NO05G00690.1, NO05G00690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00690.1
Unique NameNO05G00690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length477
Alignment locationchr5:227423..228034 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:227423..228034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00690.1 vs.
Match: XP_005852552.1 (hypothetical protein NGA_0116820 [Nannochloropsis gaditana CCMP526]; EKU23280.1 hypothetical protein NGA_0116820 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 160.2 bits (404), Expect = 5.200e-36
Identity = 102/159 (64.15%), Postives = 124/159 (77.99%), Query Frame = 0 
Query:    1 MEGEAEITWEIDDDVFEVLGEEGAEGYEVAGFDDGKGNGWMEVEL-KEGEREGGKEGEREGEQRLAAATLEDLAGSLLEWNRSAVFRKKTKKALSAVRKLFMEGRLTEEEKMKLIYSVVYATSQEEVSQVELAYDLLVKEYDDEAEFSEQLKLILNSLE 159
            M  EAEITWE+DD +FE  GE+  EG+E    +DG     ++VE+ KEG  E G+EG RE E+RLAA+  EDLAG LLEWNR+ VFRK+TKKAL AVRKL  EG LTE +KMKLI+SV+ A S+EEVSQVE+AYDLLV E++DE EFSEQLKLIL++LE
Sbjct:  205 MGAEAEITWEMDDGMFEGDGED--EGFEN---EDGMA---VDVEVVKEGGGEEGREGGREEERRLAAS-FEDLAGRLLEWNRADVFRKETKKALGAVRKLAREGYLTEVDKMKLIHSVISAASREEVSQVEMAYDLLVSEFEDEEEFSEQLKLILHTLE 354
The following BLAST results are available for this feature:
BLAST of NO05G00690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852552.15.200e-3664.15hypothetical protein NGA_0116820 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00690NO05G00690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00690.1NO05G00690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00690.1.cds1NO05G00690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00690.1.cds2NO05G00690.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00690.1 ID=NO05G00690.1|Name=NO05G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=477bp
ATGGAGGGGGAGGCGGAGATAACGTGGGAGATAGACGACGACGTGTTTGA
GGTGTTGGGGGAAGAAGGGGCGGAGGGATATGAGGTGGCGGGCTTTGACG
ACGGGAAAGGGAATGGGTGGATGGAGGTGGAGTTGAAGGAGGGAGAGAGG
GAGGGAGGGAAGGAGGGAGAGAGGGAGGGGGAGCAGAGGCTCGCGGCGGC
GACGCTGGAGGATTTGGCAGGGAGTTTACTGGAGTGGAATCGGTCGGCGG
TTTTTCGAAAGAAGACGAAGAAAGCCCTGAGCGCTGTGCGGAAACTCTTC
ATGGAGGGGCGGTTGACGGAGGAGGAGAAGATGAAACTGATCTATTCGGT
GGTTTATGCGACGTCGCAGGAGGAGGTTTCCCAGGTGGAACTGGCGTATG
ACTTGTTAGTGAAGGAATATGACGACGAGGCGGAATTTTCGGAGCAGTTG
AAGCTGATTTTGAACAGCCTGGAGTGA
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protein sequence of NO05G00690.1

>NO05G00690.1-protein ID=NO05G00690.1-protein|Name=NO05G00690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MEGEAEITWEIDDDVFEVLGEEGAEGYEVAGFDDGKGNGWMEVELKEGER
EGGKEGEREGEQRLAAATLEDLAGSLLEWNRSAVFRKKTKKALSAVRKLF
MEGRLTEEEKMKLIYSVVYATSQEEVSQVELAYDLLVKEYDDEAEFSEQL
KLILNSLE*
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mRNA from alignment at chr5:227423..228034+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00690.1 ID=NO05G00690.1|Name=NO05G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=612bp|location=Sequence derived from alignment at chr5:227423..228034+ (Nannochloropsis oceanica)
ATGGAGGGGGAGGCGGAGATAACGTGGGAGATAGACGACGACGTGTTTGA
GGTGTTGGGGGAAGAAGGGGCGGAGGGATATGAGGTGGCGGGCTTTGACG
ACGGGAAAGGGAATGGGTGGATGGAGGTGGAGTTGAAGGAGGGAGAGAGG
GAGGGAGGGAAGGAGGGAGAGAGGGAGGGGGAGCAGAGGCTCGCGGCGGC
GACGCTGGAGGATTTGGCAGGGAGTTTACTGGAGTGGAATCGGTCGGCGG
TTTTTCGAAAGAAGACGAAGAAAGCCCTGAGCGCTGTGCGGAAACTCTTC
ATGGAGGGGCGGTTGACGGAGGAGGAGAAGGTGAGTGGGGAGGGGAAGAG
GGAGGAAGGGAAGAGGATTAGGAGATCACCACCGGGAATCCGTCAACAAA
GCACAAGCTCACGTCTCTCTCTTCCTTCCTCCCTCCCTCCCTTCCTCTCT
ATGCTTTCTCCCAAGATGAAACTGATCTATTCGGTGGTTTATGCGACGTC
GCAGGAGGAGGTTTCCCAGGTGGAACTGGCGTATGACTTGTTAGTGAAGG
AATATGACGACGAGGCGGAATTTTCGGAGCAGTTGAAGCTGATTTTGAAC
AGCCTGGAGTGA
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Coding sequence (CDS) from alignment at chr5:227423..228034+

>NO05G00690.1 ID=NO05G00690.1|Name=NO05G00690.1|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at chr5:227423..228034+ (Nannochloropsis oceanica)
ATGGAGGGGGAGGCGGAGATAACGTGGGAGATAGACGACGACGTGTTTGA
GGTGTTGGGGGAAGAAGGGGCGGAGGGATATGAGGTGGCGGGCTTTGACG
ACGGGAAAGGGAATGGGTGGATGGAGGTGGAGTTGAAGGAGGGAGAGAGG
GAGGGAGGGAAGGAGGGAGAGAGGGAGGGGGAGCAGAGGCTCGCGGCGGC
GACGCTGGAGGATTTGGCAGGGAGTTTACTGGAGTGGAATCGGTCGGCGG
TTTTTCGAAAGAAGACGAAGAAAGCCCTGAGCGCTGTGCGGAAACTCTTC
ATGGAGGGGCGGTTGACGGAGGAGGAGAAGATGAAACTGATCTATTCGGT
GGTTTATGCGACGTCGCAGGAGGAGGTTTCCCAGGTGGAACTGGCGTATG
ACTTGTTAGTGAAGGAATATGACGACGAGGCGGAATTTTCGGAGCAGTTG
AAGCTGATTTTGAACAGCCTGGAGTGA
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Synonyms
Publications