NO05G01240, NO05G01240 (gene) Nannochloropsis oceanica

Overview
NameNO05G01240
Unique NameNO05G01240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length420
Alignment locationchr5:353883..354302 +

Link to JBrowse

Properties
Property NameValue
DescriptionPurine nucleoside phosphorylase inosine and guanosine-specific
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:353883..354302 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0009116nucleoside metabolic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR035994Nucleoside_phosphorylase_sf
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO05G01240 vs. NCBI_GenBank
Match: EWM28270.1 (purine nucleoside phosphorylase inosine and guanosine-specific [Nannochloropsis gaditana])

HSP 1 Score: 204.5 bits (519), Expect = 2.100e-49
Identity = 98/137 (71.53%), Postives = 119/137 (86.86%), Query Frame = 0 
Query:    3 VGMSTVPEVLVADHCGLKVVALSGIYFVTQENTERLAGIPHYEYDTDKRVAYEMKLRREEEHRQGEIAPKMTALLRGLVQSLGDTRDIAMDFDVADIARWRFPTTLCVSWNKVIVGVMGVGMAVSVLVTVVAERRRR 140
            VGMSTVPEVLVA+HCGLKV+ LSGIY VTQENT +L  IPHYEY T KRVA+EM  RREEE+RQ ++APKMTALLRGL+++LGDT DIAMD+DVA+IARWRFPTTLCVSW+++I+G   V +A+ +LVT + E+RRR
Sbjct:  276 VGMSTVPEVLVAEHCGLKVLVLSGIYHVTQENTVKLTAIPHYEYKTHKRVAFEMTRRREEEYRQSQVAPKMTALLRGLLRALGDTSDIAMDYDVAEIARWRFPTTLCVSWHRLILGSTSVALALGLLVTALEEQRRR 412
The following BLAST results are available for this feature:
BLAST of NO05G01240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28270.12.100e-4971.53purine nucleoside phosphorylase inosine and guanos... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01240.1NO05G01240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01240.1NO05G01240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01240 ID=NO05G01240|Name=NO05G01240|organism=Nannochloropsis oceanica|type=gene|length=420bp
ATGGTGGTGGGGATGAGCACGGTGCCCGAGGTGCTGGTGGCTGATCATTG
CGGCTTGAAGGTGGTGGCATTGAGTGGAATCTATTTCGTCACGCAAGAGA
ACACGGAAAGGCTGGCTGGGATTCCGCATTATGAATATGATACCGATAAG
CGGGTGGCGTATGAGATGAAACTAAGGAGGGAGGAGGAGCATCGACAGGG
GGAAATCGCCCCTAAGATGACGGCGTTGTTAAGAGGGTTGGTGCAGTCCT
TGGGAGACACGAGGGATATAGCCATGGATTTCGATGTGGCAGATATTGCC
CGGTGGAGGTTTCCGACCACGTTGTGCGTGTCGTGGAACAAGGTGATAGT
AGGCGTGATGGGCGTAGGGATGGCGGTTAGTGTGCTGGTCACTGTGGTAG
CTGAAAGAAGGCGACGATAG
back to top

protein sequence of NO05G01240.1

>NO05G01240.1-protein ID=NO05G01240.1-protein|Name=NO05G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MVVGMSTVPEVLVADHCGLKVVALSGIYFVTQENTERLAGIPHYEYDTDK
RVAYEMKLRREEEHRQGEIAPKMTALLRGLVQSLGDTRDIAMDFDVADIA
RWRFPTTLCVSWNKVIVGVMGVGMAVSVLVTVVAERRRR*
back to top
Synonyms
Publications