NO05G00430, NO05G00430 (gene) Nannochloropsis oceanica

Overview
NameNO05G00430
Unique NameNO05G00430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length737
Alignment locationchr5:162113..162849 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:162113..162849 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G00430 vs. NCBI_GenBank
Match: EWM28343.1 (hypothetical protein Naga_100367g3 [Nannochloropsis gaditana])

HSP 1 Score: 167.9 bits (424), Expect = 2.700e-38
Identity = 87/165 (52.73%), Postives = 119/165 (72.12%), Query Frame = 0 
Query:    6 LQFLLVSMVMAAGIASESPEAGSK-----THANLR-RALLTPPRDVYSMTITNKLSVAVNSTFTFTKGTNIHEMMIEKKLIAPGASFTSGPYEYKEGTATFRYVLQMVKVKNLPAGAGYSEQQALSLEAPFEGVTGVTPLMELHVLPKESDGRGEKLGSLLLKAP 165
            L  L +++++A  + S++ +  S+      H +LR RALL PPRDVY+MT+TN L+V VNSTFTF+KG   + +MIEKK + PG SFTSGP+EYKEG ATF+Y+L+ VK K  PAGA YS Q+AL L++PF GVTG+TPL+E  + PK  D   + +G+L+LK P
Sbjct:   40 LHMLAMAVMIAGAVLSDAAKEASRGDAQGIHPHLRKRALLLPPRDVYAMTLTNSLAVPVNSTFTFSKGIT-NWLMIEKKHLQPGMSFTSGPFEYKEGNATFQYILRTVKAKYWPAGANYSGQEALWLDSPFSGVTGITPLLEAELTPKGDDSTRQHMGALVLKIP 203
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BLAST of NO05G00430 vs. NCBI_GenBank
Match: XP_005852784.1 (hypothetical protein NGA_0082802 [Nannochloropsis gaditana CCMP526] >EKU23048.1 hypothetical protein NGA_0082802 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 119.0 bits (297), Expect = 1.400e-23
Identity = 54/92 (58.70%), Postives = 70/92 (76.09%), Query Frame = 0 
Query:   73 MMIEKKLIAPGASFTSGPYEYKEGTATFRYVLQMVKVKNLPAGAGYSEQQALSLEAPFEGVTGVTPLMELHVLPKESDGRGEKLGSLLLKAP 165
            +MIEKK + PG SFTSGP+EYKEG ATF+Y+L+ VK K  PAGA YS Q+AL L++PF GVTG+TPL+E  + PK  D   + +G+L+LK P
Sbjct:   47 LMIEKKHLQPGMSFTSGPFEYKEGNATFQYILRTVKAKYWPAGANYSGQEALWLDSPFSGVTGITPLLEAELTPKGDDSTRQHMGALVLKIP 138
The following BLAST results are available for this feature:
BLAST of NO05G00430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM28343.12.700e-3852.73hypothetical protein Naga_100367g3 [Nannochloropsi... [more]
XP_005852784.11.400e-2358.70hypothetical protein NGA_0082802 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003844NSK003844Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00430.1NO05G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100367g3gene2235Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00430.1NO05G00430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00430 ID=NO05G00430|Name=NO05G00430|organism=Nannochloropsis oceanica|type=gene|length=737bp
ATGATCAGCACGTGCCTTCAATTTCTCCTCGTGTCCATGGTGATGGCTGC
CGGCATTGCCTCAGAGAGCCCTGAAGCGGGCAGCAAAACCCACGCCAACC
TCCGgtacgtaagcgcagaggccctcgctcccagccgcgagacatgcttg
ccctattatctcacacacaccactacggtcttgtctcaagcgctttgtgt
gtgcatcctctcgcttcccgctctccccctttatggtctcgacctaccac
ccccttcgtaatccccgggggcaccctccgccgagccaactaacgcattc
aggaatccacctgatcttacgcacactacagCCGTGCCCTACTCACACCA
CCCCGGGATGTGTACTCCATGACCATCACCAATAAGTTGAGTGTCGCCGT
CAACTCGACCTTTACTTTCACCAAAGGAACGAACATTCATGAGATGATGA
TAGAGAAGAAGCTAATCGCCCCCGGCGCATCCTTCACCTCTGGGCCCTAC
GAATACAAGGAGGGCACCGCCACCTTCCGGTACGTCCTCCAAATGGTCAA
AGTCAAAAACTTGCCGGCTGGCGCAGGCTATTCGGAGCAGCAGGCTCTCT
CGTTGGAGGCTCCGTTTGAAGGCGTGACGGGTGTGACCCCGCTTATGGAA
TTACACGTGTTGCCTAAGGAGAGTGATGGGAGGGGGGAGAAATTGGGAAG
CTTGCTGTTGAAGGCGCCGGTGGTGCCTGCTGTTTAG
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protein sequence of NO05G00430.1

>NO05G00430.1-protein ID=NO05G00430.1-protein|Name=NO05G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MISTCLQFLLVSMVMAAGIASESPEAGSKTHANLRRALLTPPRDVYSMTI
TNKLSVAVNSTFTFTKGTNIHEMMIEKKLIAPGASFTSGPYEYKEGTATF
RYVLQMVKVKNLPAGAGYSEQQALSLEAPFEGVTGVTPLMELHVLPKESD
GRGEKLGSLLLKAPVVPAV*
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Synonyms
Publications