NO05G01180, NO05G01180 (gene) Nannochloropsis oceanica

Overview
NameNO05G01180
Unique NameNO05G01180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length670
Alignment locationchr5:344625..345294 +

Link to JBrowse

Properties
Property NameValue
DescriptionPDZ domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:344625..345294 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G01180 vs. NCBI_GenBank
Match: EWM28272.1 (PDZ domain protein [Nannochloropsis gaditana])

HSP 1 Score: 137.5 bits (345), Expect = 3.700e-29
Identity = 66/139 (47.48%), Postives = 94/139 (67.63%), Query Frame = 0 
Query:    5 IDLNEYYRGVLAHAQRLLTAHMTVGEVIKKRVVEFRNRCHELRVEEQNIDKATIAARWDNFNRQITVHEHSQKTLEVLFKRLGKLVYELLPSINQRIDEQLFQRLKKLEPMMGEFSDLESIIKEVTQGGAQGAGAGLKG 144
            +D NEY+RGVLAH  RL+  +  V E++KKR+V +R +CHE R+ +  +DKA +A RWD  N Q   H   QK++  L  +L + V EL P++N +IDEQL+ +L+KLE +MGE  DL S++KEV+Q G  G  AG +G
Sbjct:  585 LDGNEYFRGVLAHVHRLVEENGAVRELLKKRIVTYRMQCHEFRMADTRVDKAPLARRWDELNDQYRTHGDVQKSIHKLVTQLEQAVGELYPAVNGQIDEQLYLQLRKLETIMGEIGDLNSVLKEVSQAGRNGHAAGARG 723
The following BLAST results are available for this feature:
BLAST of NO05G01180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28272.13.700e-2947.48PDZ domain protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01180.1NO05G01180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01180.1NO05G01180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01180 ID=NO05G01180|Name=NO05G01180|organism=Nannochloropsis oceanica|type=gene|length=670bp
ATGAAATCGCATATAGATCTCAATGAATATTATCGAGGGGTGCTTGCCCA
TGCGCAGCGGCTGCTGACAGCCCATATGACGGTGGGGGAAGTGATCAAGA
AGAGGGTGGTGGAATTTAGGAATAGGTGCCACGAGCTGAGGGTTGAGGAA
CAGAATATAGATAAGGCCACGATTGCGGCGCGATGGGATAATTgtgagta
tgataacggaggatgggagtcgggagaatggagggggaggctattggtgc
atttttggtttctgtgcacgattggctgtttgcgcatcgtgtaagtaacg
cataaatgagacctaccctttaatccactctctaacccccactctctccc
tcccacccctcctcttagTTAACCGTCAAATTACTGTCCACGAGCACTCT
CAGAAGACTCTCGAAGTACTTTTCAAACGCCTCGGCAAGCTGGTGTATGA
GTTGCTCCCAAGCATCAACCAACGAATCGATGAGCAGCTCTTTCAAAGAC
TGAAGAAGCTTGAGCCCATGATGGGGGAATTTTCAGACTTGGAGTCGATC
ATCAAGGAGGTGACCCAGGGGGGGGCGCAAGGGGCTGGAGCGGGGCTGAA
GGGCGCTGCAGTAGATGAAGGAGGGGGGGCAGGAGGAGGAGGAGGAGGGG
GAGGGGGGGAGGATTTATAA
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protein sequence of NO05G01180.1

>NO05G01180.1-protein ID=NO05G01180.1-protein|Name=NO05G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MKSHIDLNEYYRGVLAHAQRLLTAHMTVGEVIKKRVVEFRNRCHELRVEE
QNIDKATIAARWDNFNRQITVHEHSQKTLEVLFKRLGKLVYELLPSINQR
IDEQLFQRLKKLEPMMGEFSDLESIIKEVTQGGAQGAGAGLKGAAVDEGG
GAGGGGGGGGGEDL*
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Synonyms
Publications