NO05G01370.1, NO05G01370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01370.1
Unique NameNO05G01370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1412
Alignment locationchr5:391460..393163 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:391460..393163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01370.1 vs.
Match: EWM28286.1 (Vesicle transport protein, Use1 [Nannochloropsis gaditana])

HSP 1 Score: 255.0 bits (650), Expect = 3.300e-64
Identity = 169/301 (56.15%), Postives = 202/301 (67.11%), Query Frame = 0 
Query:   37 PMAGGELGAQQLPQRRRVVDFVRLLNATETTLQQGVLASTRPDERVYLLELNRQHVFLKALREQLTELHSLDLGVVLAPKTLQGYSFRVDALERILSARKQELRRFKAMEGSRPTGSGISTSTSTNVTSSARGSTLAGAALSGNAPPAPGPIVGS-PLPISIRPG---LKPPLPFSKVGKRGGAKEAEGIDRDLQEKVDREKEAQQMLTEQLGELVGALKASSMLVHSNLKTQNKVLDNTEDAAQRNLDGLQVELKKTEEQLKKSWSNSLTSFFMIFMMLAIFFVTFLFMRVFPKRRWMLW 334
            PM G E  A  LP RRR+VDF RLL ATE   +  +  S  P +R YLLELNR + FL+ALREQL ELH+LDLGVV+APKTLQ +SFRVD LER L  R+QELRRF A        SG    +  N + S + S + G  ++       G + G+   P     G   L      SK GK  G +    +D   ++KV +EKEAQQ+LTEQL ELVGALKASSMLVH++L+ QNKVLD TEDAAQRNLD LQVELKKTEEQLK++WSNSLTS FMI ++L+IF  T LFMR FPKRRW+LW
Sbjct:   26 PMGGSEQTAM-LPHRRRLVDFSRLLKATERIHKASLGLS--PGQRAYLLELNRLNAFLRALREQLVELHNLDLGVVVAPKTLQEFSFRVDGLERSLMDRQQELRRFHA--------SGALNGSKDNPSMSTKPSAVTGPDITS------GTVQGTRTTPCRESRGGNFLSGQAGKSKKGKGRGDR----VDGGDEDKVTKEKEAQQVLTEQLEELVGALKASSMLVHTSLRAQNKVLDKTEDAAQRNLDSLQVELKKTEEQLKRNWSNSLTSCFMIAIILSIFMGTLLFMRFFPKRRWILW 305
The following BLAST results are available for this feature:
BLAST of NO05G01370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28286.13.300e-6456.15Vesicle transport protein, Use1 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01370NO05G01370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01370.1NO05G01370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01370.1.cds1NO05G01370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01370.1.cds2NO05G01370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01370.1.cds3NO05G01370.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01370.1 ID=NO05G01370.1|Name=NO05G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1412bp
TCGGGGAAAGAAGTCCTCTTTTTCTTCTTTTCATGTTTGGCTTCGACGCT
CCGCTATCTATATACATACAAATTTTGATGCTCGTTATTGGATATGCATG
CGCATTGGCTTGTAAGTCGGACTGGACGGGGAAGGGGCAGGGGTACGGAG
GATAACAATCTCCGGCTGATGGTGTGAATTGGTTGATTCACATCATGGGT
ATCGCGAAGTGGACAAGAAGCTCTGGCTATCCCTGTGTCGTTTGTGTGTG
TGGTGGGGATACGTATGGGGAGGAAAGTGATGTTTGTAATTTGAAAAGTT
CGCGATGACGGCCGGTGACGACTTGCTTCAAATCAAACCCCACTCTTCCC
CATCCTTGTCTTCCCCTCACCACACTGCACGTCCCACACGCCCGGTACAC
CTTGATCACAGGCCAATGGCGGGAGGAGAGCTTGGGGCTCAGCAGCTCCC
GCAGCGGCGGCGGGTTGTAGACTTTGTGCGGTTGTTGAATGCAACGGAGA
CGACGTTGCAGCAGGGCGTCTTAGCGAGCACCCGGCCAGATGAGAGGGTC
TACTTGTTGGAGCTGAATCGTCAGCATGTGTTCTTAAAGGCCTTGCGGGA
GCAACTCACGGAGCTGCACAGCCTGGACCTGGGCGTGGTATTGGCGCCCA
AGACATTGCAGGGTTACAGCTTTCGCGTGGACGCCCTGGAACGCATTCTC
TCGGCACGAAAGCAGGAATTGCGGCGGTTCAAGGCCATGGAAGGGAGTCG
ACCCACCGGTAGCGGCATCAGCACCAGCACCAGCACCAACGTGACTAGCA
GTGCAAGGGGCAGCACTCTCGCCGGAGCGGCTCTTTCCGGCAACGCACCT
CCAGCACCAGGCCCCATAGTTGGAAGCCCTCTTCCTATCAGTATCCGTCC
AGGGCTAAAACCACCACTTCCGTTCAGTAAAGTAGGGAAAAGGGGAGGGG
CAAAAGAAGCGGAGGGAATTGACCGTGACCTGCAAGAAAAGGTGGACCGG
GAAAAGGAGGCACAGCAAATGCTGACGGAGCAGTTGGGAGAGCTGGTAGG
TGCACTCAAGGCCAGTTCAATGCTCGTACATTCGAATTTGAAGACGCAGA
ACAAGGTGCTGGACAACACGGAGGACGCGGCCCAACGGAATTTGGACGGC
TTGCAGGTGGAGTTGAAGAAAACCGAAGAGCAGCTGAAGAAAAGCTGGAG
CAATTCTTTAACGTCGTTCTTCATGATCTTCATGATGCTTGCCATCTTTT
TCGTTACATTTTTGTTCATGCGGGTTTTTCCAAAGCGACGGTGGATGTTG
TGGTGAAGATATGAGAGATGGCACGGAGCACTGATTTATTAGACCAGCCG
GGACATCAAAGCACCCTCTCTTAAGAGGAGACAAAGAAAAGTAAGAAAGA
GACGCATGTACA
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protein sequence of NO05G01370.1

>NO05G01370.1-protein ID=NO05G01370.1-protein|Name=NO05G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MTAGDDLLQIKPHSSPSLSSPHHTARPTRPVHLDHRPMAGGELGAQQLPQ
RRRVVDFVRLLNATETTLQQGVLASTRPDERVYLLELNRQHVFLKALREQ
LTELHSLDLGVVLAPKTLQGYSFRVDALERILSARKQELRRFKAMEGSRP
TGSGISTSTSTNVTSSARGSTLAGAALSGNAPPAPGPIVGSPLPISIRPG
LKPPLPFSKVGKRGGAKEAEGIDRDLQEKVDREKEAQQMLTEQLGELVGA
LKASSMLVHSNLKTQNKVLDNTEDAAQRNLDGLQVELKKTEEQLKKSWSN
SLTSFFMIFMMLAIFFVTFLFMRVFPKRRWMLW*
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mRNA from alignment at chr5:391460..393163-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01370.1 ID=NO05G01370.1|Name=NO05G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1704bp|location=Sequence derived from alignment at chr5:391460..393163- (Nannochloropsis oceanica)
TCGGGGAAAGAAGTCCTCTTTTTCTTCTTTTCATGTTTGGCTTCGACGCT
CCGCTATCTATATACATACAAATTTTGATGCTCGTTATTGGATATGCATG
CGCATTGGCTTGTAAGTCGGACTGGACGGGGAAGGGGCAGGGGTACGGAG
GATAACAATCTCCGGCTGATGGTGTGAATTGGTTGATTCACATCATGGGT
ATCGCGAAGTGGACAAGAAGCTCTGGCTATCCCTGTGTCGTTTGTGTGTG
TGGTGGGGATACGTATGGGGAGGAAAGTGATGTTTGTAATTTGAAAAGTT
CGCGATGACGGCCGGTGACGACTTGCTTCAAATCAAACCCCACTCTTCCC
CATCCTTGTCTTCCCCTCACCACACTGCACGTCCCACACGCCCGGTACAC
CTTGATCACAGGCCAATGGCGGGAGGAGAGCTTGGGGCTCAGCAGCTCCC
GCAGCGGCGGCGGGTTGTAGACTTTGTGCGGTTGTTGAATGCAACGGAGA
CGACGTTGCAGCAGGGCGTCTTAGCGAGCACCCGGCCAGATGAGAGGGTC
TACTTGTTGGAGCTGAATCGTCAGCATGTGGTACGTTTGACATGCGTGAA
GAGAGTTTGTGTGCTATCGCTCAACTCGTTTTACGATCCTACCCTTTGCT
CCAGTTCTTAAAGGCCTTGCGGGAGCAACTCACGGAGCTGCACAGCCTGG
ACCTGGGCGTGGTATTGGCGCCCAAGACATTGCAGGGTTACAGCTTTCGC
GTGGACGCCCTGGAACGCATTCTCTCGGCACGAAAGCAGGAATTGCGGCG
GTTCAAGGCCATGGAAGGGAGTCGACCCACCGGTAGCGGCATCAGCACCA
GCACCAGCACCAACGTGACTAGCAGTGCAAGGGGCAGCACTCTCGCCGGA
GCGGCTCTTTCCGGCAACGCACCTCCAGCACCAGGCCCCATAGTTGGAAG
CCCTCTTCCTATCAGTATCCGTCCAGGGCTAAAACCACCACTTCCGTTCA
GTAAAGTAGGGAAAAGGGGAGGGGCAAAAGAAGCGGAGGGAATTGACCGT
GACCTGCAAGAAAAGGTGGACCGGGAAAAGGAGGCACAGCAAATGCTGAC
GGAGCAGTTGGGAGAGCTGGTAGGTGCACTCAAGGCCAGTTCAATGCTCG
TACATTCGAATTTGAAGACGCAGAACAAGGTAGGTTTCAATTTCTTGTGC
AATATAAGGAAAGGGGATTGGCTTTTTACTAGGACGAGGATGCCTTTTGC
CCTTGGGTCACAGACTATGTGGATGAGAGCATGGAGAATGGGAAGAAATT
TTGAATGAGGCGCTGACAAGCAAGATTTCATAAAACTTAACTTGTATCCG
AATTGGCTCATGTTGCATCCCTACCTTATCTTTCCCCGGCACGGTAGGTG
CTGGACAACACGGAGGACGCGGCCCAACGGAATTTGGACGGCTTGCAGGT
GGAGTTGAAGAAAACCGAAGAGCAGCTGAAGAAAAGCTGGAGCAATTCTT
TAACGTCGTTCTTCATGATCTTCATGATGCTTGCCATCTTTTTCGTTACA
TTTTTGTTCATGCGGGTTTTTCCAAAGCGACGGTGGATGTTGTGGTGAAG
ATATGAGAGATGGCACGGAGCACTGATTTATTAGACCAGCCGGGACATCA
AAGCACCCTCTCTTAAGAGGAGACAAAGAAAAGTAAGAAAGAGACGCATG
TACA
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Coding sequence (CDS) from alignment at chr5:391460..393163-

>NO05G01370.1 ID=NO05G01370.1|Name=NO05G01370.1|organism=Nannochloropsis oceanica|type=CDS|length=1002bp|location=Sequence derived from alignment at chr5:391460..393163- (Nannochloropsis oceanica)
ATGACGGCCGGTGACGACTTGCTTCAAATCAAACCCCACTCTTCCCCATC
CTTGTCTTCCCCTCACCACACTGCACGTCCCACACGCCCGGTACACCTTG
ATCACAGGCCAATGGCGGGAGGAGAGCTTGGGGCTCAGCAGCTCCCGCAG
CGGCGGCGGGTTGTAGACTTTGTGCGGTTGTTGAATGCAACGGAGACGAC
GTTGCAGCAGGGCGTCTTAGCGAGCACCCGGCCAGATGAGAGGGTCTACT
TGTTGGAGCTGAATCGTCAGCATGTGTTCTTAAAGGCCTTGCGGGAGCAA
CTCACGGAGCTGCACAGCCTGGACCTGGGCGTGGTATTGGCGCCCAAGAC
ATTGCAGGGTTACAGCTTTCGCGTGGACGCCCTGGAACGCATTCTCTCGG
CACGAAAGCAGGAATTGCGGCGGTTCAAGGCCATGGAAGGGAGTCGACCC
ACCGGTAGCGGCATCAGCACCAGCACCAGCACCAACGTGACTAGCAGTGC
AAGGGGCAGCACTCTCGCCGGAGCGGCTCTTTCCGGCAACGCACCTCCAG
CACCAGGCCCCATAGTTGGAAGCCCTCTTCCTATCAGTATCCGTCCAGGG
CTAAAACCACCACTTCCGTTCAGTAAAGTAGGGAAAAGGGGAGGGGCAAA
AGAAGCGGAGGGAATTGACCGTGACCTGCAAGAAAAGGTGGACCGGGAAA
AGGAGGCACAGCAAATGCTGACGGAGCAGTTGGGAGAGCTGGTAGGTGCA
CTCAAGGCCAGTTCAATGCTCGTACATTCGAATTTGAAGACGCAGAACAA
GGTGCTGGACAACACGGAGGACGCGGCCCAACGGAATTTGGACGGCTTGC
AGGTGGAGTTGAAGAAAACCGAAGAGCAGCTGAAGAAAAGCTGGAGCAAT
TCTTTAACGTCGTTCTTCATGATCTTCATGATGCTTGCCATCTTTTTCGT
TACATTTTTGTTCATGCGGGTTTTTCCAAAGCGACGGTGGATGTTGTGGT
GA
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Synonyms
Publications