMT+FL  L+  +PGW+D
Sbjct: 2033 GRPRGRGSSLSASSS--SDVPSSLRLQDVELEALFCDGLRALNERVRDKLSSDGKDDSTDRRAFPLARSPSFGNGKSKSDGGLGAGREKTASPSLDDQALATAVGLFLQYREGDYGHHDQPPTLAAL--AALEMGNRTEGARKSSRRSPVVALALKAWKANAGLSQTAAMTRFLEVLDEAMPGWKD 2214          
The following BLAST results are available for this feature:
BLAST of NO05G01380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28249.11.200e-3551.61brefeldin a-inhibited guanine nucleotide-exchange ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01380NO05G01380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01380.1NO05G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01380.1.cds1NO05G01380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01380.1 ID=NO05G01380.1|Name=NO05G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=934bp
ATGGTGGGAGGGAGGTCGAGGGGGGGTGGGAATACATTATCCGCATCTCC
GTCCAATGTGTCCGAGACTCCTTCCTCCTTGCGGTTGCAAGACGTGGAGC
TAGAGGCCCAATTCTGTGACGGGCTCCGGGTGCTGCACAATTTGTTGCGG
AAGAGCGCCACAATCCTCACCAGTACCACGAATAGCCCTCGTCTCTTTCC
TACCCCCAGATCCCCTGTGCATCACGTGGTCGGCGAAGGAGTAGGAGGAG
CAGAAGAAGCAGAGTGGGGGGCGTCGATGGTGGACGATGAGACACTGGCA
TCGGCGGTGGGTTTGTTTCTTCAGTATCAAGAAGGAGATTATTCCCACCG
AGACCACCCACCGAACCTGGCATTTGTGCTCGGAGGAGGAAGGGGACCAG
GGGGCGAGGAGGAAAATAGAAGGAGCAGTAGCCGGCTATCATGCATTATG
GCACTCGCGCAGGAGGCTTGGAAGGCGAATGCGGGCTTGTCTCAAACGGC
GGCCATGACAAAATTTTTGGTAGCGCTGGAAACGGTGATTCCAGGGTGGA
GAGACGGGGCGTTGACCATTCAATTTCCTGGATTTGGGGGGGGTGAGCCG
GTGGGGGGGGAGGGGGGGGGGAGGAAGTATGGCGTAGGAGGAGAGTAGCA
TGGACGATCGATAGACACCAGTAAGATGACGCCTCGCCAGTCGGGTAGTA
GAGTAGGGAAGTAAAGAATGGTAGCCAACAAAAGATGAAACGTGACATAT
ACAGTCAAGAAACTACAAAGCAAAATGCAAAGGAAAGCAGCAAAATAGTG
GGGAAATCAGGAGGGTGAGGTGCAGCCACAGCAGCAGCAGAGATAGGATA
CAAAATAAATAGGTGTAAATAAGGTACAGAAGTCTGTCACTTCCATGTTT
ATAGACTGACAAGATTGAAATACCCCAACAGAAA
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protein sequence of NO05G01380.1

>NO05G01380.1-protein ID=NO05G01380.1-protein|Name=NO05G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MVGGRSRGGGNTLSASPSNVSETPSSLRLQDVELEAQFCDGLRVLHNLLR
KSATILTSTTNSPRLFPTPRSPVHHVVGEGVGGAEEAEWGASMVDDETLA
SAVGLFLQYQEGDYSHRDHPPNLAFVLGGGRGPGGEEENRRSSSRLSCIM
ALAQEAWKANAGLSQTAAMTKFLVALETVIPGWRDGALTIQFPGFGGGEP
VGGEGGGRKYGVGGE*
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mRNA from alignment at chr5:393273..394206-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01380.1 ID=NO05G01380.1|Name=NO05G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=934bp|location=Sequence derived from alignment at chr5:393273..394206- (Nannochloropsis oceanica)
ATGGTGGGAGGGAGGTCGAGGGGGGGTGGGAATACATTATCCGCATCTCC GTCCAATGTGTCCGAGACTCCTTCCTCCTTGCGGTTGCAAGACGTGGAGC TAGAGGCCCAATTCTGTGACGGGCTCCGGGTGCTGCACAATTTGTTGCGG AAGAGCGCCACAATCCTCACCAGTACCACGAATAGCCCTCGTCTCTTTCC TACCCCCAGATCCCCTGTGCATCACGTGGTCGGCGAAGGAGTAGGAGGAG CAGAAGAAGCAGAGTGGGGGGCGTCGATGGTGGACGATGAGACACTGGCA TCGGCGGTGGGTTTGTTTCTTCAGTATCAAGAAGGAGATTATTCCCACCG AGACCACCCACCGAACCTGGCATTTGTGCTCGGAGGAGGAAGGGGACCAG GGGGCGAGGAGGAAAATAGAAGGAGCAGTAGCCGGCTATCATGCATTATG GCACTCGCGCAGGAGGCTTGGAAGGCGAATGCGGGCTTGTCTCAAACGGC GGCCATGACAAAATTTTTGGTAGCGCTGGAAACGGTGATTCCAGGGTGGA GAGACGGGGCGTTGACCATTCAATTTCCTGGATTTGGGGGGGGTGAGCCG GTGGGGGGGGAGGGGGGGGGGAGGAAGTATGGCGTAGGAGGAGAGTAGCA TGGACGATCGATAGACACCAGTAAGATGACGCCTCGCCAGTCGGGTAGTA GAGTAGGGAAGTAAAGAATGGTAGCCAACAAAAGATGAAACGTGACATAT ACAGTCAAGAAACTACAAAGCAAAATGCAAAGGAAAGCAGCAAAATAGTG GGGAAATCAGGAGGGTGAGGTGCAGCCACAGCAGCAGCAGAGATAGGATA CAAAATAAATAGGTGTAAATAAGGTACAGAAGTCTGTCACTTCCATGTTT ATAGACTGACAAGATTGAAATACCCCAACAGAAA
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Coding sequence (CDS) from alignment at chr5:393273..394206-

>NO05G01380.1 ID=NO05G01380.1|Name=NO05G01380.1|organism=Nannochloropsis oceanica|type=CDS|length=648bp|location=Sequence derived from alignment at chr5:393273..394206- (Nannochloropsis oceanica)
ATGGTGGGAGGGAGGTCGAGGGGGGGTGGGAATACATTATCCGCATCTCC
GTCCAATGTGTCCGAGACTCCTTCCTCCTTGCGGTTGCAAGACGTGGAGC
TAGAGGCCCAATTCTGTGACGGGCTCCGGGTGCTGCACAATTTGTTGCGG
AAGAGCGCCACAATCCTCACCAGTACCACGAATAGCCCTCGTCTCTTTCC
TACCCCCAGATCCCCTGTGCATCACGTGGTCGGCGAAGGAGTAGGAGGAG
CAGAAGAAGCAGAGTGGGGGGCGTCGATGGTGGACGATGAGACACTGGCA
TCGGCGGTGGGTTTGTTTCTTCAGTATCAAGAAGGAGATTATTCCCACCG
AGACCACCCACCGAACCTGGCATTTGTGCTCGGAGGAGGAAGGGGACCAG
GGGGCGAGGAGGAAAATAGAAGGAGCAGTAGCCGGCTATCATGCATTATG
GCACTCGCGCAGGAGGCTTGGAAGGCGAATGCGGGCTTGTCTCAAACGGC
GGCCATGACAAAATTTTTGGTAGCGCTGGAAACGGTGATTCCAGGGTGGA
GAGACGGGGCGTTGACCATTCAATTTCCTGGATTTGGGGGGGGTGAGCCG
GTGGGGGGGGAGGGGGGGGGGAGGAAGTATGGCGTAGGAGGAGAGTAG
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Synonyms
Publications