NO05G01180.1, NO05G01180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01180.1
Unique NameNO05G01180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length495
Alignment locationchr5:344625..345294 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:344625..345294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01180.1 vs.
Match: EWM28272.1 (PDZ domain protein [Nannochloropsis gaditana])

HSP 1 Score: 122.9 bits (307), Expect = 9.500e-25
Identity = 73/162 (45.06%), Postives = 102/162 (62.96%), Query Frame = 0 
Query:    5 IDLNEYYRGVLAHAQRLLTAHMTVGEVIKKRVVEFRNRCHELRVEEQNIDKATIAARWDNFNRQITVHEHSQKTLEVLFKRLGKLVYELLPSINQRIDEQLFQRLKKLEPMMGEFSDLESIIKEVTQGGAQGAGAGLKGAA-----VDEGGGAGGGGGGGGG 162
            +D NEY+RGVLAH  RL+  +  V E++KKR+V +R +CHE R+ +  +DKA +A RWD  N Q   H   QK++  L  +L + V EL P++N +IDEQL+ +L+KLE +MGE  DL S++KEV+Q G  G  AG +G       +DEG G G     G G
Sbjct:  585 LDGNEYFRGVLAHVHRLVEENGAVRELLKKRIVTYRMQCHEFRMADTRVDKAPLARRWDELNDQYRTHGDVQKSIHKLVTQLEQAVGELYPAVNGQIDEQLYLQLRKLETIMGEIGDLNSVLKEVSQAGRNGHAAGARGETGRDRRLDEGEGFGWEACAGAG 746
The following BLAST results are available for this feature:
BLAST of NO05G01180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28272.19.500e-2545.06PDZ domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01180NO05G01180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01180.1NO05G01180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01180.1.cds1NO05G01180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01180.1.cds2NO05G01180.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01180.1 ID=NO05G01180.1|Name=NO05G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=495bp
ATGAAATCGCATATAGATCTCAATGAATATTATCGAGGGGTGCTTGCCCA
TGCGCAGCGGCTGCTGACAGCCCATATGACGGTGGGGGAAGTGATCAAGA
AGAGGGTGGTGGAATTTAGGAATAGGTGCCACGAGCTGAGGGTTGAGGAA
CAGAATATAGATAAGGCCACGATTGCGGCGCGATGGGATAATTTTAACCG
TCAAATTACTGTCCACGAGCACTCTCAGAAGACTCTCGAAGTACTTTTCA
AACGCCTCGGCAAGCTGGTGTATGAGTTGCTCCCAAGCATCAACCAACGA
ATCGATGAGCAGCTCTTTCAAAGACTGAAGAAGCTTGAGCCCATGATGGG
GGAATTTTCAGACTTGGAGTCGATCATCAAGGAGGTGACCCAGGGGGGGG
CGCAAGGGGCTGGAGCGGGGCTGAAGGGCGCTGCAGTAGATGAAGGAGGG
GGGGCAGGAGGAGGAGGAGGAGGGGGAGGGGGGGAGGATTTATAA
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protein sequence of NO05G01180.1

>NO05G01180.1-protein ID=NO05G01180.1-protein|Name=NO05G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MKSHIDLNEYYRGVLAHAQRLLTAHMTVGEVIKKRVVEFRNRCHELRVEE
QNIDKATIAARWDNFNRQITVHEHSQKTLEVLFKRLGKLVYELLPSINQR
IDEQLFQRLKKLEPMMGEFSDLESIIKEVTQGGAQGAGAGLKGAAVDEGG
GAGGGGGGGGGEDL*
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mRNA from alignment at chr5:344625..345294+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01180.1 ID=NO05G01180.1|Name=NO05G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=670bp|location=Sequence derived from alignment at chr5:344625..345294+ (Nannochloropsis oceanica)
ATGAAATCGCATATAGATCTCAATGAATATTATCGAGGGGTGCTTGCCCA
TGCGCAGCGGCTGCTGACAGCCCATATGACGGTGGGGGAAGTGATCAAGA
AGAGGGTGGTGGAATTTAGGAATAGGTGCCACGAGCTGAGGGTTGAGGAA
CAGAATATAGATAAGGCCACGATTGCGGCGCGATGGGATAATTGTGAGTA
TGATAACGGAGGATGGGAGTCGGGAGAATGGAGGGGGAGGCTATTGGTGC
ATTTTTGGTTTCTGTGCACGATTGGCTGTTTGCGCATCGTGTAAGTAACG
CATAAATGAGACCTACCCTTTAATCCACTCTCTAACCCCCACTCTCTCCC
TCCCACCCCTCCTCTTAGTTAACCGTCAAATTACTGTCCACGAGCACTCT
CAGAAGACTCTCGAAGTACTTTTCAAACGCCTCGGCAAGCTGGTGTATGA
GTTGCTCCCAAGCATCAACCAACGAATCGATGAGCAGCTCTTTCAAAGAC
TGAAGAAGCTTGAGCCCATGATGGGGGAATTTTCAGACTTGGAGTCGATC
ATCAAGGAGGTGACCCAGGGGGGGGCGCAAGGGGCTGGAGCGGGGCTGAA
GGGCGCTGCAGTAGATGAAGGAGGGGGGGCAGGAGGAGGAGGAGGAGGGG
GAGGGGGGGAGGATTTATAA
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Coding sequence (CDS) from alignment at chr5:344625..345294+

>NO05G01180.1 ID=NO05G01180.1|Name=NO05G01180.1|organism=Nannochloropsis oceanica|type=CDS|length=495bp|location=Sequence derived from alignment at chr5:344625..345294+ (Nannochloropsis oceanica)
ATGAAATCGCATATAGATCTCAATGAATATTATCGAGGGGTGCTTGCCCA
TGCGCAGCGGCTGCTGACAGCCCATATGACGGTGGGGGAAGTGATCAAGA
AGAGGGTGGTGGAATTTAGGAATAGGTGCCACGAGCTGAGGGTTGAGGAA
CAGAATATAGATAAGGCCACGATTGCGGCGCGATGGGATAATTTTAACCG
TCAAATTACTGTCCACGAGCACTCTCAGAAGACTCTCGAAGTACTTTTCA
AACGCCTCGGCAAGCTGGTGTATGAGTTGCTCCCAAGCATCAACCAACGA
ATCGATGAGCAGCTCTTTCAAAGACTGAAGAAGCTTGAGCCCATGATGGG
GGAATTTTCAGACTTGGAGTCGATCATCAAGGAGGTGACCCAGGGGGGGG
CGCAAGGGGCTGGAGCGGGGCTGAAGGGCGCTGCAGTAGATGAAGGAGGG
GGGGCAGGAGGAGGAGGAGGAGGGGGAGGGGGGGAGGATTTATAA
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Synonyms
Publications