NO05G00690, NO05G00690 (gene) Nannochloropsis oceanica

Overview
NameNO05G00690
Unique NameNO05G00690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length612
Alignment locationchr5:227423..228034 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:227423..228034 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G00690 vs. NCBI_GenBank
Match: XP_005852552.1 (hypothetical protein NGA_0116820 [Nannochloropsis gaditana CCMP526] >EKU23280.1 hypothetical protein NGA_0116820 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 146.0 bits (367), Expect = 1.000e-31
Identity = 106/159 (66.67%), Postives = 126/159 (79.25%), Query Frame = 0 
Query:    1 MEGEAEITWEIDDDVFEVLGEEGAEGYEVAGFDDGKGNGWMEVE-LKEGEXXXXXXXXXXXXXXLAAATLEDLAGSLLEWNRSAVFRKKTKKALSAVRKLFMEGRLTEEEKMKLIYSVVYATSQEEVSQVELAYDLLVKEYDDEAEFSEQLKLILNSLE 159
            M  EAEITWE+DD +FE  GE+  EG+E    +DG     ++VE +KEG  XXXXXXXXXXXX L AA+ EDLAG LLEWNR+ VFRK+TKKAL AVRKL  EG LTE +KMKLI+SV+ A S+EEVSQVE+AYDLLV E++DE EFSEQLKLIL++LE
Sbjct:  205 MGAEAEITWEMDDGMFEGDGED--EGFE---NEDGMA---VDVEVVKEGGGXXXXXXXXXXXXRL-AASFEDLAGRLLEWNRADVFRKETKKALGAVRKLAREGYLTEVDKMKLIHSVISAASREEVSQVEMAYDLLVSEFEDEEEFSEQLKLILHTLE 354
The following BLAST results are available for this feature:
BLAST of NO05G00690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852552.11.000e-3166.67hypothetical protein NGA_0116820 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00690.1NO05G00690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00690.1NO05G00690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00690 ID=NO05G00690|Name=NO05G00690|organism=Nannochloropsis oceanica|type=gene|length=612bp
ATGGAGGGGGAGGCGGAGATAACGTGGGAGATAGACGACGACGTGTTTGA
GGTGTTGGGGGAAGAAGGGGCGGAGGGATATGAGGTGGCGGGCTTTGACG
ACGGGAAAGGGAATGGGTGGATGGAGGTGGAGTTGAAGGAGGGAGAGAGG
GAGGGAGGGAAGGAGGGAGAGAGGGAGGGGGAGCAGAGGCTCGCGGCGGC
GACGCTGGAGGATTTGGCAGGGAGTTTACTGGAGTGGAATCGGTCGGCGG
TTTTTCGAAAGAAGACGAAGAAAGCCCTGAGCGCTGTGCGGAAACTCTTC
ATGGAGGGGCGGTTGACGGAGGAGGAGAAGgtgagtggggaggggaagag
ggaggaagggaagaggattaggagatcaccaccgggaatccgtcaacaaa
gcacaagctcacgtctctctcttccttcctccctccctcccttcctctct
atgctttctcccaagATGAAACTGATCTATTCGGTGGTTTATGCGACGTC
GCAGGAGGAGGTTTCCCAGGTGGAACTGGCGTATGACTTGTTAGTGAAGG
AATATGACGACGAGGCGGAATTTTCGGAGCAGTTGAAGCTGATTTTGAAC
AGCCTGGAGTGA
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protein sequence of NO05G00690.1

>NO05G00690.1-protein ID=NO05G00690.1-protein|Name=NO05G00690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MEGEAEITWEIDDDVFEVLGEEGAEGYEVAGFDDGKGNGWMEVELKEGER
EGGKEGEREGEQRLAAATLEDLAGSLLEWNRSAVFRKKTKKALSAVRKLF
MEGRLTEEEKMKLIYSVVYATSQEEVSQVELAYDLLVKEYDDEAEFSEQL
KLILNSLE*
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Synonyms
Publications