NO05G01370, NO05G01370 (gene) Nannochloropsis oceanica

Overview
NameNO05G01370
Unique NameNO05G01370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1704
Alignment locationchr5:391460..393163 -

Link to JBrowse

Properties
Property NameValue
DescriptionVesicle transport protein, Use1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:391460..393163 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019150Vesicle_transport_protein_Use1
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO05G01370 vs. NCBI_GenBank
Match: EWM28286.1 (Vesicle transport protein, Use1 [Nannochloropsis gaditana])

HSP 1 Score: 212.2 bits (539), Expect = 1.900e-51
Identity = 138/251 (54.98%), Postives = 166/251 (66.14%), Query Frame = 0 
Query:   22 FLKALREQLTELHSLDLGVVLAPKTLQGYSFRVDALERILSARKQELRRFKAMEGSRPTGSGISTSTSTNVXXXXRXXXXXXXXXXXXXPPAPGPIVGSPLPISIRPGLK-PPLPFSK-----VGKRGGAKEAEG----IDRDLQEKVDREKEAQQMLTEQLGELVGALKASSMLVHSNLKTQNKVLDNTEDAAQRNLDGLQVELKKTEEQLKKSWSNSLTSFFMIFMMLAIFFVTFLFMRVFPKRRWMLW 263
            FL+ALREQL ELH+LDLGVV+APKTLQ +SFRVD LER L  R+QELRRF A       GS  + S ST                       P  + G  +      G +  P   S+      G+ G +K+ +G    +D   ++KV +EKEAQQ+LTEQL ELVGALKASSMLVH++L+ QNKVLD TEDAAQRNLD LQVELKKTEEQLK++WSNSLTS FMI ++L+IF  T LFMR FPKRRW+LW
Sbjct:   79 FLRALREQLVELHNLDLGVVVAPKTLQEFSFRVDGLERSLMDRQQELRRFHA--SGALNGSKDNPSMSTK----------------------PSAVTGPDITSGTVQGTRTTPCRESRGGNFLSGQAGKSKKGKGRGDRVDGGDEDKVTKEKEAQQVLTEQLEELVGALKASSMLVHTSLRAQNKVLDKTEDAAQRNLDSLQVELKKTEEQLKRNWSNSLTSCFMIAIILSIFMGTLLFMRFFPKRRWILW 305
The following BLAST results are available for this feature:
BLAST of NO05G01370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28286.11.900e-5154.98Vesicle transport protein, Use1 [Nannochloropsis g... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01370.3NO05G01370.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G01370.2NO05G01370.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G01370.1NO05G01370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583843gene_2928Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g60gene2319Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01370.3NO05G01370.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G01370.2NO05G01370.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G01370.1NO05G01370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01370 ID=NO05G01370|Name=NO05G01370|organism=Nannochloropsis oceanica|type=gene|length=1704bp
TCGGGGAAAGAAGTCCTCTTTTTCTTCTTTTCATGTTTGGCTTCGACGCT
CCGCTATCTATATACATACAAATTTTGATGCTCGTTATTGGATATGCATG
CGCATTGGCTTGTAAGTCGGACTGGACGGGGAAGGGGCAGGGGTACGGAG
GATAACAATCTCCGGCTGATGGTGTGAATTGGTTGATTCACATCATGGGT
ATCGCGAAGTGGACAAGAAGCTCTGGCTATCCCTGTGTCGTTTGTGTGTG
TGGTGGGGATACGTATGGGGAGGAAAGTGATGTTTGTAATTTGAAAAGTT
CGCGATGACGGCCGGTGACGACTTGCTTCAAATCAAACCCCACTCTTCCC
CATCCTTGTCTTCCCCTCACCACACTGCACGTCCCACACGCCCGGTACAC
CTTGATCACAGGCCAATGGCGGGAGGAGAGCTTGGGGCTCAGCAGCTCCC
GCAGCGGCGGCGGGTTGTAGACTTTGTGCGGTTGTTGAATGCAACGGAGA
CGACGTTGCAGCAGGGCGTCTTAGCGAGCACCCGGCCAGATGAGAGGGTC
TACTTGTTGGAGCTGAATCGTCAGCATGTGGTACGTTTGACATGCGTGAA
GAGAGTTTGTGTGCTATCGCTCAACTCGTTTTACGATCCTACCCTTTGCT
CCAGTTCTTAAAGGCCTTGCGGGAGCAACTCACGGAGCTGCACAGCCTGG
ACCTGGGCGTGGTATTGGCGCCCAAGACATTGCAGGGTTACAGCTTTCGC
GTGGACGCCCTGGAACGCATTCTCTCGGCACGAAAGCAGGAATTGCGGCG
GTTCAAGGCCATGGAAGGGAGTCGACCCACCGGTAGCGGCATCAGCACCA
GCACCAGCACCAACGTGACTAGCAGTGCAAGGGGCAGCACTCTCGCCGGA
GCGGCTCTTTCCGGCAACGCACCTCCAGCACCAGGCCCCATAGTTGGAAG
CCCTCTTCCTATCAGTATCCGTCCAGGGCTAAAACCACCACTTCCGTTCA
GTAAAGTAGGGAAAAGGGGAGGGGCAAAAGAAGCGGAGGGAATTGACCGT
GACCTGCAAGAAAAGGTGGACCGGGAAAAGGAGGCACAGCAAATGCTGAC
GGAGCAGTTGGGAGAGCTGGTAGGTGCACTCAAGGCCAGTTCAATGCTCG
TACATTCGAATTTGAAGACGCAGAACAAGgtaggtttcaatttcttgtgc
aatataaggaaaggggattggctttttactaggacgaggatgccttttgc
ccttgggtcacagactatgtggatgagagcatggagaatgggaagaaatt
ttgaatgaggcgctgacaagcaagatttcataaaacttaacttgtatccg
aattggctcatgttgcatccctaccttatctttccccggcacggtagGTG
CTGGACAACACGGAGGACGCGGCCCAACGGAATTTGGACGGCTTGCAGGT
GGAGTTGAAGAAAACCGAAGAGCAGCTGAAGAAAAGCTGGAGCAATTCTT
TAACGTCGTTCTTCATGATCTTCATGATGCTTGCCATCTTTTTCGTTACA
TTTTTGTTCATGCGGGTTTTTCCAAAGCGACGGTGGATGTTGTGGTGAAG
ATATGAGAGATGGCACGGAGCACTGATTTATTAGACCAGCCGGGACATCA
AAGCACCCTCTCTTAAGAGGAGACAAAGAAAAGTAAGAAAGAGACGCATG
TACA
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protein sequence of NO05G01370.3

>NO05G01370.3-protein ID=NO05G01370.3-protein|Name=NO05G01370.3|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MTAGDDLLQIKPHSSPSLSSPHHTARPTRPVHLDHRPMAGGELGAQQLPQ
RRRVVDFVRLLNATETTLQQGVLASTRPDERVYLLELNRQHVFLKALREQ
LTELHSLDLGVVLAPKTLQGYSFRVDALERILSARKQELRRFKAMEGSRP
TGSGISTSTSTNVTSSARGSTLAGAALSGNAPPAPGPIVGSPLPISIRPG
LKPPLPFSKVGKRGGAKEAEGIDRDLQEKVDREKEAQQMLTEQLGELVGA
LKASSMLVHSNLKTQNKVGFNFLCNIRKGDWLFTRTRMPFALGSQTMWMR
AWRMGRNFE*
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protein sequence of NO05G01370.2

>NO05G01370.2-protein ID=NO05G01370.2-protein|Name=NO05G01370.2|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MREESLCAIAQLVLRSYPLLQFLKALREQLTELHSLDLGVVLAPKTLQGY
SFRVDALERILSARKQELRRFKAMEGSRPTGSGISTSTSTNVTSSARGST
LAGAALSGNAPPAPGPIVGSPLPISIRPGLKPPLPFSKVGKRGGAKEAEG
IDRDLQEKVDREKEAQQMLTEQLGELVGALKASSMLVHSNLKTQNKVLDN
TEDAAQRNLDGLQVELKKTEEQLKKSWSNSLTSFFMIFMMLAIFFVTFLF
MRVFPKRRWMLW*
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protein sequence of NO05G01370.1

>NO05G01370.1-protein ID=NO05G01370.1-protein|Name=NO05G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MTAGDDLLQIKPHSSPSLSSPHHTARPTRPVHLDHRPMAGGELGAQQLPQ
RRRVVDFVRLLNATETTLQQGVLASTRPDERVYLLELNRQHVFLKALREQ
LTELHSLDLGVVLAPKTLQGYSFRVDALERILSARKQELRRFKAMEGSRP
TGSGISTSTSTNVTSSARGSTLAGAALSGNAPPAPGPIVGSPLPISIRPG
LKPPLPFSKVGKRGGAKEAEGIDRDLQEKVDREKEAQQMLTEQLGELVGA
LKASSMLVHSNLKTQNKVLDNTEDAAQRNLDGLQVELKKTEEQLKKSWSN
SLTSFFMIFMMLAIFFVTFLFMRVFPKRRWMLW*
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Synonyms
Publications