NO05G01240.1, NO05G01240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01240.1
Unique NameNO05G01240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length420
Alignment locationchr5:353883..354302 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:353883..354302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01240.1 vs.
Match: EWM28270.1 (purine nucleoside phosphorylase inosine and guanosine-specific [Nannochloropsis gaditana])

HSP 1 Score: 204.5 bits (519), Expect = 2.100e-49
Identity = 98/137 (71.53%), Postives = 119/137 (86.86%), Query Frame = 0 
Query:    3 VGMSTVPEVLVADHCGLKVVALSGIYFVTQENTERLAGIPHYEYDTDKRVAYEMKLRREEEHRQGEIAPKMTALLRGLVQSLGDTRDIAMDFDVADIARWRFPTTLCVSWNKVIVGVMGVGMAVSVLVTVVAERRRR 140
            VGMSTVPEVLVA+HCGLKV+ LSGIY VTQENT +L  IPHYEY T KRVA+EM  RREEE+RQ ++APKMTALLRGL+++LGDT DIAMD+DVA+IARWRFPTTLCVSW+++I+G   V +A+ +LVT + E+RRR
Sbjct:  276 VGMSTVPEVLVAEHCGLKVLVLSGIYHVTQENTVKLTAIPHYEYKTHKRVAFEMTRRREEEYRQSQVAPKMTALLRGLLRALGDTSDIAMDYDVAEIARWRFPTTLCVSWHRLILGSTSVALALGLLVTALEEQRRR 412
The following BLAST results are available for this feature:
BLAST of NO05G01240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28270.12.100e-4971.53purine nucleoside phosphorylase inosine and guanos... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01240NO05G01240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01240.1NO05G01240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01240.1.cds1NO05G01240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01240.1 ID=NO05G01240.1|Name=NO05G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=420bp
ATGGTGGTGGGGATGAGCACGGTGCCCGAGGTGCTGGTGGCTGATCATTG
CGGCTTGAAGGTGGTGGCATTGAGTGGAATCTATTTCGTCACGCAAGAGA
ACACGGAAAGGCTGGCTGGGATTCCGCATTATGAATATGATACCGATAAG
CGGGTGGCGTATGAGATGAAACTAAGGAGGGAGGAGGAGCATCGACAGGG
GGAAATCGCCCCTAAGATGACGGCGTTGTTAAGAGGGTTGGTGCAGTCCT
TGGGAGACACGAGGGATATAGCCATGGATTTCGATGTGGCAGATATTGCC
CGGTGGAGGTTTCCGACCACGTTGTGCGTGTCGTGGAACAAGGTGATAGT
AGGCGTGATGGGCGTAGGGATGGCGGTTAGTGTGCTGGTCACTGTGGTAG
CTGAAAGAAGGCGACGATAG
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protein sequence of NO05G01240.1

>NO05G01240.1-protein ID=NO05G01240.1-protein|Name=NO05G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MVVGMSTVPEVLVADHCGLKVVALSGIYFVTQENTERLAGIPHYEYDTDK
RVAYEMKLRREEEHRQGEIAPKMTALLRGLVQSLGDTRDIAMDFDVADIA
RWRFPTTLCVSWNKVIVGVMGVGMAVSVLVTVVAERRRR*
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mRNA from alignment at chr5:353883..354302+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01240.1 ID=NO05G01240.1|Name=NO05G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=420bp|location=Sequence derived from alignment at chr5:353883..354302+ (Nannochloropsis oceanica)
ATGGTGGTGGGGATGAGCACGGTGCCCGAGGTGCTGGTGGCTGATCATTG
CGGCTTGAAGGTGGTGGCATTGAGTGGAATCTATTTCGTCACGCAAGAGA
ACACGGAAAGGCTGGCTGGGATTCCGCATTATGAATATGATACCGATAAG
CGGGTGGCGTATGAGATGAAACTAAGGAGGGAGGAGGAGCATCGACAGGG
GGAAATCGCCCCTAAGATGACGGCGTTGTTAAGAGGGTTGGTGCAGTCCT
TGGGAGACACGAGGGATATAGCCATGGATTTCGATGTGGCAGATATTGCC
CGGTGGAGGTTTCCGACCACGTTGTGCGTGTCGTGGAACAAGGTGATAGT
AGGCGTGATGGGCGTAGGGATGGCGGTTAGTGTGCTGGTCACTGTGGTAG
CTGAAAGAAGGCGACGATAG
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Coding sequence (CDS) from alignment at chr5:353883..354302+

>NO05G01240.1 ID=NO05G01240.1|Name=NO05G01240.1|organism=Nannochloropsis oceanica|type=CDS|length=420bp|location=Sequence derived from alignment at chr5:353883..354302+ (Nannochloropsis oceanica)
ATGGTGGTGGGGATGAGCACGGTGCCCGAGGTGCTGGTGGCTGATCATTG
CGGCTTGAAGGTGGTGGCATTGAGTGGAATCTATTTCGTCACGCAAGAGA
ACACGGAAAGGCTGGCTGGGATTCCGCATTATGAATATGATACCGATAAG
CGGGTGGCGTATGAGATGAAACTAAGGAGGGAGGAGGAGCATCGACAGGG
GGAAATCGCCCCTAAGATGACGGCGTTGTTAAGAGGGTTGGTGCAGTCCT
TGGGAGACACGAGGGATATAGCCATGGATTTCGATGTGGCAGATATTGCC
CGGTGGAGGTTTCCGACCACGTTGTGCGTGTCGTGGAACAAGGTGATAGT
AGGCGTGATGGGCGTAGGGATGGCGGTTAGTGTGCTGGTCACTGTGGTAG
CTGAAAGAAGGCGACGATAG
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Synonyms
Publications